Wall clock time and date at job start Wed Apr 15 2020 11:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 H 1.08993 * 109.47234 * 303.07656 * 3 2 1 5 5 C 1.50693 * 109.47113 * 183.07523 * 3 2 1 6 6 O 1.21293 * 120.00079 * 263.69903 * 5 3 2 7 7 N 1.34774 * 120.00535 * 83.70198 * 5 3 2 8 8 C 1.46930 * 120.62348 * 359.72047 * 7 5 3 9 9 C 1.52761 * 109.00672 * 233.58130 * 8 7 5 10 10 C 1.53041 * 109.38512 * 305.59132 * 9 8 7 11 11 C 1.53037 * 109.53744 * 61.23799 * 10 9 8 12 12 H 1.09007 * 109.49992 * 58.58790 * 11 10 9 13 13 N 1.46499 * 109.52408 * 178.66784 * 11 10 9 14 14 C 1.36937 * 120.00530 * 274.85306 * 13 11 10 15 15 H 1.08002 * 119.99568 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00731 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00665 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99658 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47189 * 90.00217 * 18 16 14 20 20 H 1.48500 * 109.47153 * 209.99952 * 18 16 14 21 21 H 1.48500 * 109.47220 * 330.00029 * 18 16 14 22 22 C 1.46923 * 120.63856 * 179.97438 * 7 5 3 23 23 N 1.46901 * 109.46770 * 63.07553 * 3 2 1 24 24 C 1.46903 * 111.00072 * 276.72546 * 23 3 2 25 25 C 1.46905 * 111.00124 * 40.68022 * 23 3 2 26 26 H 1.08996 * 109.46860 * 280.56895 * 1 2 3 27 27 H 1.08999 * 109.47404 * 40.56875 * 1 2 3 28 28 H 1.08997 * 109.47027 * 160.57092 * 1 2 3 29 29 H 1.09004 * 109.46733 * 240.00469 * 2 1 3 30 30 H 1.08994 * 109.47541 * 120.00489 * 2 1 3 31 31 H 1.08995 * 109.59118 * 353.41660 * 8 7 5 32 32 H 1.08998 * 109.58723 * 113.84865 * 8 7 5 33 33 H 1.08996 * 109.56862 * 185.55307 * 9 8 7 34 34 H 1.09001 * 109.38699 * 65.51414 * 9 8 7 35 35 H 1.09001 * 109.46153 * 301.22046 * 10 9 8 36 36 H 1.09000 * 109.46025 * 181.25959 * 10 9 8 37 37 H 0.97001 * 120.00389 * 94.85706 * 13 11 10 38 38 H 0.96999 * 120.00611 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.58961 * 246.16022 * 22 7 5 40 40 H 1.09002 * 109.58553 * 6.43649 * 22 7 5 41 41 H 1.09003 * 109.46965 * 67.65309 * 24 23 3 42 42 H 1.09000 * 109.46736 * 187.65125 * 24 23 3 43 43 H 1.09000 * 109.47115 * 307.65364 * 24 23 3 44 44 H 1.09001 * 109.46916 * 52.83688 * 25 23 3 45 45 H 1.08993 * 109.47117 * 172.84222 * 25 23 3 46 46 H 1.08997 * 109.46752 * 292.83989 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6324 1.9720 -0.8611 5 6 3.5450 1.4432 -0.0762 6 8 4.2036 1.5400 0.9377 7 7 4.1594 1.3362 -1.2710 8 6 3.3753 1.2121 -2.5074 9 6 3.8459 -0.0232 -3.2730 10 6 5.3580 0.0610 -3.4930 11 6 6.0712 0.0931 -2.1394 12 1 5.8159 -0.8021 -1.5723 13 7 7.5201 0.1417 -2.3503 14 6 8.2235 -1.0175 -2.5415 15 1 7.7100 -1.9676 -2.5373 16 6 9.5962 -0.9715 -2.7420 17 7 10.2722 -2.0857 -2.9263 18 14 10.4843 0.6719 -2.7501 19 1 10.9248 1.0034 -1.3712 20 1 11.6689 0.5900 -3.6418 21 1 9.5652 1.7288 -3.2437 22 6 5.6258 1.3359 -1.3615 23 7 1.6119 2.1132 1.2349 24 6 0.2403 2.6236 1.1085 25 6 1.7351 1.2156 2.3913 26 1 -0.3633 0.1885 1.0102 27 1 -0.3634 0.7806 -0.6683 28 1 -0.3633 -0.9691 -0.3418 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.3187 1.1070 -2.2611 32 1 3.5225 2.0987 -3.1240 33 1 3.3400 -0.0697 -4.2373 34 1 3.6116 -0.9177 -2.6958 35 1 5.5941 0.9682 -4.0494 36 1 5.6917 -0.8089 -4.0587 37 1 7.9813 0.9951 -2.3545 38 1 11.2316 -2.0535 -3.0659 39 1 5.9600 2.2329 -1.8829 40 1 6.0538 1.3152 -0.3592 41 1 -0.4545 1.7862 1.0433 42 1 -0.0032 3.2308 1.9803 43 1 0.1608 3.2325 0.2079 44 1 2.7452 0.8076 2.4285 45 1 1.5342 1.7725 3.3065 46 1 1.0173 0.4008 2.2969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999495034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:04 Heat of formation + Delta-G solvation = -2.755493 kcal Electronic energy + Delta-G solvation = -23922.003956 eV Core-core repulsion = 20654.624443 eV Total energy + Delta-G solvation = -3267.379513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.58032 -38.40311 -36.92153 -34.67391 -32.63157 -32.05677 -31.41221 -29.46823 -28.23356 -27.70993 -25.12205 -23.72737 -23.06728 -21.97586 -21.44187 -20.01824 -18.70215 -17.63750 -17.42132 -16.52406 -15.62579 -15.46575 -14.79502 -14.69747 -14.57347 -14.17084 -13.89359 -13.69295 -13.51599 -13.10812 -12.89139 -12.77875 -12.67732 -12.48287 -12.27925 -12.05182 -11.90650 -11.80401 -11.48392 -11.29458 -11.12738 -11.06622 -10.99718 -10.67191 -10.49228 -10.39622 -10.08462 -9.60684 -9.49837 -8.93605 -8.44309 -8.33061 -7.29529 -5.77791 -3.14324 2.73303 2.97458 3.38481 3.42001 3.46535 3.88354 4.39521 4.56769 4.59029 4.63641 4.83823 4.96148 5.00697 5.06011 5.10972 5.16158 5.26111 5.30101 5.37759 5.44410 5.45179 5.49763 5.51548 5.59837 5.64620 5.67187 5.72212 5.77269 5.88457 5.91641 6.02731 6.06516 6.12190 6.31019 6.44408 6.61027 6.74900 6.82350 6.87698 6.94827 7.56919 7.97161 8.35980 8.40744 9.18449 9.90948 10.09890 11.40342 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.028060 B = 0.004027 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.615058 B = 6951.418658 C = 7289.104990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C 0.067 3.933 4 H 0.100 0.900 5 C 0.523 3.477 6 O -0.527 6.527 7 N -0.606 5.606 8 C 0.106 3.894 9 C -0.133 4.133 10 C -0.137 4.137 11 C 0.173 3.827 12 H 0.058 0.942 13 N -0.745 5.745 14 C -0.243 4.243 15 H 0.090 0.910 16 C 0.006 3.994 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.104 3.896 23 N -0.523 5.523 24 C 0.008 3.992 25 C 0.018 3.982 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.714 7.853 3.296 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.193 4.193 3 C -0.045 4.045 4 H 0.117 0.883 5 C 0.309 3.691 6 O -0.402 6.402 7 N -0.340 5.340 8 C -0.017 4.017 9 C -0.172 4.172 10 C -0.178 4.178 11 C 0.063 3.937 12 H 0.076 0.924 13 N -0.388 5.388 14 C -0.373 4.373 15 H 0.108 0.892 16 C -0.190 4.190 17 N -0.581 5.581 18 Si 0.714 3.286 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.019 4.019 23 N -0.247 5.247 24 C -0.140 4.140 25 C -0.129 4.129 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -22.946 8.075 3.923 24.640 hybrid contribution 0.256 0.440 -0.413 0.656 sum -22.689 8.516 3.510 24.488 Atomic orbital electron populations 1.22087 0.95027 1.02185 1.01920 1.22174 0.96666 0.96247 1.04224 1.21779 0.93011 0.95050 0.94660 0.88261 1.20372 0.89613 0.76100 0.82986 1.90660 1.66623 1.48730 1.34168 1.48060 1.07211 1.72689 1.06083 1.21727 0.95080 0.99054 0.85874 1.21858 0.98098 0.97426 0.99818 1.22240 0.92598 1.02498 1.00440 1.20455 0.84543 0.95643 0.93068 0.92392 1.42676 1.02205 1.05994 1.87912 1.19028 0.90283 0.86361 1.41651 0.89201 1.24656 0.96181 0.96418 1.01695 1.69696 1.07396 1.25227 1.55759 0.86561 0.79597 0.84651 0.77789 1.20950 1.21729 1.20301 1.21977 0.78293 0.98821 1.02761 1.61804 1.23065 1.37525 1.02281 1.22811 0.88662 0.99921 1.02559 1.22581 1.02871 0.94924 0.92553 0.91989 0.92243 0.92183 0.90502 0.90289 0.90289 0.91440 0.91167 0.91740 0.92567 0.91100 0.80584 0.93015 0.91988 0.88846 0.93745 0.91374 0.91662 0.89617 0.91698 0.95236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.10 37.16 0.30 -0.77 16 2 C -0.15 -1.43 4.62 -26.73 -0.12 -1.55 16 3 C 0.07 0.73 1.45 -68.87 -0.10 0.63 16 4 H 0.10 0.90 6.08 -51.93 -0.32 0.58 16 5 C 0.52 7.78 6.87 -10.99 -0.08 7.71 16 6 O -0.53 -9.90 14.15 5.55 0.08 -9.82 16 7 N -0.61 -8.60 2.98 -173.01 -0.52 -9.11 16 8 C 0.11 1.13 5.92 -3.93 -0.02 1.11 16 9 C -0.13 -1.58 6.06 -26.83 -0.16 -1.74 16 10 C -0.14 -2.23 5.47 -26.69 -0.15 -2.38 16 11 C 0.17 3.32 2.92 -67.79 -0.20 3.12 16 12 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 13 N -0.75 -17.58 4.93 -53.29 -0.26 -17.84 16 14 C -0.24 -6.84 10.41 -15.06 -0.16 -7.00 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 16 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 17 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 18 Si 0.88 22.20 27.74 -169.99 -4.71 17.49 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 22 C 0.10 1.78 5.91 -3.69 -0.02 1.76 16 23 N -0.52 -5.85 4.68 -244.59 -1.14 -7.00 16 24 C 0.01 0.07 8.83 60.07 0.53 0.60 16 25 C 0.02 0.20 8.02 60.07 0.48 0.68 16 26 H 0.06 0.42 4.93 -51.93 -0.26 0.17 16 27 H 0.06 0.36 7.33 -51.93 -0.38 -0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.71 7.34 -51.93 -0.38 0.33 16 30 H 0.08 0.84 6.26 -51.93 -0.33 0.51 16 31 H 0.08 0.65 4.96 -51.93 -0.26 0.39 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.36 8.40 5.66 -40.82 -0.23 8.16 16 38 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.80 7.00 -51.93 -0.36 1.44 16 41 H 0.04 0.30 4.30 -51.93 -0.22 0.07 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 44 H 0.09 1.17 6.24 -51.93 -0.32 0.85 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.03 0.27 5.20 -51.93 -0.27 0.00 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -33.18 340.16 -8.00 -41.18 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.55 Total: 6.27 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 0.21 Total: 2.26 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -1.15 Total: -62.51 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.18 -8.00 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999495034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.429 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds