Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99632 * 2 1 3 5 5 C 1.46848 * 110.99726 * 55.79210 * 4 2 1 6 6 C 1.53039 * 109.52494 * 185.84331 * 5 4 2 7 7 C 1.53118 * 109.27604 * 300.81830 * 6 5 4 8 8 C 1.50697 * 109.57630 * 177.58990 * 7 6 5 9 9 O 1.21283 * 120.00038 * 240.28539 * 8 7 6 10 10 N 1.34777 * 120.00276 * 60.28678 * 8 7 6 11 11 C 1.46500 * 120.00251 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47003 * 179.97438 * 11 10 8 13 13 N 1.46496 * 109.47171 * 179.97438 * 12 11 10 14 14 C 1.36938 * 120.00306 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99473 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00259 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00029 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99970 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46954 * 60.00325 * 18 16 14 20 20 H 1.48503 * 109.46903 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47308 * 300.00291 * 18 16 14 22 22 C 1.53124 * 109.16290 * 57.65268 * 7 6 5 23 23 C 1.46846 * 111.00217 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09005 * 109.46377 * 305.85024 * 5 4 2 32 32 H 1.08996 * 109.46627 * 65.82713 * 5 4 2 33 33 H 1.09002 * 109.50678 * 180.87866 * 6 5 4 34 34 H 1.08999 * 109.50638 * 60.75463 * 6 5 4 35 35 H 1.09002 * 109.52531 * 297.75087 * 7 6 5 36 36 H 0.97002 * 119.99330 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.46992 * 299.99445 * 11 10 8 38 38 H 1.09001 * 109.47224 * 59.99871 * 11 10 8 39 39 H 1.08993 * 109.47222 * 300.00201 * 12 11 10 40 40 H 1.09001 * 109.47004 * 60.00020 * 12 11 10 41 41 H 0.97002 * 120.00250 * 0.02562 * 13 12 11 42 42 H 0.96999 * 119.99860 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.50321 * 182.40471 * 22 7 6 44 44 H 1.09001 * 109.53105 * 62.30349 * 22 7 6 45 45 H 1.08999 * 109.46447 * 294.17563 * 23 4 2 46 46 H 1.08998 * 109.46190 * 54.16071 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 1.4685 -0.0872 -2.4184 6 6 1.8811 -0.9197 -3.6344 7 6 3.4092 -0.9738 -3.7151 8 6 3.8233 -1.8409 -4.8759 9 8 4.4935 -2.8331 -4.6830 10 7 3.4489 -1.5138 -6.1287 11 6 3.8509 -2.3570 -7.2572 12 6 3.2990 -1.7672 -8.5566 13 7 3.7015 -2.6101 -9.6851 14 6 3.3212 -2.2777 -10.9579 15 1 2.7241 -1.3943 -11.1296 16 6 3.7022 -3.0766 -12.0272 17 7 4.4286 -4.1540 -11.8177 18 14 3.1827 -2.6235 -13.7634 19 1 3.7214 -1.2831 -14.1073 20 1 3.7140 -3.6297 -14.7175 21 1 1.7001 -2.5971 -13.8455 22 6 3.9607 -1.5632 -2.4139 23 6 3.4877 -0.7116 -1.2335 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.3810 -0.0588 -2.3501 32 1 1.8522 0.9273 -2.5257 33 1 1.4849 -0.4615 -4.5407 34 1 1.4861 -1.9307 -3.5344 35 1 3.8026 0.0333 -3.8541 36 1 2.9125 -0.7204 -6.2829 37 1 4.9388 -2.3988 -7.3100 38 1 3.4550 -3.3630 -7.1182 39 1 2.2112 -1.7257 -8.5035 40 1 3.6946 -0.7611 -8.6957 41 1 4.2375 -3.4037 -9.5308 42 1 4.6945 -4.7125 -12.5649 43 1 5.0502 -1.5648 -2.4480 44 1 3.5988 -2.5844 -2.2943 45 1 3.8616 0.3060 -1.3466 46 1 3.8671 -1.1368 -0.3044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146356404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = -59.613315 kcal Electronic energy + Delta-G solvation = -22420.237849 eV Core-core repulsion = 19150.392796 eV Total energy + Delta-G solvation = -3269.845053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.34576 -39.85925 -37.35934 -35.92310 -35.50704 -33.19944 -31.99684 -31.35424 -29.41719 -28.07024 -26.38108 -25.17510 -24.07347 -23.12950 -22.25376 -21.02373 -20.12606 -19.33084 -18.23055 -17.24334 -16.75558 -16.69953 -16.46942 -15.94080 -15.63262 -15.45983 -15.16572 -15.13336 -14.88098 -14.71947 -14.37186 -14.13989 -13.60642 -13.17082 -13.09343 -13.03560 -12.88313 -12.71719 -12.62579 -12.54436 -12.34114 -12.20079 -12.12272 -11.93229 -11.86614 -11.65677 -11.55373 -11.22796 -10.98311 -10.75233 -10.14011 -9.13198 -9.07527 -7.97099 -5.28898 1.48109 1.52096 1.58224 1.61638 2.10950 2.58007 2.97176 3.36825 3.58112 3.75574 3.83856 4.01274 4.02031 4.12652 4.20689 4.21171 4.28954 4.32334 4.40819 4.43264 4.53370 4.57289 4.66863 4.74490 4.80156 4.83474 4.90517 4.94856 5.00682 5.06093 5.09440 5.12424 5.20222 5.22254 5.32153 5.37498 5.40017 5.46248 5.48874 6.22797 6.23356 6.26401 6.54732 7.24434 7.29433 8.01314 8.24307 9.26406 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.038655 B = 0.002480 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.176222 B =11286.590448 C =11727.887201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.183 4.183 4 N -0.547 5.547 5 C 0.054 3.946 6 C -0.104 4.104 7 C -0.096 4.096 8 C 0.512 3.488 9 O -0.589 6.589 10 N -0.710 5.710 11 C 0.127 3.873 12 C 0.150 3.850 13 N -0.748 5.748 14 C -0.249 4.249 15 H 0.084 0.916 16 C -0.078 4.078 17 N -0.971 5.971 18 Si 0.981 3.019 19 H -0.275 1.275 20 H -0.297 1.297 21 H -0.275 1.275 22 C -0.094 4.094 23 C 0.062 3.938 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.416 0.584 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 14.669 26.243 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.242 4.242 4 N -0.272 5.272 5 C -0.073 4.073 6 C -0.143 4.143 7 C -0.117 4.117 8 C 0.300 3.700 9 O -0.469 6.469 10 N -0.363 5.363 11 C 0.002 3.998 12 C 0.023 3.977 13 N -0.391 5.391 14 C -0.381 4.381 15 H 0.102 0.898 16 C -0.271 4.271 17 N -0.622 5.622 18 Si 0.809 3.191 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.200 1.200 22 C -0.132 4.132 23 C -0.066 4.066 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.205 0.795 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.621 13.592 26.265 30.540 hybrid contribution 0.405 0.429 -1.234 1.368 sum -7.215 14.021 25.031 29.584 Atomic orbital electron populations 1.21900 0.93774 1.02159 1.02448 1.21738 0.96146 0.92700 0.92743 1.22445 1.01432 0.97527 1.02803 1.62172 1.07918 1.54465 1.02633 1.22167 1.00926 0.95819 0.88437 1.21603 0.91726 1.01543 0.99383 1.21398 0.98716 0.99763 0.91834 1.21343 0.78468 0.85588 0.84601 1.90690 1.40811 1.29747 1.85612 1.45777 1.55277 1.29588 1.05618 1.21129 0.99033 0.94149 0.85481 1.20841 0.97529 0.94029 0.85273 1.42440 1.64139 1.29873 1.02695 1.19621 1.26553 1.07313 0.84587 0.89850 1.25704 1.01243 0.97666 1.02443 1.69837 1.43219 1.17550 1.31555 0.85108 0.78001 0.77052 0.78942 1.20053 1.22333 1.20044 1.21352 1.00074 0.99457 0.92348 1.22041 0.87633 0.98664 0.98220 0.92702 0.92057 0.91190 0.90139 0.92587 0.92319 0.91307 0.89060 0.93249 0.89048 0.92328 0.86438 0.74649 0.93092 0.93187 0.94409 0.94434 0.79526 0.93894 0.91622 0.92748 0.93316 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.84 71.98 0.64 -0.80 16 2 C 0.07 0.84 3.03 44.92 0.14 0.98 16 3 C -0.18 -1.68 8.50 71.98 0.61 -1.07 16 4 N -0.55 -7.93 4.68 -871.11 -4.08 -12.01 16 5 C 0.05 0.68 4.67 86.33 0.40 1.08 16 6 C -0.10 -1.61 5.26 30.65 0.16 -1.45 16 7 C -0.10 -1.80 2.59 -11.46 -0.03 -1.83 16 8 C 0.51 14.35 7.16 87.66 0.63 14.98 16 9 O -0.59 -22.42 15.98 -3.04 -0.05 -22.47 16 10 N -0.71 -18.63 5.46 -463.06 -2.53 -21.16 16 11 C 0.13 4.45 5.79 86.38 0.50 4.95 16 12 C 0.15 5.75 6.37 86.38 0.55 6.31 16 13 N -0.75 -38.47 5.60 -343.47 -1.92 -40.39 16 14 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 15 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 16 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 17 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 18 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.09 -1.89 4.68 30.65 0.14 -1.75 16 23 C 0.06 0.92 4.89 86.33 0.42 1.34 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.57 6.22 -2.39 -0.01 0.55 16 26 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.54 6.54 -2.39 -0.02 0.53 16 29 H 0.06 0.54 6.63 -2.39 -0.02 0.53 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 1.03 5.90 -2.38 -0.01 1.02 16 32 H 0.05 0.53 6.71 -2.39 -0.02 0.51 16 33 H 0.09 1.08 7.67 -2.39 -0.02 1.06 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.42 7.89 7.96 -92.71 -0.74 7.16 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 42 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.37 8.04 -2.39 -0.02 1.35 16 45 H 0.05 0.62 6.63 -2.39 -0.02 0.60 16 46 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 Total: -1.00 -71.17 356.72 -1.29 -72.46 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.48 Total: 30.15 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.47 Total: 5.67 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -8.25 Total: -133.67 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -71.17 -1.29 -72.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146356404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.847 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds