Wall clock time and date at job start Wed Apr 15 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99632 * 2 1 3 5 5 C 1.46848 * 110.99726 * 55.79210 * 4 2 1 6 6 C 1.53039 * 109.52494 * 185.84331 * 5 4 2 7 7 C 1.53118 * 109.27604 * 300.81830 * 6 5 4 8 8 C 1.50697 * 109.57630 * 177.58990 * 7 6 5 9 9 O 1.21283 * 120.00038 * 240.28539 * 8 7 6 10 10 N 1.34777 * 120.00276 * 60.28678 * 8 7 6 11 11 C 1.46500 * 120.00251 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47003 * 179.97438 * 11 10 8 13 13 N 1.46496 * 109.47171 * 179.97438 * 12 11 10 14 14 C 1.36938 * 120.00306 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99473 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00259 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00029 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99970 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46954 * 60.00325 * 18 16 14 20 20 H 1.48503 * 109.46903 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47308 * 300.00291 * 18 16 14 22 22 C 1.53124 * 109.16290 * 57.65268 * 7 6 5 23 23 C 1.46846 * 111.00217 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09005 * 109.46377 * 305.85024 * 5 4 2 32 32 H 1.08996 * 109.46627 * 65.82713 * 5 4 2 33 33 H 1.09002 * 109.50678 * 180.87866 * 6 5 4 34 34 H 1.08999 * 109.50638 * 60.75463 * 6 5 4 35 35 H 1.09002 * 109.52531 * 297.75087 * 7 6 5 36 36 H 0.97002 * 119.99330 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.46992 * 299.99445 * 11 10 8 38 38 H 1.09001 * 109.47224 * 59.99871 * 11 10 8 39 39 H 1.08993 * 109.47222 * 300.00201 * 12 11 10 40 40 H 1.09001 * 109.47004 * 60.00020 * 12 11 10 41 41 H 0.97002 * 120.00250 * 0.02562 * 13 12 11 42 42 H 0.96999 * 119.99860 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.50321 * 182.40471 * 22 7 6 44 44 H 1.09001 * 109.53105 * 62.30349 * 22 7 6 45 45 H 1.08999 * 109.46447 * 294.17563 * 23 4 2 46 46 H 1.08998 * 109.46190 * 54.16071 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 1.4685 -0.0872 -2.4184 6 6 1.8811 -0.9197 -3.6344 7 6 3.4092 -0.9738 -3.7151 8 6 3.8233 -1.8409 -4.8759 9 8 4.4935 -2.8331 -4.6830 10 7 3.4489 -1.5138 -6.1287 11 6 3.8509 -2.3570 -7.2572 12 6 3.2990 -1.7672 -8.5566 13 7 3.7015 -2.6101 -9.6851 14 6 3.3212 -2.2777 -10.9579 15 1 2.7241 -1.3943 -11.1296 16 6 3.7022 -3.0766 -12.0272 17 7 4.4286 -4.1540 -11.8177 18 14 3.1827 -2.6235 -13.7634 19 1 3.7214 -1.2831 -14.1073 20 1 3.7140 -3.6297 -14.7175 21 1 1.7001 -2.5971 -13.8455 22 6 3.9607 -1.5632 -2.4139 23 6 3.4877 -0.7116 -1.2335 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.3810 -0.0588 -2.3501 32 1 1.8522 0.9273 -2.5257 33 1 1.4849 -0.4615 -4.5407 34 1 1.4861 -1.9307 -3.5344 35 1 3.8026 0.0333 -3.8541 36 1 2.9125 -0.7204 -6.2829 37 1 4.9388 -2.3988 -7.3100 38 1 3.4550 -3.3630 -7.1182 39 1 2.2112 -1.7257 -8.5035 40 1 3.6946 -0.7611 -8.6957 41 1 4.2375 -3.4037 -9.5308 42 1 4.6945 -4.7125 -12.5649 43 1 5.0502 -1.5648 -2.4480 44 1 3.5988 -2.5844 -2.2943 45 1 3.8616 0.3060 -1.3466 46 1 3.8671 -1.1368 -0.3044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146356404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:45 Heat of formation + Delta-G solvation = -35.602003 kcal Electronic energy + Delta-G solvation = -22419.196640 eV Core-core repulsion = 19150.392796 eV Total energy + Delta-G solvation = -3268.803845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.39585 -38.97166 -35.77525 -35.11896 -33.82579 -31.58277 -31.02061 -30.60302 -27.81985 -27.59749 -25.28360 -23.47343 -23.38982 -21.58860 -21.29658 -20.08338 -19.41753 -17.45720 -17.02049 -16.37369 -15.61680 -15.50238 -15.19584 -14.82535 -14.59989 -14.40126 -14.32718 -13.91133 -13.62269 -13.24753 -13.18118 -12.94115 -12.90324 -12.52731 -12.30120 -12.12703 -11.75967 -11.49461 -11.41047 -11.30712 -11.09740 -11.07322 -10.85872 -10.79505 -10.76728 -10.55872 -10.14776 -9.81680 -9.54465 -8.96675 -8.79168 -8.56288 -6.99225 -5.79129 -3.09970 2.77247 3.30598 3.42847 3.47269 3.48677 3.54846 4.39354 4.46619 4.57107 4.59390 4.61765 4.76223 4.90095 4.98610 5.00865 5.06895 5.20850 5.25237 5.27920 5.35715 5.42016 5.46649 5.50549 5.55430 5.56754 5.58184 5.68903 5.79460 5.81209 5.86395 5.90364 5.97448 5.98181 6.17091 6.20480 6.51960 6.71539 6.77222 6.81565 6.82141 7.65191 7.66666 8.37094 8.39489 9.49553 10.04597 10.39333 11.43383 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.038655 B = 0.002480 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.176222 B =11286.590448 C =11727.887201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.188 4.188 4 N -0.532 5.532 5 C 0.051 3.949 6 C -0.108 4.108 7 C -0.107 4.107 8 C 0.515 3.485 9 O -0.541 6.541 10 N -0.723 5.723 11 C 0.110 3.890 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.096 4.096 23 C 0.055 3.945 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.398 0.602 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 11.995 25.645 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.256 5.256 5 C -0.077 4.077 6 C -0.146 4.146 7 C -0.129 4.129 8 C 0.300 3.700 9 O -0.418 6.418 10 N -0.375 5.375 11 C -0.013 4.013 12 C 0.017 3.983 13 N -0.375 5.375 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.134 4.134 23 C -0.073 4.073 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.055 0.945 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.172 10.843 25.633 28.509 hybrid contribution -0.016 1.251 -1.146 1.696 sum -6.188 12.094 24.488 28.003 Atomic orbital electron populations 1.21923 0.94311 1.02607 1.01737 1.21701 0.95746 0.92294 0.93526 1.22501 1.01636 0.98224 1.02368 1.62194 1.08090 1.53523 1.01805 1.22172 1.00398 0.95723 0.89387 1.21600 0.93212 1.02124 0.97703 1.21387 0.97517 0.99768 0.94189 1.20544 0.79675 0.85898 0.83866 1.90706 1.38630 1.27457 1.84961 1.45967 1.55314 1.29534 1.06658 1.21566 1.00330 0.94457 0.84982 1.20749 0.96863 0.94427 0.86259 1.42189 1.64149 1.29489 1.01650 1.19145 1.27489 1.07400 0.83534 0.91106 1.24786 1.00515 0.97416 0.98145 1.69659 1.41329 1.16149 1.30745 0.86219 0.78062 0.77333 0.84241 1.21202 1.21604 1.21181 1.21402 1.00580 1.00311 0.91104 1.22139 0.87313 0.98620 0.99246 0.91689 0.92358 0.92304 0.89947 0.92366 0.92375 0.92129 0.89891 0.94490 0.90856 0.90314 0.89044 0.76808 0.91390 0.91348 0.95844 0.95898 0.77999 0.93300 0.90793 0.90136 0.94537 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.84 37.16 0.33 -0.55 16 2 C 0.08 0.50 3.03 -67.71 -0.20 0.30 16 3 C -0.19 -1.11 8.50 37.16 0.32 -0.80 16 4 N -0.53 -4.31 4.68 -226.69 -1.06 -5.38 16 5 C 0.05 0.39 4.67 -3.83 -0.02 0.37 16 6 C -0.11 -0.94 5.26 -26.65 -0.14 -1.08 16 7 C -0.11 -1.08 2.59 -91.65 -0.24 -1.32 16 8 C 0.51 7.33 7.16 -10.99 -0.08 7.25 16 9 O -0.54 -10.03 15.98 5.55 0.09 -9.94 16 10 N -0.72 -9.94 5.46 -60.30 -0.33 -10.26 16 11 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 12 C 0.15 2.87 6.37 -4.04 -0.03 2.84 16 13 N -0.73 -18.75 5.60 -59.91 -0.34 -19.08 16 14 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 18 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.10 -0.98 4.68 -26.64 -0.12 -1.11 16 23 C 0.05 0.45 4.89 -3.83 -0.02 0.43 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.34 6.22 -51.93 -0.32 0.02 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.36 6.54 -51.93 -0.34 0.02 16 29 H 0.06 0.36 6.63 -51.93 -0.34 0.01 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.58 5.90 -51.93 -0.31 0.27 16 32 H 0.04 0.26 6.71 -51.93 -0.35 -0.08 16 33 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 4.30 7.96 -40.82 -0.33 3.97 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.39 10.51 7.67 -40.82 -0.31 10.20 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 45 H 0.04 0.28 6.63 -51.93 -0.34 -0.07 16 46 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -32.73 356.72 -9.11 -41.84 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.08 Total: 7.05 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.47 Total: 0.76 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -1.00 Total: -62.45 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.73 -9.11 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146356404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.243 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds