Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 H 1.09000 * 109.47194 * 304.99761 * 3 2 1 5 5 C 1.50704 * 109.46847 * 184.99829 * 3 2 1 6 6 H 1.07995 * 120.00166 * 239.99557 * 5 3 2 7 7 C 1.37876 * 119.99907 * 60.00250 * 5 3 2 8 8 N 1.31515 * 120.00033 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99902 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46975 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47211 * 120.00029 * 9 7 5 12 12 H 1.48501 * 109.46919 * 239.99817 * 9 7 5 13 13 N 1.46498 * 109.47227 * 65.00258 * 3 2 1 14 14 C 1.34784 * 119.99573 * 274.99677 * 13 3 2 15 15 O 1.21280 * 120.00077 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99865 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.46847 * 46.37808 * 16 14 13 18 18 C 1.53003 * 109.47344 * 286.37716 * 16 14 13 19 19 N 1.46896 * 109.47019 * 166.37448 * 16 14 13 20 20 C 1.46955 * 111.00027 * 72.30427 * 19 16 14 21 21 C 1.53049 * 109.36645 * 183.18571 * 20 19 16 22 22 N 1.46953 * 109.36366 * 301.59939 * 21 20 19 23 23 C 1.46910 * 110.99926 * 183.18919 * 22 21 20 24 24 C 1.46954 * 110.88490 * 59.32194 * 22 21 20 25 25 C 1.46962 * 110.99789 * 196.10130 * 19 16 14 26 26 H 1.09000 * 109.47251 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47319 * 300.00174 * 1 2 3 28 28 H 1.09001 * 109.47138 * 59.99759 * 1 2 3 29 29 H 1.09001 * 109.46928 * 239.99454 * 2 1 3 30 30 H 1.09005 * 109.46918 * 119.99790 * 2 1 3 31 31 H 0.97001 * 119.99886 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00300 * 94.99325 * 13 3 2 33 33 H 1.08993 * 109.47091 * 179.97438 * 18 16 14 34 34 H 1.09003 * 109.46969 * 300.00311 * 18 16 14 35 35 H 1.08997 * 109.46824 * 60.00115 * 18 16 14 36 36 H 1.09002 * 109.48844 * 63.21633 * 20 19 16 37 37 H 1.08997 * 109.50702 * 303.16679 * 20 19 16 38 38 H 1.08999 * 109.49042 * 181.62793 * 21 20 19 39 39 H 1.09000 * 109.48839 * 61.56853 * 21 20 19 40 40 H 1.08991 * 109.47065 * 59.99785 * 23 22 21 41 41 H 1.09009 * 109.46528 * 299.99877 * 23 22 21 42 42 H 1.09000 * 109.47093 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.48949 * 60.63807 * 24 22 21 44 44 H 1.08996 * 109.49249 * 180.71074 * 24 22 21 45 45 H 1.09000 * 109.49142 * 296.77476 * 25 19 16 46 46 H 1.08997 * 109.48857 * 56.82749 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0051 0.8798 -1.3810 10 1 6.5988 1.5450 -0.1935 11 1 6.4962 -0.5192 -1.4626 12 1 6.4001 1.6155 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6645 1.3669 15 8 -0.3395 2.6320 0.4343 16 6 0.0363 3.3377 2.6548 17 1 0.8472 3.9821 2.9941 18 6 -0.2502 2.2756 3.7181 19 7 -1.1703 4.1453 2.4318 20 6 -2.3523 3.2895 2.2584 21 6 -3.5706 4.1631 1.9503 22 7 -3.7735 5.1205 3.0465 23 6 -4.9802 5.9282 2.8236 24 6 -2.5916 5.9765 3.2199 25 6 -1.3732 5.1028 3.5281 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8293 -0.0612 -2.9498 32 1 2.2720 2.1231 1.9978 33 1 -0.5383 2.7626 4.6497 34 1 -1.0612 1.6311 3.3787 35 1 0.6451 1.6764 3.8836 36 1 -2.5309 2.7263 3.1744 37 1 -2.1829 2.5977 1.4334 38 1 -4.4541 3.5327 1.8499 39 1 -3.4031 4.7056 1.0199 40 1 -5.8498 5.2737 2.7658 41 1 -4.8794 6.4819 1.8900 42 1 -5.1063 6.6286 3.6492 43 1 -2.4128 6.5396 2.3039 44 1 -2.7612 6.6680 4.0451 45 1 -1.5408 4.5603 4.4585 46 1 -0.4895 5.7330 3.6286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330879234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = -24.371583 kcal Electronic energy + Delta-G solvation = -23916.603369 eV Core-core repulsion = 20648.286512 eV Total energy + Delta-G solvation = -3268.316857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98177 -38.43422 -35.87200 -34.73325 -32.43512 -31.37994 -30.92822 -30.28444 -27.47737 -26.87686 -24.64888 -23.62512 -23.26568 -22.43495 -20.17188 -19.38862 -19.10773 -17.07241 -16.34660 -15.78147 -15.28903 -15.11515 -14.92971 -14.77383 -14.63212 -14.36097 -13.92061 -13.62676 -13.04973 -12.82153 -12.65065 -12.54512 -12.40817 -11.96955 -11.80700 -11.67219 -11.57115 -11.28706 -11.24084 -10.95388 -10.93289 -10.84563 -10.75409 -10.67977 -10.27991 -10.13193 -9.60215 -9.01080 -8.84552 -8.48936 -8.44947 -8.02470 -7.73971 -6.10363 -4.19330 3.24431 3.32375 3.34774 3.46753 3.77279 3.86832 4.28531 4.46299 4.83115 4.95927 5.08378 5.19678 5.20643 5.22609 5.28794 5.33268 5.45749 5.48228 5.50411 5.57046 5.68553 5.74272 5.77312 5.87054 5.91646 6.03507 6.20539 6.24532 6.40763 6.47857 6.68082 6.86494 6.90995 7.05783 7.13985 7.23096 7.25509 7.40313 7.52710 7.65691 7.78321 7.94685 8.21477 8.74557 8.82926 9.23911 9.48778 10.94921 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.003809 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.524096 B = 7349.247774 C = 7604.777812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.710 5.710 14 C 0.511 3.489 15 O -0.534 6.534 16 C 0.061 3.939 17 H 0.097 0.903 18 C -0.177 4.177 19 N -0.515 5.515 20 C 0.052 3.948 21 C 0.058 3.942 22 N -0.547 5.547 23 C 0.026 3.974 24 C 0.058 3.942 25 C 0.055 3.945 26 H 0.021 0.979 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.386 0.614 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 7.433 12.469 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.295 3.705 15 O -0.411 6.411 16 C -0.051 4.051 17 H 0.115 0.885 18 C -0.237 4.237 19 N -0.239 5.239 20 C -0.076 4.076 21 C -0.070 4.070 22 N -0.272 5.272 23 C -0.123 4.123 24 C -0.070 4.070 25 C -0.073 4.073 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.332 7.310 11.572 17.769 hybrid contribution 1.343 0.010 0.269 1.370 sum -9.988 7.320 11.841 17.134 Atomic orbital electron populations 1.21833 0.98419 0.97885 1.01175 1.21927 0.92563 0.99932 1.02144 1.18741 0.94056 0.89050 0.81118 0.93373 1.21284 0.90849 1.38740 1.06193 0.92115 1.24887 0.98519 0.94885 0.95436 1.69906 1.34967 1.37759 1.09340 0.86422 0.85023 0.77720 0.78099 1.19768 1.20927 1.20921 1.46464 1.14663 1.56324 1.18386 1.20065 0.82784 0.79114 0.88576 1.90608 1.51194 1.59123 1.40194 1.21679 0.94113 0.94944 0.94339 0.88532 1.22338 1.03260 0.99570 0.98485 1.61992 1.02410 1.17601 1.41935 1.22384 0.88238 0.95145 1.01786 1.22179 0.97932 0.94659 0.92183 1.62209 1.03215 1.17914 1.43900 1.22330 0.92881 0.97172 0.99892 1.22138 0.89551 0.94597 1.00711 1.22190 0.97486 0.94873 0.92762 0.96018 0.94318 0.93175 0.88400 0.95173 0.92678 0.78231 0.92060 0.91536 0.91324 0.94304 0.87749 0.90585 0.93759 0.91472 0.95638 0.91630 0.93926 0.90589 0.94019 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.69 11.29 55.43 0.63 -24.07 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.71 -14.40 5.02 -54.93 -0.28 -14.67 16 14 C 0.51 9.85 5.55 -10.98 -0.06 9.79 16 15 O -0.53 -12.07 11.47 5.56 0.06 -12.01 16 16 C 0.06 0.90 2.70 -68.87 -0.19 0.72 16 17 H 0.10 1.27 7.91 -51.93 -0.41 0.86 16 18 C -0.18 -2.22 8.29 37.16 0.31 -1.91 16 19 N -0.52 -7.54 4.40 -227.87 -1.00 -8.54 16 20 C 0.05 0.76 4.42 -3.77 -0.02 0.74 16 21 C 0.06 0.76 5.62 -3.77 -0.02 0.74 16 22 N -0.55 -6.36 4.97 -242.75 -1.21 -7.56 16 23 C 0.03 0.24 9.60 60.07 0.58 0.81 16 24 C 0.06 0.65 5.62 -3.76 -0.02 0.62 16 25 C 0.06 0.65 5.40 -3.76 -0.02 0.63 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 29 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 6.84 8.54 -40.82 -0.35 6.50 16 33 H 0.06 0.66 7.02 -51.93 -0.36 0.30 16 34 H 0.07 0.90 6.39 -51.93 -0.33 0.57 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.54 6.41 -51.93 -0.33 0.21 16 37 H 0.10 1.81 5.96 -51.93 -0.31 1.50 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.03 0.24 8.14 -51.92 -0.42 -0.19 16 42 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 45 H 0.04 0.47 7.02 -51.93 -0.36 0.11 16 46 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -29.59 347.16 -9.45 -39.04 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.05 Total: 6.74 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 0.18 Total: 0.27 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -1.86 Total: -54.84 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.06 Total: -12.01 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.59 -9.45 -39.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.670 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds