Wall clock time and date at job start Wed Apr 15 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 H 1.08993 * 109.47234 * 303.07656 * 3 2 1 5 5 C 1.50693 * 109.47113 * 183.07523 * 3 2 1 6 6 O 1.21293 * 120.00079 * 263.69903 * 5 3 2 7 7 N 1.34774 * 120.00535 * 83.70198 * 5 3 2 8 8 C 1.46930 * 120.62348 * 359.72047 * 7 5 3 9 9 C 1.52761 * 109.00672 * 233.58130 * 8 7 5 10 10 C 1.53041 * 109.38512 * 305.59132 * 9 8 7 11 11 C 1.53037 * 109.53744 * 61.23799 * 10 9 8 12 12 H 1.09007 * 109.49992 * 58.58790 * 11 10 9 13 13 N 1.46499 * 109.52408 * 178.66784 * 11 10 9 14 14 C 1.36937 * 120.00530 * 274.85306 * 13 11 10 15 15 H 1.08002 * 119.99568 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00731 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00665 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99658 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47189 * 90.00217 * 18 16 14 20 20 H 1.48500 * 109.47153 * 209.99952 * 18 16 14 21 21 H 1.48500 * 109.47220 * 330.00029 * 18 16 14 22 22 C 1.46923 * 120.63856 * 179.97438 * 7 5 3 23 23 N 1.46901 * 109.46770 * 63.07553 * 3 2 1 24 24 C 1.46903 * 111.00072 * 276.72546 * 23 3 2 25 25 C 1.46905 * 111.00124 * 40.68022 * 23 3 2 26 26 H 1.08996 * 109.46860 * 280.56895 * 1 2 3 27 27 H 1.08999 * 109.47404 * 40.56875 * 1 2 3 28 28 H 1.08997 * 109.47027 * 160.57092 * 1 2 3 29 29 H 1.09004 * 109.46733 * 240.00469 * 2 1 3 30 30 H 1.08994 * 109.47541 * 120.00489 * 2 1 3 31 31 H 1.08995 * 109.59118 * 353.41660 * 8 7 5 32 32 H 1.08998 * 109.58723 * 113.84865 * 8 7 5 33 33 H 1.08996 * 109.56862 * 185.55307 * 9 8 7 34 34 H 1.09001 * 109.38699 * 65.51414 * 9 8 7 35 35 H 1.09001 * 109.46153 * 301.22046 * 10 9 8 36 36 H 1.09000 * 109.46025 * 181.25959 * 10 9 8 37 37 H 0.97001 * 120.00389 * 94.85706 * 13 11 10 38 38 H 0.96999 * 120.00611 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.58961 * 246.16022 * 22 7 5 40 40 H 1.09002 * 109.58553 * 6.43649 * 22 7 5 41 41 H 1.09003 * 109.46965 * 67.65309 * 24 23 3 42 42 H 1.09000 * 109.46736 * 187.65125 * 24 23 3 43 43 H 1.09000 * 109.47115 * 307.65364 * 24 23 3 44 44 H 1.09001 * 109.46916 * 52.83688 * 25 23 3 45 45 H 1.08993 * 109.47117 * 172.84222 * 25 23 3 46 46 H 1.08997 * 109.46752 * 292.83989 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6324 1.9720 -0.8611 5 6 3.5450 1.4432 -0.0762 6 8 4.2036 1.5400 0.9377 7 7 4.1594 1.3362 -1.2710 8 6 3.3753 1.2121 -2.5074 9 6 3.8459 -0.0232 -3.2730 10 6 5.3580 0.0610 -3.4930 11 6 6.0712 0.0931 -2.1394 12 1 5.8159 -0.8021 -1.5723 13 7 7.5201 0.1417 -2.3503 14 6 8.2235 -1.0175 -2.5415 15 1 7.7100 -1.9676 -2.5373 16 6 9.5962 -0.9715 -2.7420 17 7 10.2722 -2.0857 -2.9263 18 14 10.4843 0.6719 -2.7501 19 1 10.9248 1.0034 -1.3712 20 1 11.6689 0.5900 -3.6418 21 1 9.5652 1.7288 -3.2437 22 6 5.6258 1.3359 -1.3615 23 7 1.6119 2.1132 1.2349 24 6 0.2403 2.6236 1.1085 25 6 1.7351 1.2156 2.3913 26 1 -0.3633 0.1885 1.0102 27 1 -0.3634 0.7806 -0.6683 28 1 -0.3633 -0.9691 -0.3418 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.3187 1.1070 -2.2611 32 1 3.5225 2.0987 -3.1240 33 1 3.3400 -0.0697 -4.2373 34 1 3.6116 -0.9177 -2.6958 35 1 5.5941 0.9682 -4.0494 36 1 5.6917 -0.8089 -4.0587 37 1 7.9813 0.9951 -2.3545 38 1 11.2316 -2.0535 -3.0659 39 1 5.9600 2.2329 -1.8829 40 1 6.0538 1.3152 -0.3592 41 1 -0.4545 1.7862 1.0433 42 1 -0.0032 3.2308 1.9803 43 1 0.1608 3.2325 0.2079 44 1 2.7452 0.8076 2.4285 45 1 1.5342 1.7725 3.3065 46 1 1.0173 0.4008 2.2969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999495034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:03 Heat of formation + Delta-G solvation = -27.459900 kcal Electronic energy + Delta-G solvation = -23923.075219 eV Core-core repulsion = 20654.624443 eV Total energy + Delta-G solvation = -3268.450777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.64084 -39.47382 -38.12808 -36.34794 -34.03875 -33.11035 -32.93032 -30.89111 -29.21244 -28.54066 -26.31118 -25.50753 -23.76626 -23.34733 -22.47683 -21.40423 -20.01435 -19.43010 -18.46183 -17.41145 -16.86244 -16.57881 -16.30653 -15.93281 -15.67163 -15.36574 -15.25739 -15.03898 -14.72217 -14.52154 -14.07847 -13.96307 -13.75483 -13.39999 -13.16967 -13.06407 -12.99103 -12.80895 -12.65933 -12.49236 -12.45662 -12.20905 -12.17434 -11.90543 -11.84330 -11.79581 -11.74424 -11.65994 -10.97488 -10.62167 -9.68336 -9.32908 -9.10765 -8.05118 -5.39705 1.36093 1.40379 1.46715 1.62520 1.88713 2.46324 3.07744 3.25953 3.47857 3.55844 3.81523 3.90335 3.97597 4.04763 4.11558 4.18968 4.29015 4.33452 4.36366 4.41975 4.50254 4.58927 4.65680 4.74018 4.75702 4.79560 4.81533 4.85928 5.00869 5.04783 5.06296 5.12286 5.14574 5.17328 5.36621 5.39176 5.47573 5.52696 5.74017 5.97329 6.14268 6.18229 6.48664 7.03505 7.22934 7.78129 7.97903 9.16336 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.028060 B = 0.004027 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.615058 B = 6951.418658 C = 7289.104990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C 0.076 3.924 4 H 0.129 0.871 5 C 0.513 3.487 6 O -0.576 6.576 7 N -0.606 5.606 8 C 0.103 3.897 9 C -0.124 4.124 10 C -0.130 4.130 11 C 0.170 3.830 12 H 0.029 0.971 13 N -0.750 5.750 14 C -0.230 4.230 15 H 0.054 0.946 16 C -0.061 4.061 17 N -0.983 5.983 18 Si 0.954 3.046 19 H -0.283 1.283 20 H -0.293 1.293 21 H -0.248 1.248 22 C 0.116 3.884 23 N -0.547 5.547 24 C 0.008 3.992 25 C 0.024 3.976 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.366 0.634 38 H 0.259 0.741 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.981 10.256 2.080 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C -0.035 4.035 4 H 0.146 0.854 5 C 0.302 3.698 6 O -0.455 6.455 7 N -0.339 5.339 8 C -0.018 4.018 9 C -0.163 4.163 10 C -0.170 4.170 11 C 0.062 3.938 12 H 0.047 0.953 13 N -0.394 5.394 14 C -0.361 4.361 15 H 0.072 0.928 16 C -0.253 4.253 17 N -0.634 5.634 18 Si 0.781 3.219 19 H -0.209 1.209 20 H -0.219 1.219 21 H -0.173 1.173 22 C -0.009 4.009 23 N -0.271 5.271 24 C -0.138 4.138 25 C -0.124 4.124 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.199 0.801 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.305 10.506 2.687 28.452 hybrid contribution 1.207 -0.390 0.015 1.269 sum -25.097 10.116 2.702 27.194 Atomic orbital electron populations 1.22050 0.92605 1.03404 1.02521 1.22150 0.98606 0.94874 1.03372 1.21790 0.89608 0.96430 0.95711 0.85362 1.21317 0.91518 0.74765 0.82235 1.90642 1.68044 1.50873 1.35918 1.48173 1.05980 1.72205 1.07538 1.22035 0.96327 0.99153 0.84272 1.21820 0.94611 0.98007 1.01845 1.22058 0.95679 1.01663 0.97557 1.20617 0.82546 0.95711 0.94966 0.95257 1.42660 1.04052 1.04612 1.88043 1.18945 0.90542 0.86672 1.39921 0.92788 1.25479 0.97091 1.00412 1.02304 1.69877 1.07596 1.27946 1.57945 0.85427 0.78343 0.80497 0.77629 1.20901 1.21940 1.17265 1.21589 0.80704 0.97918 1.00641 1.61740 1.25401 1.37735 1.02199 1.22889 0.86945 1.00596 1.03415 1.22452 1.01186 0.95572 0.93158 0.91925 0.90375 0.91374 0.90255 0.92436 0.86722 0.89311 0.87693 0.92320 0.91567 0.93905 0.80088 0.93264 0.90569 0.91874 0.92090 0.91177 0.90268 0.93172 0.91241 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.10 71.98 0.58 -0.88 16 2 C -0.15 -2.43 4.62 30.59 0.14 -2.29 16 3 C 0.08 1.46 1.45 44.17 0.06 1.52 16 4 H 0.13 1.68 6.08 -2.39 -0.01 1.66 16 5 C 0.51 14.84 6.87 87.65 0.60 15.44 16 6 O -0.58 -22.34 14.15 -3.07 -0.04 -22.39 16 7 N -0.61 -16.20 2.98 -819.67 -2.44 -18.64 16 8 C 0.10 1.79 5.92 86.22 0.51 2.31 16 9 C -0.12 -2.57 6.06 30.53 0.19 -2.38 16 10 C -0.13 -4.07 5.47 30.62 0.17 -3.90 16 11 C 0.17 6.62 2.92 45.08 0.13 6.75 16 12 H 0.03 1.29 8.08 -2.38 -0.02 1.27 16 13 N -0.75 -35.85 4.93 -322.52 -1.59 -37.44 16 14 C -0.23 -13.38 10.41 84.03 0.88 -12.51 16 15 H 0.05 3.46 8.06 -2.91 -0.02 3.44 16 16 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 17 N -0.98 -64.02 13.97 21.65 0.30 -63.71 16 18 Si 0.95 46.33 27.74 68.60 1.90 48.23 16 19 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 22 C 0.12 3.92 5.91 86.38 0.51 4.43 16 23 N -0.55 -11.13 4.68 -927.73 -4.34 -15.47 16 24 C 0.01 0.10 8.83 127.69 1.13 1.23 16 25 C 0.02 0.52 8.02 127.69 1.02 1.54 16 26 H 0.06 0.63 4.93 -2.39 -0.01 0.61 16 27 H 0.08 0.51 7.33 -2.39 -0.02 0.50 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.23 7.34 -2.38 -0.02 1.22 16 30 H 0.06 1.18 6.26 -2.39 -0.01 1.17 16 31 H 0.11 1.24 4.96 -2.39 -0.01 1.23 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.37 16.72 5.66 -92.71 -0.52 16.20 16 38 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 39 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.06 2.52 7.00 -2.39 -0.02 2.51 16 41 H 0.06 0.56 4.30 -2.39 -0.01 0.55 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 0.77 7.87 -2.39 -0.02 0.75 16 44 H 0.05 1.43 6.24 -2.39 -0.01 1.42 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.05 0.80 5.20 -2.39 -0.01 0.79 16 Total: -1.00 -77.34 340.16 0.57 -76.77 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.39 Total: 24.60 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 6.39 Total: 8.04 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -8.07 Total: -135.26 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.04 Total: -22.39 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -77.34 0.57 -76.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999495034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.310 kcal (2) G-P(sol) polarization free energy of solvation -77.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds