Wall clock time and date at job start Wed Apr 15 2020 11:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 H 1.09005 * 109.46915 * 304.99633 * 3 2 1 5 5 C 1.52994 * 109.47123 * 64.99786 * 3 2 1 6 6 C 1.53003 * 109.47225 * 185.00279 * 3 2 1 7 7 H 1.09000 * 109.47090 * 59.99457 * 6 3 2 8 8 N 1.46903 * 109.46696 * 299.99826 * 6 3 2 9 9 C 1.50695 * 109.47189 * 180.02562 * 6 3 2 10 10 O 1.21279 * 120.00400 * 99.99695 * 9 6 3 11 11 N 1.34776 * 119.99888 * 279.99999 * 9 6 3 12 12 C 1.47087 * 120.88162 * 179.97438 * 11 9 6 13 13 C 1.53233 * 108.51817 * 231.16029 * 12 11 9 14 14 N 1.46905 * 109.34461 * 306.16600 * 13 12 11 15 15 C 1.46895 * 110.99974 * 187.25362 * 14 13 12 16 16 C 1.50702 * 109.46770 * 170.00187 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72214 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.46900 * 111.26196 * 63.11001 * 14 13 12 25 25 C 1.47077 * 120.88347 * 359.97438 * 11 9 6 26 26 H 1.09005 * 109.46804 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47213 * 299.99943 * 1 2 3 28 28 H 1.08997 * 109.47438 * 60.00253 * 1 2 3 29 29 H 1.09010 * 109.46997 * 240.00061 * 2 1 3 30 30 H 1.09000 * 109.47654 * 120.00231 * 2 1 3 31 31 H 1.09007 * 109.46785 * 60.00620 * 5 3 2 32 32 H 1.08999 * 109.47130 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47655 * 300.00447 * 5 3 2 34 34 H 1.00888 * 111.00114 * 299.99892 * 8 6 3 35 35 H 1.00899 * 110.99998 * 63.95910 * 8 6 3 36 36 H 1.08999 * 109.62348 * 111.45160 * 12 11 9 37 37 H 1.08990 * 109.78576 * 350.96518 * 12 11 9 38 38 H 1.09003 * 109.49046 * 186.21182 * 13 12 11 39 39 H 1.08999 * 109.49709 * 66.12959 * 13 12 11 40 40 H 1.09004 * 109.47258 * 50.00511 * 15 14 13 41 41 H 1.08994 * 109.47601 * 290.00103 * 15 14 13 42 42 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.49699 * 56.85399 * 24 14 13 44 44 H 1.09003 * 109.48977 * 176.93746 * 24 14 13 45 45 H 1.09005 * 109.63045 * 248.54971 * 25 11 9 46 46 H 1.08998 * 109.62824 * 9.12695 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4444 -0.1258 7 1 3.8531 0.9570 -1.0571 8 7 4.1505 0.7179 1.0088 9 6 4.0672 2.8651 -0.1252 10 8 4.5256 3.3458 0.8895 11 7 4.0069 3.6017 -1.2523 12 6 4.4911 4.9904 -1.2734 13 6 3.3937 5.8795 -1.8676 14 7 2.9871 5.3436 -3.1736 15 6 2.0616 6.2595 -3.8535 16 6 1.8599 5.8051 -5.2761 17 1 2.3681 4.9238 -5.6388 18 6 1.0217 6.5109 -6.1130 19 7 0.8414 6.1113 -7.3529 20 14 0.1422 8.0349 -5.4856 21 1 0.9876 9.2307 -5.7315 22 1 -1.1516 8.1883 -6.1983 23 1 -0.1086 7.8970 -4.0285 24 6 2.3990 4.0041 -3.0400 25 6 3.4553 3.0382 -2.4938 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.0699 1.5875 2.1491 32 1 1.9989 3.1541 1.3075 33 1 0.5489 2.1252 1.3969 34 1 3.8976 1.1504 1.8844 35 1 3.8802 -0.2541 0.9941 36 1 5.3885 5.0558 -1.8886 37 1 4.7181 5.3175 -0.2588 38 1 3.7748 6.8930 -1.9931 39 1 2.5345 5.8941 -1.1970 40 1 2.4786 7.2666 -3.8494 41 1 1.1038 6.2607 -3.3332 42 1 0.2520 6.6081 -7.9417 43 1 1.5537 4.0447 -2.3531 44 1 2.0589 3.6573 -4.0159 45 1 4.2530 2.9157 -3.2265 46 1 2.9950 2.0725 -2.2847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123849437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:52 Heat of formation + Delta-G solvation = -56.432323 kcal Electronic energy + Delta-G solvation = -23925.235881 eV Core-core repulsion = 20655.528765 eV Total energy + Delta-G solvation = -3269.707115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59212 -39.34387 -38.01957 -35.98510 -34.42596 -33.70061 -32.26491 -30.58937 -30.24399 -28.08329 -26.87072 -25.11799 -24.56624 -23.29657 -21.94730 -20.91509 -19.59847 -18.94315 -18.53643 -17.16679 -16.77404 -16.65156 -16.40587 -16.05406 -15.83253 -15.60534 -15.43395 -15.17771 -14.87726 -14.64090 -14.46370 -14.12092 -13.86127 -13.60955 -13.17443 -13.04179 -12.95947 -12.88160 -12.53960 -12.38371 -12.32660 -12.22113 -12.17750 -11.92734 -11.85151 -11.74223 -11.53468 -11.41962 -10.77445 -10.70856 -9.79398 -9.63265 -9.07626 -8.27764 -6.30608 1.35001 1.36089 1.45543 1.58731 1.91660 2.34005 3.04598 3.13161 3.37184 3.59027 3.75944 3.82036 3.94791 4.01307 4.05077 4.20130 4.24865 4.29842 4.38357 4.45161 4.51955 4.55766 4.66711 4.67759 4.71801 4.79551 4.83377 4.91577 4.97514 5.01864 5.03415 5.07939 5.10552 5.18920 5.34647 5.42653 5.45314 5.52266 5.91804 6.05568 6.28070 6.42383 6.56159 6.59593 6.75583 7.14414 7.33069 8.88142 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.004456 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.949350 B = 6282.340599 C = 6964.830018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.120 4.120 4 H 0.072 0.928 5 C -0.147 4.147 6 C 0.085 3.915 7 H 0.117 0.883 8 N -0.832 5.832 9 C 0.521 3.479 10 O -0.572 6.572 11 N -0.610 5.610 12 C 0.124 3.876 13 C 0.043 3.957 14 N -0.538 5.538 15 C 0.172 3.828 16 C -0.513 4.513 17 H 0.047 0.953 18 C 0.014 3.986 19 N -0.944 5.944 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.256 1.256 24 C 0.053 3.947 25 C 0.118 3.882 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.348 0.652 35 H 0.360 0.640 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.023 0.977 40 H 0.029 0.971 41 H -0.016 1.016 42 H 0.267 0.733 43 H 0.024 0.976 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -11.846 16.586 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.141 4.141 4 H 0.091 0.909 5 C -0.204 4.204 6 C -0.030 4.030 7 H 0.134 0.866 8 N -0.366 5.366 9 C 0.310 3.690 10 O -0.452 6.452 11 N -0.344 5.344 12 C 0.001 3.999 13 C -0.086 4.086 14 N -0.263 5.263 15 C 0.045 3.955 16 C -0.551 4.551 17 H 0.065 0.935 18 C -0.184 4.184 19 N -0.585 5.585 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.180 1.180 24 C -0.076 4.076 25 C -0.005 4.005 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.163 0.837 35 H 0.177 0.823 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.002 0.998 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.537 -11.414 16.372 20.119 hybrid contribution -2.241 1.006 0.297 2.475 sum 0.296 -10.408 16.669 19.654 Atomic orbital electron populations 1.21811 0.95374 1.02246 1.01758 1.21545 0.96445 0.93792 1.03215 1.21900 0.94080 0.98829 0.99263 0.90925 1.21846 1.02040 0.99360 0.97197 1.21411 0.93002 0.90601 0.97955 0.86569 1.58564 1.66088 1.06917 1.05056 1.21005 0.77293 0.88691 0.82000 1.90623 1.47619 1.73579 1.33335 1.48265 1.61610 1.13669 1.10821 1.21603 0.96405 0.80321 1.01607 1.22481 0.97268 0.99309 0.89516 1.61808 1.42596 1.03031 1.18828 1.19938 0.89685 0.92762 0.93131 1.21209 1.26132 1.12443 0.95333 0.93508 1.25733 0.97233 1.00666 0.94797 1.70026 1.39289 1.41933 1.07224 0.85817 0.78333 0.80075 0.79297 1.19140 1.20850 1.17999 1.22312 0.94967 0.89696 1.00592 1.22001 0.96690 0.96770 0.85020 0.91578 0.92670 0.93312 0.90453 0.90682 0.91681 0.95130 0.91294 0.83714 0.82319 0.90407 0.89231 0.89183 0.95922 0.95310 0.99811 0.92446 0.95814 0.90259 0.90188 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.34 16 2 C -0.11 -1.38 4.93 30.59 0.15 -1.23 16 3 C -0.12 -2.06 1.98 -10.79 -0.02 -2.09 16 4 H 0.07 1.44 6.85 -2.38 -0.02 1.43 16 5 C -0.15 -2.81 8.36 71.98 0.60 -2.21 16 6 C 0.09 1.68 2.17 44.17 0.10 1.77 16 7 H 0.12 1.97 6.87 -2.39 -0.02 1.96 16 8 N -0.83 -15.07 8.82 -171.80 -1.51 -16.59 16 9 C 0.52 14.40 5.81 87.66 0.51 14.91 16 10 O -0.57 -19.44 15.41 -3.03 -0.05 -19.49 16 11 N -0.61 -17.01 3.01 -818.03 -2.46 -19.47 16 12 C 0.12 3.61 6.59 86.35 0.57 4.18 16 13 C 0.04 1.40 5.62 86.38 0.49 1.89 16 14 N -0.54 -20.98 4.62 -899.90 -4.16 -25.14 16 15 C 0.17 7.93 3.79 85.56 0.32 8.25 16 16 C -0.51 -28.29 8.96 25.60 0.23 -28.06 16 17 H 0.05 2.84 7.37 -2.91 -0.02 2.82 16 18 C 0.01 0.76 5.47 84.66 0.46 1.22 16 19 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 20 Si 0.94 42.98 27.47 68.60 1.88 44.87 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.26 -11.06 6.54 99.48 0.65 -10.41 16 24 C 0.05 1.83 5.45 86.37 0.47 2.30 16 25 C 0.12 3.09 6.01 86.34 0.52 3.61 16 26 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.05 0.74 6.56 -2.39 -0.02 0.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.74 7.03 -2.39 -0.02 0.72 16 31 H 0.06 1.09 6.67 -2.38 -0.02 1.08 16 32 H 0.03 0.76 7.00 -2.39 -0.02 0.74 16 33 H 0.07 1.20 6.56 -2.39 -0.02 1.18 16 34 H 0.35 6.78 6.75 -89.70 -0.61 6.17 16 35 H 0.36 4.43 7.51 -89.69 -0.67 3.75 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 2.62 7.07 -2.39 -0.02 2.60 16 38 H 0.09 2.75 7.99 -2.39 -0.02 2.73 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.03 1.31 7.40 -2.38 -0.02 1.30 16 41 H -0.02 -0.74 7.17 -2.39 -0.02 -0.76 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 3.11 6.67 -2.39 -0.02 3.09 16 45 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.11 2.25 4.78 -2.39 -0.01 2.23 16 Total: -1.00 -67.49 344.42 -1.26 -68.75 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.35 Total: 20.73 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.09 Total: 3.21 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -7.84 Total: -118.07 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.87 kcal Total: -67.49 -1.26 -68.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123849437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.319 kcal (2) G-P(sol) polarization free energy of solvation -67.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds