Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 H 1.09000 * 109.47194 * 304.99761 * 3 2 1 5 5 C 1.50704 * 109.46847 * 184.99829 * 3 2 1 6 6 H 1.07995 * 120.00166 * 239.99557 * 5 3 2 7 7 C 1.37876 * 119.99907 * 60.00250 * 5 3 2 8 8 N 1.31515 * 120.00033 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99902 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46975 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47211 * 120.00029 * 9 7 5 12 12 H 1.48501 * 109.46919 * 239.99817 * 9 7 5 13 13 N 1.46498 * 109.47227 * 65.00258 * 3 2 1 14 14 C 1.34784 * 119.99573 * 274.99677 * 13 3 2 15 15 O 1.21280 * 120.00077 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99865 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.46847 * 46.37808 * 16 14 13 18 18 C 1.53003 * 109.47344 * 286.37716 * 16 14 13 19 19 N 1.46896 * 109.47019 * 166.37448 * 16 14 13 20 20 C 1.46955 * 111.00027 * 72.30427 * 19 16 14 21 21 C 1.53049 * 109.36645 * 183.18571 * 20 19 16 22 22 N 1.46953 * 109.36366 * 301.59939 * 21 20 19 23 23 C 1.46910 * 110.99926 * 183.18919 * 22 21 20 24 24 C 1.46954 * 110.88490 * 59.32194 * 22 21 20 25 25 C 1.46962 * 110.99789 * 196.10130 * 19 16 14 26 26 H 1.09000 * 109.47251 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47319 * 300.00174 * 1 2 3 28 28 H 1.09001 * 109.47138 * 59.99759 * 1 2 3 29 29 H 1.09001 * 109.46928 * 239.99454 * 2 1 3 30 30 H 1.09005 * 109.46918 * 119.99790 * 2 1 3 31 31 H 0.97001 * 119.99886 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00300 * 94.99325 * 13 3 2 33 33 H 1.08993 * 109.47091 * 179.97438 * 18 16 14 34 34 H 1.09003 * 109.46969 * 300.00311 * 18 16 14 35 35 H 1.08997 * 109.46824 * 60.00115 * 18 16 14 36 36 H 1.09002 * 109.48844 * 63.21633 * 20 19 16 37 37 H 1.08997 * 109.50702 * 303.16679 * 20 19 16 38 38 H 1.08999 * 109.49042 * 181.62793 * 21 20 19 39 39 H 1.09000 * 109.48839 * 61.56853 * 21 20 19 40 40 H 1.08991 * 109.47065 * 59.99785 * 23 22 21 41 41 H 1.09009 * 109.46528 * 299.99877 * 23 22 21 42 42 H 1.09000 * 109.47093 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.48949 * 60.63807 * 24 22 21 44 44 H 1.08996 * 109.49249 * 180.71074 * 24 22 21 45 45 H 1.09000 * 109.49142 * 296.77476 * 25 19 16 46 46 H 1.08997 * 109.48857 * 56.82749 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0051 0.8798 -1.3810 10 1 6.5988 1.5450 -0.1935 11 1 6.4962 -0.5192 -1.4626 12 1 6.4001 1.6155 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6645 1.3669 15 8 -0.3395 2.6320 0.4343 16 6 0.0363 3.3377 2.6548 17 1 0.8472 3.9821 2.9941 18 6 -0.2502 2.2756 3.7181 19 7 -1.1703 4.1453 2.4318 20 6 -2.3523 3.2895 2.2584 21 6 -3.5706 4.1631 1.9503 22 7 -3.7735 5.1205 3.0465 23 6 -4.9802 5.9282 2.8236 24 6 -2.5916 5.9765 3.2199 25 6 -1.3732 5.1028 3.5281 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8293 -0.0612 -2.9498 32 1 2.2720 2.1231 1.9978 33 1 -0.5383 2.7626 4.6497 34 1 -1.0612 1.6311 3.3787 35 1 0.6451 1.6764 3.8836 36 1 -2.5309 2.7263 3.1744 37 1 -2.1829 2.5977 1.4334 38 1 -4.4541 3.5327 1.8499 39 1 -3.4031 4.7056 1.0199 40 1 -5.8498 5.2737 2.7658 41 1 -4.8794 6.4819 1.8900 42 1 -5.1063 6.6286 3.6492 43 1 -2.4128 6.5396 2.3039 44 1 -2.7612 6.6680 4.0451 45 1 -1.5408 4.5603 4.4585 46 1 -0.4895 5.7330 3.6286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330879234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = -46.562262 kcal Electronic energy + Delta-G solvation = -23917.565630 eV Core-core repulsion = 20648.286512 eV Total energy + Delta-G solvation = -3269.279117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27301 -39.74256 -37.20422 -36.34306 -34.28800 -33.00485 -31.96337 -31.60665 -28.92446 -28.28520 -25.84385 -24.94504 -24.59153 -23.76488 -21.80548 -20.98040 -20.34559 -18.77495 -17.63549 -17.36291 -16.85130 -16.25002 -16.16263 -16.06421 -15.87000 -15.61342 -15.31686 -14.80087 -14.57130 -14.38516 -14.17386 -13.49405 -13.43567 -13.42483 -13.23348 -13.10657 -12.84791 -12.76174 -12.69199 -12.61756 -12.45607 -12.13504 -12.05806 -11.93304 -11.81036 -11.69628 -11.55431 -11.00784 -10.56036 -10.31258 -9.53122 -9.40281 -9.13213 -8.14325 -6.31285 1.44132 1.45519 1.57086 1.97075 2.34931 2.54350 2.98455 3.11262 3.15280 3.86307 3.94063 4.12068 4.14356 4.19124 4.25757 4.34654 4.40863 4.50933 4.58930 4.60975 4.62525 4.68413 4.72259 4.78083 4.82508 4.87789 4.94959 4.99995 5.02202 5.07782 5.12288 5.21725 5.29050 5.47131 5.59060 5.68903 5.82902 5.90963 5.96517 6.00540 6.16724 6.21021 6.22552 6.78303 7.11443 7.36741 7.71648 8.90987 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.003809 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.524096 B = 7349.247774 C = 7604.777812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.707 5.707 14 C 0.505 3.495 15 O -0.572 6.572 16 C 0.072 3.928 17 H 0.119 0.881 18 C -0.169 4.169 19 N -0.537 5.537 20 C 0.059 3.941 21 C 0.064 3.936 22 N -0.550 5.550 23 C 0.025 3.975 24 C 0.058 3.942 25 C 0.056 3.944 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.020 0.980 42 H 0.084 0.916 43 H 0.027 0.973 44 H 0.102 0.898 45 H 0.053 0.947 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 8.250 15.315 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.012 0.988 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.357 5.357 14 C 0.291 3.709 15 O -0.451 6.451 16 C -0.040 4.040 17 H 0.137 0.863 18 C -0.228 4.228 19 N -0.262 5.262 20 C -0.069 4.069 21 C -0.065 4.065 22 N -0.275 5.275 23 C -0.123 4.123 24 C -0.070 4.070 25 C -0.071 4.071 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.045 0.955 44 H 0.121 0.879 45 H 0.071 0.929 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.970 8.148 14.467 19.901 hybrid contribution 1.160 -0.194 -0.641 1.340 sum -9.810 7.954 13.826 18.726 Atomic orbital electron populations 1.21652 0.96988 0.98900 1.00209 1.21764 0.93719 0.99250 1.01099 1.18283 0.93399 0.89023 0.81497 0.98813 1.21634 0.91610 1.38563 1.06557 0.91090 1.25771 1.03210 0.94503 0.95109 1.70063 1.36915 1.38549 1.09885 0.85345 0.79323 0.77769 0.78174 1.18371 1.20502 1.21182 1.46232 1.15665 1.56459 1.17339 1.20988 0.81684 0.78267 0.89945 1.90605 1.52130 1.60258 1.42140 1.21592 0.94962 0.95662 0.91777 0.86326 1.22278 1.03181 0.98837 0.98463 1.61925 1.02221 1.18086 1.43990 1.22194 0.88949 0.95026 1.00713 1.22077 0.97730 0.94893 0.91779 1.62253 1.04196 1.18312 1.42756 1.22405 0.92093 0.97358 1.00422 1.22216 0.89222 0.94618 1.00979 1.22287 0.98462 0.94386 0.91961 0.93855 0.93550 0.95837 0.91301 0.94105 0.92725 0.76468 0.89489 0.92874 0.90550 0.93403 0.91272 0.89580 0.96084 0.90721 0.96123 0.89767 0.95493 0.87938 0.92890 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.72 16 3 C 0.28 14.42 2.24 44.25 0.10 14.52 16 4 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 5 C -0.55 -28.84 8.73 25.60 0.22 -28.62 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.74 11.29 21.45 0.24 -52.49 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.71 -28.71 5.02 -446.09 -2.24 -30.95 16 14 C 0.50 19.58 5.55 87.66 0.49 20.06 16 15 O -0.57 -26.93 11.47 -3.03 -0.03 -26.97 16 16 C 0.07 1.99 2.70 44.17 0.12 2.11 16 17 H 0.12 2.78 7.91 -2.39 -0.02 2.76 16 18 C -0.17 -3.78 8.29 71.98 0.60 -3.19 16 19 N -0.54 -15.11 4.40 -874.86 -3.85 -18.95 16 20 C 0.06 1.70 4.42 86.31 0.38 2.08 16 21 C 0.06 1.63 5.62 86.31 0.49 2.12 16 22 N -0.55 -11.74 4.97 -921.92 -4.58 -16.32 16 23 C 0.03 0.41 9.60 127.69 1.23 1.64 16 24 C 0.06 1.14 5.62 86.31 0.49 1.63 16 25 C 0.06 1.17 5.40 86.31 0.47 1.63 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.99 5.64 -2.39 -0.01 1.98 16 28 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 29 H 0.07 3.83 5.95 -2.39 -0.01 3.81 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.40 13.73 8.54 -92.71 -0.79 12.94 16 33 H 0.09 1.54 7.02 -2.39 -0.02 1.52 16 34 H 0.05 1.35 6.39 -2.39 -0.02 1.33 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.27 6.41 -2.39 -0.02 1.25 16 37 H 0.07 2.49 5.96 -2.39 -0.01 2.47 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.02 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.08 1.08 8.13 -2.39 -0.02 1.07 16 43 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.10 1.50 8.13 -2.39 -0.02 1.48 16 45 H 0.05 1.00 7.02 -2.39 -0.02 0.98 16 46 H 0.09 1.64 8.02 -2.39 -0.02 1.62 16 Total: -1.00 -66.45 347.16 -2.47 -68.93 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.16 Total: 27.84 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.80 Total: 4.67 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -10.42 Total: -118.71 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.03 Total: -26.97 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -66.45 -2.47 -68.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.366 kcal (2) G-P(sol) polarization free energy of solvation -66.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds