Wall clock time and date at job start Wed Apr 15 2020 11:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 H 1.09005 * 109.47099 * 56.44228 * 3 2 1 5 5 C 1.50690 * 109.47207 * 176.44199 * 3 2 1 6 6 O 1.21285 * 120.00170 * 96.90367 * 5 3 2 7 7 N 1.34772 * 120.00131 * 276.90615 * 5 3 2 8 8 C 1.46506 * 120.00154 * 180.02562 * 7 5 3 9 9 H 1.09008 * 110.63956 * 323.30965 * 8 7 5 10 10 C 1.55151 * 110.72241 * 86.45092 * 8 7 5 11 11 C 1.54912 * 101.58276 * 153.86608 * 10 8 7 12 12 N 1.47422 * 104.83090 * 322.99074 * 11 10 8 13 13 C 1.36938 * 125.65146 * 204.09022 * 12 11 10 14 14 H 1.07995 * 120.00294 * 180.02562 * 13 12 11 15 15 C 1.38821 * 119.99625 * 0.02840 * 13 12 11 16 16 N 1.31615 * 119.99994 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99901 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47411 * 89.99696 * 17 15 13 19 19 H 1.48501 * 109.47041 * 210.00193 * 17 15 13 20 20 H 1.48498 * 109.47100 * 329.99372 * 17 15 13 21 21 C 1.47026 * 108.70304 * 24.12937 * 12 11 10 22 22 H 1.09003 * 109.87911 * 239.51815 * 21 12 11 23 23 C 1.52997 * 109.88271 * 118.35837 * 21 12 11 24 24 N 1.46902 * 109.46734 * 296.44162 * 3 2 1 25 25 C 1.46900 * 110.99650 * 184.55217 * 24 3 2 26 26 C 1.46898 * 111.00320 * 308.50632 * 24 3 2 27 27 H 1.08994 * 109.47431 * 305.16950 * 1 2 3 28 28 H 1.08997 * 109.46677 * 65.17160 * 1 2 3 29 29 H 1.08992 * 109.46947 * 185.16813 * 1 2 3 30 30 H 1.08995 * 109.47350 * 240.00020 * 2 1 3 31 31 H 1.09001 * 109.47033 * 119.99474 * 2 1 3 32 32 H 0.97001 * 120.00121 * 359.97438 * 7 5 3 33 33 H 1.09000 * 111.00622 * 271.94172 * 10 8 7 34 34 H 1.09005 * 111.00295 * 35.75373 * 10 8 7 35 35 H 1.08995 * 110.36670 * 81.82612 * 11 10 8 36 36 H 1.09004 * 110.36560 * 204.04340 * 11 10 8 37 37 H 0.96994 * 120.00139 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47245 * 302.19229 * 23 21 12 39 39 H 1.09002 * 109.47101 * 62.19080 * 23 21 12 40 40 H 1.09000 * 109.47155 * 182.18919 * 23 21 12 41 41 H 1.08996 * 109.47122 * 60.00340 * 25 24 3 42 42 H 1.08997 * 109.47062 * 180.02562 * 25 24 3 43 43 H 1.09004 * 109.47152 * 299.99914 * 25 24 3 44 44 H 1.08994 * 109.46908 * 65.78331 * 26 24 3 45 45 H 1.09003 * 109.47253 * 185.78666 * 26 24 3 46 46 H 1.09000 * 109.46697 * 305.78591 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6255 1.9745 0.8564 5 6 3.5444 1.4435 0.0882 6 8 4.2108 1.5486 -0.9197 7 7 4.1492 1.3276 1.2869 8 6 5.6118 1.3291 1.3727 9 1 6.0471 0.8048 0.5220 10 6 6.1551 2.7798 1.4600 11 6 7.4986 2.5647 2.2006 12 7 7.2231 1.4976 3.1798 13 6 7.9163 1.2813 4.3408 14 1 7.6352 0.4687 4.9942 15 6 8.9803 2.1068 4.6779 16 7 9.3231 3.0969 3.8814 17 14 9.9264 1.8114 6.2612 18 1 11.0539 0.8816 5.9981 19 1 10.4571 3.1021 6.7688 20 1 9.0201 1.2158 7.2756 21 6 6.0813 0.7035 2.7030 22 1 5.2740 0.7386 3.4346 23 6 6.5154 -0.7453 2.4721 24 7 1.6217 2.1097 -1.2401 25 6 2.1847 3.4639 -1.3250 26 6 1.9900 1.3118 -2.4173 27 1 -0.3634 0.5919 0.8400 28 1 -0.3632 0.4315 -0.9327 29 1 -0.3633 -1.0234 0.0926 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.6162 1.2439 2.0931 33 1 6.3191 3.1960 0.4661 34 1 5.4851 3.4136 2.0410 35 1 8.2710 2.2467 1.5005 36 1 7.8020 3.4797 2.7094 37 1 10.0663 3.6739 4.1170 38 1 7.3354 -0.7690 1.7544 39 1 6.8455 -1.1804 3.4154 40 1 5.6745 -1.3188 2.0821 41 1 3.2730 3.4066 -1.3089 42 1 1.8590 3.9353 -2.2522 43 1 1.8393 4.0548 -0.4766 44 1 1.4245 0.3800 -2.4159 45 1 1.7621 1.8738 -3.3230 46 1 3.0566 1.0895 -2.3863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691725044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:53 Heat of formation + Delta-G solvation = -23.627911 kcal Electronic energy + Delta-G solvation = -23848.461848 eV Core-core repulsion = 20580.177239 eV Total energy + Delta-G solvation = -3268.284609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59711 -39.66625 -37.63963 -35.66362 -34.19271 -33.48979 -32.08894 -30.64814 -28.81015 -28.24207 -26.34197 -25.80751 -24.13298 -22.83392 -21.89200 -21.58068 -20.61346 -18.76058 -18.27657 -17.58442 -16.97108 -16.46052 -16.25835 -15.87736 -15.63649 -15.58125 -15.26616 -14.68564 -14.32068 -14.05282 -13.96163 -13.82592 -13.26748 -13.25997 -13.07836 -12.96381 -12.76418 -12.71754 -12.63342 -12.60904 -12.44055 -12.24031 -12.07105 -11.96100 -11.84495 -11.62707 -11.58960 -11.47922 -11.19802 -10.74825 -10.01086 -9.15345 -8.91619 -7.76026 -5.21241 1.47967 1.49439 1.56939 1.57952 2.13745 2.51817 2.96041 3.34805 3.52887 3.78224 3.82878 3.90056 3.96209 4.10623 4.17861 4.27258 4.46811 4.52640 4.59242 4.61555 4.63901 4.65502 4.70262 4.77799 4.85704 4.91511 4.97362 5.00552 5.02487 5.08541 5.18819 5.21647 5.29329 5.37239 5.48250 5.56162 5.57238 5.63468 5.77799 5.90598 5.98328 6.28580 6.56823 7.09737 7.25143 7.77615 8.41247 9.26063 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.003827 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.725415 B = 7315.248492 C = 7745.806724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C 0.070 3.930 4 H 0.123 0.877 5 C 0.486 3.514 6 O -0.575 6.575 7 N -0.703 5.703 8 C 0.154 3.846 9 H 0.074 0.926 10 C -0.136 4.136 11 C 0.158 3.842 12 N -0.613 5.613 13 C -0.228 4.228 14 H 0.087 0.913 15 C -0.069 4.069 16 N -0.952 5.952 17 Si 0.978 3.022 18 H -0.290 1.290 19 H -0.296 1.296 20 H -0.266 1.266 21 C 0.151 3.849 22 H 0.054 0.946 23 C -0.146 4.146 24 N -0.509 5.509 25 C 0.011 3.989 26 C 0.002 3.998 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.059 0.941 34 H 0.068 0.932 35 H -0.018 1.018 36 H 0.077 0.923 37 H 0.246 0.754 38 H 0.032 0.968 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.020 0.980 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.283 -4.889 -7.112 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C -0.043 4.043 4 H 0.141 0.859 5 C 0.273 3.727 6 O -0.455 6.455 7 N -0.354 5.354 8 C 0.048 3.952 9 H 0.092 0.908 10 C -0.175 4.175 11 C 0.032 3.968 12 N -0.339 5.339 13 C -0.357 4.357 14 H 0.104 0.896 15 C -0.261 4.261 16 N -0.602 5.602 17 Si 0.807 3.193 18 H -0.218 1.218 19 H -0.223 1.223 20 H -0.190 1.190 21 C 0.045 3.955 22 H 0.071 0.929 23 C -0.205 4.205 24 N -0.231 5.231 25 C -0.137 4.137 26 C -0.146 4.146 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.250 0.750 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.000 1.000 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.190 -4.695 -7.700 21.204 hybrid contribution 2.055 0.107 0.892 2.243 sum -17.135 -4.587 -6.808 19.000 Atomic orbital electron populations 1.21606 0.92848 1.01975 1.02795 1.21597 0.98438 0.91844 1.03140 1.22162 0.86840 0.99163 0.96127 0.85935 1.22597 0.92745 0.74653 0.82707 1.90612 1.67777 1.51098 1.36009 1.46123 1.06249 1.73194 1.09854 1.21657 0.80556 0.95755 0.97273 0.90828 1.23150 0.98200 0.96639 0.99546 1.21646 0.91509 0.94111 0.89486 1.44722 1.34731 1.32836 1.21577 1.19415 1.08852 1.11090 0.96323 0.89567 1.25618 1.00171 0.98257 1.02033 1.70045 1.30650 1.20810 1.38671 0.85069 0.78507 0.76369 0.79342 1.21768 1.22293 1.19025 1.21200 0.90459 0.91172 0.92714 0.92860 1.22120 1.00619 0.96895 1.00894 1.62601 1.56189 1.02786 1.01554 1.22550 0.97770 0.90018 1.03406 1.22714 1.00855 0.98622 0.92403 0.91862 0.92293 0.91884 0.91938 0.89984 0.75021 0.92190 0.91318 1.00004 0.90521 0.94470 0.94838 0.93310 0.90946 0.96177 0.90361 0.90633 0.90304 0.91402 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.66 71.98 0.70 -0.98 16 2 C -0.11 -1.75 4.91 30.60 0.15 -1.60 16 3 C 0.07 1.34 2.33 44.17 0.10 1.44 16 4 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 5 C 0.49 12.98 6.10 87.65 0.53 13.51 16 6 O -0.57 -19.88 11.86 -3.05 -0.04 -19.92 16 7 N -0.70 -18.50 5.20 -436.92 -2.27 -20.78 16 8 C 0.15 5.39 2.76 46.18 0.13 5.52 16 9 H 0.07 2.86 7.41 -2.38 -0.02 2.85 16 10 C -0.14 -5.42 6.77 31.99 0.22 -5.20 16 11 C 0.16 7.98 5.89 86.86 0.51 8.49 16 12 N -0.61 -30.54 3.13 -668.26 -2.09 -32.63 16 13 C -0.23 -12.33 9.89 84.04 0.83 -11.49 16 14 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 15 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 16 N -0.95 -56.72 10.09 21.65 0.22 -56.50 16 17 Si 0.98 45.07 29.55 68.60 2.03 47.10 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C 0.15 5.79 3.48 45.34 0.16 5.95 16 22 H 0.05 1.89 7.69 -2.39 -0.02 1.87 16 23 C -0.15 -5.13 9.14 71.98 0.66 -4.48 16 24 N -0.51 -10.54 4.56 -927.74 -4.24 -14.77 16 25 C 0.01 0.24 9.17 127.69 1.17 1.41 16 26 C 0.00 0.04 8.57 127.69 1.09 1.13 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.82 7.59 -2.39 -0.02 0.80 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 1.11 6.23 -2.39 -0.01 1.10 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.41 8.45 8.31 -92.71 -0.77 7.68 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.08 4.38 5.88 -2.39 -0.01 4.37 16 37 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.02 0.56 5.85 -2.39 -0.01 0.55 16 42 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 1.43 6.17 -2.39 -0.01 1.41 16 45 H 0.07 1.32 8.02 -2.39 -0.02 1.30 16 46 H 0.04 1.17 5.31 -2.39 -0.01 1.16 16 Total: -1.00 -66.89 351.97 0.51 -66.38 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.18 Total: 20.77 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.72 Total: 10.35 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -8.38 Total: -124.68 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.04 Total: -19.92 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.89 0.51 -66.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691725044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.753 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds