Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46859 * 2 1 4 4 H 1.09000 * 109.47167 * 57.19341 * 3 2 1 5 5 C 1.50694 * 109.47010 * 297.18266 * 3 2 1 6 6 O 1.21277 * 120.00366 * 302.32990 * 5 3 2 7 7 N 1.34780 * 119.99614 * 122.32717 * 5 3 2 8 8 C 1.48210 * 119.97143 * 175.28131 * 7 5 3 9 9 C 1.47137 * 110.34003 * 102.46933 * 8 7 5 10 10 C 1.53788 * 111.84135 * 58.30382 * 9 8 7 11 11 N 1.43466 * 107.95723 * 281.66254 * 10 9 8 12 12 C 1.36935 * 118.94100 * 273.60822 * 11 10 9 13 13 H 1.08001 * 119.99802 * 42.54792 * 12 11 10 14 14 C 1.38811 * 120.00378 * 222.54046 * 12 11 10 15 15 N 1.31622 * 119.99714 * 15.44302 * 14 12 11 16 16 Si 1.86794 * 120.00324 * 195.43999 * 14 12 11 17 17 H 1.48506 * 109.47137 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.47106 * 60.00143 * 16 14 12 19 19 H 1.48500 * 109.47044 * 299.99899 * 16 14 12 20 20 C 1.48863 * 122.11797 * 93.89095 * 11 10 9 21 21 C 1.43617 * 119.96890 * 355.26497 * 7 5 3 22 22 N 1.46907 * 109.46574 * 177.18751 * 3 2 1 23 23 C 1.46908 * 110.99436 * 180.62691 * 22 3 2 24 24 C 1.46900 * 111.00162 * 304.57736 * 22 3 2 25 25 H 1.09001 * 109.47145 * 183.82107 * 1 2 3 26 26 H 1.08993 * 109.47351 * 303.82074 * 1 2 3 27 27 H 1.08997 * 109.47368 * 63.82738 * 1 2 3 28 28 H 1.08999 * 109.47201 * 239.99930 * 2 1 3 29 29 H 1.09002 * 109.46939 * 119.99888 * 2 1 3 30 30 H 1.09009 * 109.32303 * 342.20591 * 8 7 5 31 31 H 1.09005 * 109.18730 * 222.65066 * 8 7 5 32 32 H 1.08997 * 109.00816 * 297.68729 * 9 8 7 33 33 H 1.09007 * 109.00501 * 178.90762 * 9 8 7 34 34 H 1.08997 * 109.76813 * 162.05160 * 10 9 8 35 35 H 1.09002 * 109.81089 * 41.29745 * 10 9 8 36 36 H 0.97001 * 120.00139 * 358.48079 * 15 14 12 37 37 H 1.08994 * 109.48235 * 80.34711 * 20 11 10 38 38 H 1.08999 * 109.47512 * 200.37778 * 20 11 10 39 39 H 1.09000 * 108.87938 * 31.46250 * 21 7 5 40 40 H 1.09003 * 108.87492 * 149.90717 * 21 7 5 41 41 H 1.08997 * 109.46683 * 64.76144 * 23 22 3 42 42 H 1.09003 * 109.46868 * 184.75811 * 23 22 3 43 43 H 1.08998 * 109.47020 * 304.75640 * 23 22 3 44 44 H 1.09000 * 109.46872 * 65.59347 * 24 22 3 45 45 H 1.09004 * 109.46901 * 185.58936 * 24 22 3 46 46 H 1.09001 * 109.46883 * 305.59004 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6361 1.9706 0.8637 5 6 1.5954 2.1324 -1.2639 6 8 1.9036 1.6762 -2.3444 7 7 0.8551 3.2565 -1.1933 8 6 0.5065 3.9924 -2.4317 9 6 -0.8863 3.7151 -2.8165 10 6 -1.8752 4.1025 -1.7043 11 7 -1.8479 3.0698 -0.7088 12 6 -2.6582 1.9770 -0.8652 13 1 -2.7584 1.5137 -1.8356 14 6 -3.3506 1.4647 0.2233 15 7 -3.4787 2.1828 1.3189 16 14 -4.1006 -0.2437 0.1333 17 1 -4.7817 -0.5535 1.4161 18 1 -3.0293 -1.2422 -0.1126 19 1 -5.0875 -0.2932 -0.9751 20 6 -0.9717 3.1509 0.4919 21 6 0.4045 3.7399 0.0818 22 7 3.5074 1.4430 0.0680 23 6 4.0331 2.8147 0.0849 24 6 3.9808 0.6834 1.2329 25 1 -0.3633 -1.0254 0.0685 26 1 -0.3634 0.5719 0.8537 27 1 -0.3634 0.4533 -0.9223 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.1722 3.6800 -3.2364 31 1 0.6269 5.0619 -2.2587 32 1 -0.9906 2.6513 -3.0297 33 1 -1.1252 4.2812 -3.7169 34 1 -2.8798 4.1891 -2.1180 35 1 -1.5769 5.0516 -1.2589 36 1 -3.0705 3.0611 1.3737 37 1 -1.4376 3.7932 1.2392 38 1 -0.8309 2.1529 0.9071 39 1 1.1416 3.4752 0.8399 40 1 0.3211 4.8258 0.0378 41 1 3.7114 3.3158 0.9978 42 1 5.1222 2.7868 0.0501 43 1 3.6557 3.3591 -0.7808 44 1 3.7202 -0.3680 1.1113 45 1 5.0631 0.7823 1.3157 46 1 3.5102 1.0724 2.1358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981438423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -15.400162 kcal Electronic energy + Delta-G solvation = -25561.895974 eV Core-core repulsion = 22293.968146 eV Total energy + Delta-G solvation = -3267.927827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70325 -39.07457 -37.98334 -36.13295 -34.69150 -33.90026 -32.62858 -29.50787 -28.66906 -28.41619 -26.75837 -25.54556 -24.33813 -23.73674 -21.84004 -21.48918 -19.63500 -19.31637 -18.47478 -17.42835 -17.26406 -16.24001 -16.14255 -15.84460 -15.64816 -15.57766 -15.27710 -14.81397 -14.70410 -14.39689 -14.19414 -13.88903 -13.66535 -13.55160 -13.30745 -13.15290 -13.08599 -12.74863 -12.72802 -12.56426 -12.33245 -12.05960 -12.02711 -11.97260 -11.85132 -11.74765 -11.55245 -11.13433 -10.67016 -10.40405 -9.62211 -9.31917 -8.69153 -8.03838 -5.49930 1.54766 1.58191 1.59364 1.77782 2.01282 2.62477 2.97540 3.30961 3.46534 3.59364 3.81716 3.87611 4.09830 4.11246 4.18652 4.19552 4.34805 4.39054 4.40596 4.47850 4.50138 4.57728 4.62036 4.68604 4.69630 4.75279 4.83905 4.90905 4.92841 4.97689 5.01690 5.06996 5.12403 5.20258 5.27408 5.41387 5.53570 5.70267 5.84944 6.00251 6.03556 6.48317 6.57653 7.23623 7.27701 7.86201 8.30873 9.10249 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.007751 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.308768 B = 3611.715391 C = 4444.644014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C 0.072 3.928 4 H 0.067 0.933 5 C 0.531 3.469 6 O -0.578 6.578 7 N -0.587 5.587 8 C 0.129 3.871 9 C -0.151 4.151 10 C 0.162 3.838 11 N -0.602 5.602 12 C -0.337 4.337 13 H 0.018 0.982 14 C -0.046 4.046 15 N -0.944 5.944 16 Si 1.091 2.909 17 H -0.288 1.288 18 H -0.276 1.276 19 H -0.285 1.285 20 C 0.132 3.868 21 C 0.095 3.905 22 N -0.547 5.547 23 C 0.024 3.976 24 C 0.022 3.978 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.023 0.977 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.054 0.946 36 H 0.262 0.738 37 H 0.022 0.978 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.756 3.253 1.254 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.039 4.039 4 H 0.085 0.915 5 C 0.319 3.681 6 O -0.457 6.457 7 N -0.318 5.318 8 C 0.007 3.993 9 C -0.192 4.192 10 C 0.035 3.965 11 N -0.326 5.326 12 C -0.468 4.468 13 H 0.036 0.964 14 C -0.245 4.245 15 N -0.586 5.586 16 Si 0.917 3.083 17 H -0.214 1.214 18 H -0.202 1.202 19 H -0.212 1.212 20 C 0.006 3.994 21 C -0.031 4.031 22 N -0.273 5.273 23 C -0.124 4.124 24 C -0.125 4.125 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.206 1.710 1.097 13.362 hybrid contribution -0.084 1.396 -0.392 1.453 sum 13.122 3.106 0.705 13.503 Atomic orbital electron populations 1.21761 0.95037 1.01321 1.01568 1.21502 0.95188 0.93880 1.03361 1.21825 0.89666 0.97678 0.94731 0.91524 1.20611 0.77080 0.79510 0.90863 1.90587 1.58839 1.64605 1.31656 1.47530 1.50605 1.25592 1.08098 1.20645 0.95669 0.96506 0.86448 1.21610 0.96747 1.00367 1.00447 1.20409 0.95892 0.90777 0.89403 1.43673 1.44963 1.20129 1.23819 1.19651 1.23271 1.07728 0.96114 0.96446 1.26833 0.96563 1.06658 0.94442 1.70904 1.43759 1.12952 1.30944 0.83178 0.76319 0.73241 0.75568 1.21414 1.20225 1.21176 1.22345 0.88847 0.99210 0.88981 1.21977 0.96085 1.00045 0.84978 1.61834 1.06013 1.15825 1.43618 1.22455 1.01763 0.87872 1.00340 1.22548 1.01615 0.98835 0.89503 0.92606 0.92946 0.94669 0.92082 0.88550 0.91241 0.88503 0.95818 0.90086 0.95277 0.92770 0.92646 0.95994 0.93058 0.89441 0.89184 0.94033 0.89099 0.93445 0.90673 0.89193 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.22 71.98 0.66 -4.79 16 2 C -0.10 -3.30 5.06 30.59 0.15 -3.14 16 3 C 0.07 2.26 1.62 44.17 0.07 2.34 16 4 H 0.07 2.01 5.36 -2.39 -0.01 2.00 16 5 C 0.53 19.78 4.07 87.65 0.36 20.13 16 6 O -0.58 -25.87 16.29 -3.02 -0.05 -25.92 16 7 N -0.59 -19.96 2.46 -830.50 -2.04 -22.00 16 8 C 0.13 4.09 5.67 84.23 0.48 4.57 16 9 C -0.15 -5.44 5.64 29.04 0.16 -5.27 16 10 C 0.16 6.46 5.63 87.21 0.49 6.95 16 11 N -0.60 -27.88 2.22 -697.40 -1.55 -29.43 16 12 C -0.34 -18.08 8.38 84.03 0.70 -17.38 16 13 H 0.02 1.03 7.88 -2.91 -0.02 1.01 16 14 C -0.05 -2.51 4.97 84.86 0.42 -2.09 16 15 N -0.94 -54.28 13.23 21.65 0.29 -53.99 16 16 Si 1.09 50.70 29.95 68.60 2.05 52.76 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 C 0.13 5.42 5.18 86.68 0.45 5.87 16 21 C 0.09 2.94 4.97 87.67 0.44 3.38 16 22 N -0.55 -14.58 4.88 -927.69 -4.53 -19.10 16 23 C 0.02 0.53 9.37 127.69 1.20 1.72 16 24 C 0.02 0.43 8.95 127.69 1.14 1.58 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 2.16 5.61 -2.39 -0.01 2.14 16 27 H 0.03 1.63 6.79 -2.39 -0.02 1.61 16 28 H 0.06 2.17 7.98 -2.39 -0.02 2.15 16 29 H 0.10 2.53 6.30 -2.39 -0.02 2.52 16 30 H 0.07 2.34 7.18 -2.38 -0.02 2.32 16 31 H 0.10 2.40 8.05 -2.38 -0.02 2.38 16 32 H 0.02 1.05 7.91 -2.39 -0.02 1.03 16 33 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.03 1.25 8.02 -2.39 -0.02 1.23 16 35 H 0.05 1.88 7.59 -2.39 -0.02 1.86 16 36 H 0.26 15.00 5.75 -92.71 -0.53 14.47 16 37 H 0.02 0.96 6.83 -2.39 -0.02 0.95 16 38 H 0.05 2.32 4.58 -2.39 -0.01 2.31 16 39 H 0.09 2.36 5.74 -2.39 -0.01 2.35 16 40 H 0.09 2.38 7.73 -2.39 -0.02 2.36 16 41 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.05 1.24 6.95 -2.39 -0.02 1.22 16 44 H 0.07 1.46 6.51 -2.39 -0.02 1.44 16 45 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 46 H 0.04 0.67 8.13 -2.39 -0.02 0.65 16 Total: -1.00 -68.02 340.61 2.09 -65.93 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.19 Total: 17.90 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 6.73 Total: 13.86 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -7.83 Total: -124.52 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.76 kcal Total: -68.02 2.09 -65.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981438423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.530 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds