Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46859 * 2 1 4 4 H 1.09000 * 109.47167 * 57.19341 * 3 2 1 5 5 C 1.50694 * 109.47010 * 297.18266 * 3 2 1 6 6 O 1.21277 * 120.00366 * 302.32990 * 5 3 2 7 7 N 1.34780 * 119.99614 * 122.32717 * 5 3 2 8 8 C 1.48210 * 119.97143 * 175.28131 * 7 5 3 9 9 C 1.47137 * 110.34003 * 102.46933 * 8 7 5 10 10 C 1.53788 * 111.84135 * 58.30382 * 9 8 7 11 11 N 1.43466 * 107.95723 * 281.66254 * 10 9 8 12 12 C 1.36935 * 118.94100 * 273.60822 * 11 10 9 13 13 H 1.08001 * 119.99802 * 42.54792 * 12 11 10 14 14 C 1.38811 * 120.00378 * 222.54046 * 12 11 10 15 15 N 1.31622 * 119.99714 * 15.44302 * 14 12 11 16 16 Si 1.86794 * 120.00324 * 195.43999 * 14 12 11 17 17 H 1.48506 * 109.47137 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.47106 * 60.00143 * 16 14 12 19 19 H 1.48500 * 109.47044 * 299.99899 * 16 14 12 20 20 C 1.48863 * 122.11797 * 93.89095 * 11 10 9 21 21 C 1.43617 * 119.96890 * 355.26497 * 7 5 3 22 22 N 1.46907 * 109.46574 * 177.18751 * 3 2 1 23 23 C 1.46908 * 110.99436 * 180.62691 * 22 3 2 24 24 C 1.46900 * 111.00162 * 304.57736 * 22 3 2 25 25 H 1.09001 * 109.47145 * 183.82107 * 1 2 3 26 26 H 1.08993 * 109.47351 * 303.82074 * 1 2 3 27 27 H 1.08997 * 109.47368 * 63.82738 * 1 2 3 28 28 H 1.08999 * 109.47201 * 239.99930 * 2 1 3 29 29 H 1.09002 * 109.46939 * 119.99888 * 2 1 3 30 30 H 1.09009 * 109.32303 * 342.20591 * 8 7 5 31 31 H 1.09005 * 109.18730 * 222.65066 * 8 7 5 32 32 H 1.08997 * 109.00816 * 297.68729 * 9 8 7 33 33 H 1.09007 * 109.00501 * 178.90762 * 9 8 7 34 34 H 1.08997 * 109.76813 * 162.05160 * 10 9 8 35 35 H 1.09002 * 109.81089 * 41.29745 * 10 9 8 36 36 H 0.97001 * 120.00139 * 358.48079 * 15 14 12 37 37 H 1.08994 * 109.48235 * 80.34711 * 20 11 10 38 38 H 1.08999 * 109.47512 * 200.37778 * 20 11 10 39 39 H 1.09000 * 108.87938 * 31.46250 * 21 7 5 40 40 H 1.09003 * 108.87492 * 149.90717 * 21 7 5 41 41 H 1.08997 * 109.46683 * 64.76144 * 23 22 3 42 42 H 1.09003 * 109.46868 * 184.75811 * 23 22 3 43 43 H 1.08998 * 109.47020 * 304.75640 * 23 22 3 44 44 H 1.09000 * 109.46872 * 65.59347 * 24 22 3 45 45 H 1.09004 * 109.46901 * 185.58936 * 24 22 3 46 46 H 1.09001 * 109.46883 * 305.59004 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6361 1.9706 0.8637 5 6 1.5954 2.1324 -1.2639 6 8 1.9036 1.6762 -2.3444 7 7 0.8551 3.2565 -1.1933 8 6 0.5065 3.9924 -2.4317 9 6 -0.8863 3.7151 -2.8165 10 6 -1.8752 4.1025 -1.7043 11 7 -1.8479 3.0698 -0.7088 12 6 -2.6582 1.9770 -0.8652 13 1 -2.7584 1.5137 -1.8356 14 6 -3.3506 1.4647 0.2233 15 7 -3.4787 2.1828 1.3189 16 14 -4.1006 -0.2437 0.1333 17 1 -4.7817 -0.5535 1.4161 18 1 -3.0293 -1.2422 -0.1126 19 1 -5.0875 -0.2932 -0.9751 20 6 -0.9717 3.1509 0.4919 21 6 0.4045 3.7399 0.0818 22 7 3.5074 1.4430 0.0680 23 6 4.0331 2.8147 0.0849 24 6 3.9808 0.6834 1.2329 25 1 -0.3633 -1.0254 0.0685 26 1 -0.3634 0.5719 0.8537 27 1 -0.3634 0.4533 -0.9223 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.1722 3.6800 -3.2364 31 1 0.6269 5.0619 -2.2587 32 1 -0.9906 2.6513 -3.0297 33 1 -1.1252 4.2812 -3.7169 34 1 -2.8798 4.1891 -2.1180 35 1 -1.5769 5.0516 -1.2589 36 1 -3.0705 3.0611 1.3737 37 1 -1.4376 3.7932 1.2392 38 1 -0.8309 2.1529 0.9071 39 1 1.1416 3.4752 0.8399 40 1 0.3211 4.8258 0.0378 41 1 3.7114 3.3158 0.9978 42 1 5.1222 2.7868 0.0501 43 1 3.6557 3.3591 -0.7808 44 1 3.7202 -0.3680 1.1113 45 1 5.0631 0.7823 1.3157 46 1 3.5102 1.0724 2.1358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981438423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = 4.352789 kcal Electronic energy + Delta-G solvation = -25561.039421 eV Core-core repulsion = 22293.968146 eV Total energy + Delta-G solvation = -3267.071275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.28218 -37.64475 -36.54995 -34.41759 -33.26966 -32.37793 -30.79449 -28.08844 -27.48912 -27.02060 -25.17660 -23.73028 -22.88003 -22.53426 -20.42169 -19.78581 -18.21852 -17.55034 -16.88714 -16.10629 -15.85943 -14.80642 -14.70664 -14.38418 -14.18733 -13.95645 -13.76650 -13.33610 -13.15232 -12.86785 -12.64639 -12.41636 -12.33641 -12.21763 -12.08998 -11.97309 -11.62958 -11.31740 -11.17527 -11.04118 -10.70979 -10.59004 -10.46755 -10.28249 -10.23845 -10.12261 -9.89518 -9.24052 -9.20565 -8.37868 -8.28998 -8.07832 -6.70711 -6.00735 -3.42675 3.01011 3.35588 3.46737 3.48220 3.65885 4.12037 4.54804 4.80656 5.01937 5.12826 5.14012 5.28708 5.33362 5.44295 5.47666 5.52147 5.54096 5.56732 5.68108 5.77279 5.82668 5.86979 5.89052 5.91564 5.97250 6.00459 6.16777 6.21857 6.39461 6.45920 6.49235 6.58753 6.69548 6.82414 6.92256 6.93211 6.96596 6.97979 7.18439 7.23228 7.92192 8.19326 8.63772 8.68980 9.18816 9.82998 10.29514 11.21016 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.007751 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.308768 B = 3611.715391 C = 4444.644014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C 0.066 3.934 4 H 0.062 0.938 5 C 0.535 3.465 6 O -0.538 6.538 7 N -0.587 5.587 8 C 0.131 3.869 9 C -0.167 4.167 10 C 0.165 3.835 11 N -0.589 5.589 12 C -0.346 4.346 13 H 0.044 0.956 14 C -0.009 4.009 15 N -0.919 5.919 16 Si 1.059 2.941 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.292 1.292 20 C 0.127 3.873 21 C 0.086 3.914 22 N -0.530 5.530 23 C 0.023 3.977 24 C 0.024 3.976 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.028 0.972 36 H 0.270 0.730 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.897 2.431 0.434 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.045 4.045 4 H 0.080 0.920 5 C 0.322 3.678 6 O -0.414 6.414 7 N -0.319 5.319 8 C 0.010 3.990 9 C -0.208 4.208 10 C 0.037 3.963 11 N -0.312 5.312 12 C -0.476 4.476 13 H 0.062 0.938 14 C -0.213 4.213 15 N -0.559 5.559 16 Si 0.889 3.111 17 H -0.211 1.211 18 H -0.215 1.215 19 H -0.219 1.219 20 C 0.001 3.999 21 C -0.040 4.040 22 N -0.256 5.256 23 C -0.126 4.126 24 C -0.124 4.124 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 11.331 0.860 0.282 11.367 hybrid contribution 0.482 1.619 -0.073 1.691 sum 11.814 2.479 0.209 12.073 Atomic orbital electron populations 1.21948 0.92882 1.01891 1.04310 1.21570 0.97442 0.93063 1.02609 1.21952 0.87896 0.98557 0.96107 0.92000 1.20097 0.77575 0.79618 0.90512 1.90613 1.57194 1.63553 1.30027 1.47408 1.51277 1.25788 1.07450 1.20544 0.97256 0.94525 0.86717 1.21812 0.96016 1.03016 0.99969 1.20319 0.96193 0.90294 0.89454 1.43504 1.44554 1.20287 1.22849 1.19720 1.23391 1.07197 0.97294 0.93847 1.25996 0.96012 1.04603 0.94677 1.70816 1.42051 1.12816 1.30220 0.83600 0.76353 0.75465 0.75652 1.21124 1.21505 1.21917 1.22446 0.87067 1.00174 0.90202 1.22070 0.98177 0.98915 0.84874 1.61834 1.07710 1.14313 1.41694 1.22425 1.00647 0.88969 1.00528 1.22447 1.00238 0.99290 0.90403 0.92906 0.91815 0.90785 0.90682 0.91609 0.90606 0.92294 0.91285 0.92796 0.93411 0.95414 0.91822 0.94866 0.91035 0.91803 0.91875 0.95548 0.91115 0.91563 0.90683 0.91348 0.95407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.22 37.16 0.34 -2.62 16 2 C -0.11 -1.82 5.06 -26.73 -0.14 -1.95 16 3 C 0.07 1.08 1.62 -68.86 -0.11 0.97 16 4 H 0.06 1.00 5.36 -51.93 -0.28 0.72 16 5 C 0.53 10.13 4.07 -10.99 -0.04 10.09 16 6 O -0.54 -11.94 16.29 5.56 0.09 -11.85 16 7 N -0.59 -10.39 2.46 -176.43 -0.43 -10.83 16 8 C 0.13 2.20 5.67 -5.92 -0.03 2.17 16 9 C -0.17 -3.06 5.64 -29.14 -0.16 -3.23 16 10 C 0.17 3.34 5.63 -5.24 -0.03 3.31 16 11 N -0.59 -13.53 2.22 -171.78 -0.38 -13.91 16 12 C -0.35 -9.05 8.38 -15.06 -0.13 -9.18 16 13 H 0.04 1.21 7.88 -52.49 -0.41 0.80 16 14 C -0.01 -0.25 4.97 -17.43 -0.09 -0.34 16 15 N -0.92 -26.09 13.23 55.49 0.73 -25.36 16 16 Si 1.06 24.78 29.95 -169.99 -5.09 19.69 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.13 2.64 5.18 -1.56 -0.01 2.63 16 21 C 0.09 1.43 4.97 -4.40 -0.02 1.41 16 22 N -0.53 -7.72 4.88 -244.57 -1.19 -8.91 16 23 C 0.02 0.29 9.37 60.07 0.56 0.85 16 24 C 0.02 0.28 8.95 60.06 0.54 0.81 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.06 1.30 5.61 -51.93 -0.29 1.01 16 27 H 0.07 1.68 6.79 -51.93 -0.35 1.32 16 28 H 0.07 1.34 7.98 -51.93 -0.41 0.93 16 29 H 0.07 0.94 6.30 -51.93 -0.33 0.61 16 30 H 0.08 1.32 7.18 -51.92 -0.37 0.95 16 31 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 32 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 1.02 8.02 -51.93 -0.42 0.61 16 35 H 0.03 0.51 7.59 -51.93 -0.39 0.12 16 36 H 0.27 7.60 5.75 -40.82 -0.23 7.37 16 37 H 0.03 0.73 6.83 -51.93 -0.35 0.38 16 38 H 0.07 1.61 4.58 -51.93 -0.24 1.37 16 39 H 0.06 0.96 5.74 -51.93 -0.30 0.66 16 40 H 0.06 0.96 7.73 -51.93 -0.40 0.56 16 41 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.94 6.95 -51.93 -0.36 0.58 16 44 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 45 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 46 H 0.03 0.30 8.13 -51.93 -0.42 -0.12 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -30.37 340.61 -8.10 -38.48 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.64 Total: 2.62 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 0.68 Total: 4.94 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -1.27 Total: -59.01 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.09 Total: 19.69 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.37 -8.10 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981438423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.829 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds