Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 H 1.09005 * 109.47099 * 56.44228 * 3 2 1 5 5 C 1.50690 * 109.47207 * 176.44199 * 3 2 1 6 6 O 1.21285 * 120.00170 * 96.90367 * 5 3 2 7 7 N 1.34772 * 120.00131 * 276.90615 * 5 3 2 8 8 C 1.46506 * 120.00154 * 180.02562 * 7 5 3 9 9 H 1.09008 * 110.63956 * 323.30965 * 8 7 5 10 10 C 1.55151 * 110.72241 * 86.45092 * 8 7 5 11 11 C 1.54912 * 101.58276 * 153.86608 * 10 8 7 12 12 N 1.47422 * 104.83090 * 322.99074 * 11 10 8 13 13 C 1.36938 * 125.65146 * 204.09022 * 12 11 10 14 14 H 1.07995 * 120.00294 * 180.02562 * 13 12 11 15 15 C 1.38821 * 119.99625 * 0.02840 * 13 12 11 16 16 N 1.31615 * 119.99994 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99901 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47411 * 89.99696 * 17 15 13 19 19 H 1.48501 * 109.47041 * 210.00193 * 17 15 13 20 20 H 1.48498 * 109.47100 * 329.99372 * 17 15 13 21 21 C 1.47026 * 108.70304 * 24.12937 * 12 11 10 22 22 H 1.09003 * 109.87911 * 239.51815 * 21 12 11 23 23 C 1.52997 * 109.88271 * 118.35837 * 21 12 11 24 24 N 1.46902 * 109.46734 * 296.44162 * 3 2 1 25 25 C 1.46900 * 110.99650 * 184.55217 * 24 3 2 26 26 C 1.46898 * 111.00320 * 308.50632 * 24 3 2 27 27 H 1.08994 * 109.47431 * 305.16950 * 1 2 3 28 28 H 1.08997 * 109.46677 * 65.17160 * 1 2 3 29 29 H 1.08992 * 109.46947 * 185.16813 * 1 2 3 30 30 H 1.08995 * 109.47350 * 240.00020 * 2 1 3 31 31 H 1.09001 * 109.47033 * 119.99474 * 2 1 3 32 32 H 0.97001 * 120.00121 * 359.97438 * 7 5 3 33 33 H 1.09000 * 111.00622 * 271.94172 * 10 8 7 34 34 H 1.09005 * 111.00295 * 35.75373 * 10 8 7 35 35 H 1.08995 * 110.36670 * 81.82612 * 11 10 8 36 36 H 1.09004 * 110.36560 * 204.04340 * 11 10 8 37 37 H 0.96994 * 120.00139 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47245 * 302.19229 * 23 21 12 39 39 H 1.09002 * 109.47101 * 62.19080 * 23 21 12 40 40 H 1.09000 * 109.47155 * 182.18919 * 23 21 12 41 41 H 1.08996 * 109.47122 * 60.00340 * 25 24 3 42 42 H 1.08997 * 109.47062 * 180.02562 * 25 24 3 43 43 H 1.09004 * 109.47152 * 299.99914 * 25 24 3 44 44 H 1.08994 * 109.46908 * 65.78331 * 26 24 3 45 45 H 1.09003 * 109.47253 * 185.78666 * 26 24 3 46 46 H 1.09000 * 109.46697 * 305.78591 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6255 1.9745 0.8564 5 6 3.5444 1.4435 0.0882 6 8 4.2108 1.5486 -0.9197 7 7 4.1492 1.3276 1.2869 8 6 5.6118 1.3291 1.3727 9 1 6.0471 0.8048 0.5220 10 6 6.1551 2.7798 1.4600 11 6 7.4986 2.5647 2.2006 12 7 7.2231 1.4976 3.1798 13 6 7.9163 1.2813 4.3408 14 1 7.6352 0.4687 4.9942 15 6 8.9803 2.1068 4.6779 16 7 9.3231 3.0969 3.8814 17 14 9.9264 1.8114 6.2612 18 1 11.0539 0.8816 5.9981 19 1 10.4571 3.1021 6.7688 20 1 9.0201 1.2158 7.2756 21 6 6.0813 0.7035 2.7030 22 1 5.2740 0.7386 3.4346 23 6 6.5154 -0.7453 2.4721 24 7 1.6217 2.1097 -1.2401 25 6 2.1847 3.4639 -1.3250 26 6 1.9900 1.3118 -2.4173 27 1 -0.3634 0.5919 0.8400 28 1 -0.3632 0.4315 -0.9327 29 1 -0.3633 -1.0234 0.0926 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.6162 1.2439 2.0931 33 1 6.3191 3.1960 0.4661 34 1 5.4851 3.4136 2.0410 35 1 8.2710 2.2467 1.5005 36 1 7.8020 3.4797 2.7094 37 1 10.0663 3.6739 4.1170 38 1 7.3354 -0.7690 1.7544 39 1 6.8455 -1.1804 3.4154 40 1 5.6745 -1.3188 2.0821 41 1 3.2730 3.4066 -1.3089 42 1 1.8590 3.9353 -2.2522 43 1 1.8393 4.0548 -0.4766 44 1 1.4245 0.3800 -2.4159 45 1 1.7621 1.8738 -3.3230 46 1 3.0566 1.0895 -2.3863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691725044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -3.027200 kcal Electronic energy + Delta-G solvation = -23847.568534 eV Core-core repulsion = 20580.177239 eV Total energy + Delta-G solvation = -3267.391295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46008 -38.14214 -36.48196 -34.20746 -33.05617 -31.97075 -30.41225 -28.96548 -27.71612 -27.33617 -24.69241 -24.02063 -23.27806 -21.68175 -20.24767 -20.16836 -19.31774 -17.24810 -16.79413 -16.39558 -15.61208 -15.29700 -14.73504 -14.59740 -14.47024 -14.03903 -13.72089 -13.47896 -13.20755 -12.84005 -12.54637 -12.26155 -12.17958 -11.96763 -11.83954 -11.76141 -11.62600 -11.54465 -11.17771 -11.10736 -10.89538 -10.88535 -10.83863 -10.55377 -10.42912 -10.11968 -10.06658 -9.78860 -9.60240 -8.70957 -8.62858 -8.13286 -6.90621 -5.68261 -3.11288 2.68762 3.33802 3.37833 3.43205 3.44712 3.85806 4.45389 4.65999 4.76892 4.88350 5.11017 5.23125 5.26192 5.38907 5.39417 5.46848 5.51420 5.59157 5.61177 5.63587 5.76215 5.78355 5.83875 5.93636 5.96351 6.06307 6.09244 6.18709 6.23044 6.28240 6.34702 6.51286 6.58352 6.68337 6.81535 6.84169 6.89975 7.08513 7.48551 7.59541 7.69656 7.82211 8.31072 8.37492 9.17669 9.78628 10.42439 11.35119 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.003827 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.725415 B = 7315.248492 C = 7745.806724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.064 3.936 4 H 0.102 0.898 5 C 0.486 3.514 6 O -0.542 6.542 7 N -0.712 5.712 8 C 0.134 3.866 9 H 0.089 0.911 10 C -0.151 4.151 11 C 0.153 3.847 12 N -0.595 5.595 13 C -0.222 4.222 14 H 0.078 0.922 15 C -0.010 4.010 16 N -0.921 5.921 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.156 3.844 22 H 0.036 0.964 23 C -0.155 4.155 24 N -0.514 5.514 25 C 0.009 3.991 26 C -0.002 4.002 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.397 0.603 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.109 0.891 37 H 0.252 0.748 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.595 -3.705 -7.828 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.049 4.049 4 H 0.120 0.880 5 C 0.271 3.729 6 O -0.420 6.420 7 N -0.362 5.362 8 C 0.029 3.971 9 H 0.107 0.893 10 C -0.191 4.191 11 C 0.028 3.972 12 N -0.320 5.320 13 C -0.350 4.350 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.745 3.255 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.047 3.953 22 H 0.053 0.947 23 C -0.214 4.214 24 N -0.237 5.237 25 C -0.139 4.139 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.231 0.769 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.440 -3.478 -8.422 18.797 hybrid contribution 1.259 -0.246 1.181 1.744 sum -15.181 -3.725 -7.241 17.227 Atomic orbital electron populations 1.21652 0.94237 1.01108 1.02815 1.21576 0.97397 0.93310 1.03031 1.21993 0.89628 0.97623 0.95606 0.88010 1.21885 0.91383 0.75994 0.83601 1.90599 1.66690 1.49901 1.34813 1.46302 1.08045 1.73071 1.08796 1.22142 0.78242 0.97884 0.98795 0.89278 1.23372 1.00500 0.94957 1.00255 1.21939 0.89884 0.95413 0.89953 1.44485 1.33667 1.31882 1.21965 1.19026 1.08924 1.11414 0.95623 0.90449 1.24790 0.98794 0.98055 0.98888 1.69793 1.30301 1.19802 1.37005 0.86080 0.79881 0.76992 0.82576 1.21630 1.21653 1.20697 1.20986 0.91603 0.90911 0.91751 0.94691 1.22238 0.99973 0.97651 1.01576 1.62532 1.56897 1.02914 1.01344 1.22555 0.99708 0.89463 1.02191 1.22755 1.02480 0.97766 0.91954 0.92637 0.91642 0.93006 0.90976 0.91070 0.76852 0.92174 0.92106 0.96849 0.87350 0.93677 0.92974 0.92699 0.94379 0.93205 0.91443 0.91843 0.91774 0.92139 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.66 37.16 0.36 -0.76 16 2 C -0.12 -1.07 4.91 -26.73 -0.13 -1.21 16 3 C 0.06 0.70 2.33 -68.87 -0.16 0.54 16 4 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.49 6.91 6.10 -10.99 -0.07 6.84 16 6 O -0.54 -9.47 11.86 5.55 0.07 -9.41 16 7 N -0.71 -10.16 5.20 -52.03 -0.27 -10.43 16 8 C 0.13 2.41 2.76 -66.10 -0.18 2.23 16 9 H 0.09 1.74 7.41 -51.92 -0.38 1.36 16 10 C -0.15 -3.00 6.77 -24.58 -0.17 -3.17 16 11 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 12 N -0.59 -14.71 3.13 -162.57 -0.51 -15.22 16 13 C -0.22 -5.99 9.89 -15.06 -0.15 -6.14 16 14 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 17 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.16 3.08 3.48 -66.95 -0.23 2.85 16 22 H 0.04 0.67 7.69 -51.93 -0.40 0.28 16 23 C -0.15 -2.84 9.14 37.16 0.34 -2.51 16 24 N -0.51 -5.88 4.56 -244.59 -1.12 -6.99 16 25 C 0.01 0.11 9.17 60.06 0.55 0.66 16 26 C 0.00 -0.02 8.57 60.06 0.51 0.49 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.56 7.59 -51.93 -0.39 0.16 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.73 6.23 -51.93 -0.32 0.41 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 4.74 8.31 -40.82 -0.34 4.40 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.11 2.96 5.88 -51.93 -0.31 2.65 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.72 5.85 -51.93 -0.30 0.41 16 42 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.64 6.17 -51.93 -0.32 0.32 16 45 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 46 H 0.07 0.98 5.31 -51.93 -0.28 0.70 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -30.18 351.97 -8.50 -38.67 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.07 Total: 4.14 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 0.56 Total: 3.19 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -1.34 Total: -58.63 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.18 -8.50 -38.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691725044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.646 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds