Wall clock time and date at job start Wed Apr 15 2020 11:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47383 * 2 1 4 4 N 1.46506 * 109.46877 * 120.00048 * 2 1 3 5 5 C 1.34780 * 119.99967 * 155.00169 * 4 2 1 6 6 O 1.21282 * 119.99908 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00022 * 179.97438 * 5 4 2 8 8 N 1.46896 * 109.47199 * 179.97438 * 7 5 4 9 9 C 1.46948 * 111.00183 * 170.00086 * 8 7 5 10 10 C 1.53049 * 109.36764 * 183.19149 * 9 8 7 11 11 N 1.46961 * 109.36177 * 301.59566 * 10 9 8 12 12 C 1.46896 * 111.00124 * 183.18463 * 11 10 9 13 13 C 1.52996 * 109.47256 * 170.00033 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.46956 * 110.87704 * 59.32220 * 11 10 9 23 23 C 1.46963 * 111.00029 * 293.80266 * 8 7 5 24 24 H 1.08998 * 109.47321 * 300.00448 * 1 2 3 25 25 H 1.08998 * 109.47227 * 60.00164 * 1 2 3 26 26 H 1.09004 * 109.47628 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47321 * 239.99552 * 2 1 3 28 28 H 1.09007 * 109.46943 * 299.99929 * 3 2 1 29 29 H 1.08998 * 109.47258 * 59.99513 * 3 2 1 30 30 H 1.09001 * 109.47424 * 179.97438 * 3 2 1 31 31 H 0.97001 * 119.99890 * 334.99313 * 4 2 1 32 32 H 1.09003 * 109.46958 * 59.99456 * 7 5 4 33 33 H 1.08995 * 109.47010 * 299.99682 * 7 5 4 34 34 H 1.08999 * 109.48998 * 63.22220 * 9 8 7 35 35 H 1.09000 * 109.50650 * 303.16557 * 9 8 7 36 36 H 1.09001 * 109.49268 * 181.63226 * 10 9 8 37 37 H 1.09000 * 109.49067 * 61.56179 * 10 9 8 38 38 H 1.09004 * 109.46774 * 50.00232 * 12 11 10 39 39 H 1.09000 * 109.47723 * 290.00621 * 12 11 10 40 40 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 41 41 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.49195 * 60.64478 * 22 11 10 44 44 H 1.09002 * 109.48564 * 180.71036 * 22 11 10 45 45 H 1.09000 * 109.48524 * 296.77653 * 23 8 7 46 46 H 1.09001 * 109.48867 * 56.84120 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 3.2402 -1.2592 1.1945 6 8 3.9354 -1.1995 0.2025 7 6 3.7428 -1.9692 2.4251 8 7 5.0891 -2.4983 2.1698 9 6 5.7068 -2.9873 3.4102 10 6 7.1340 -3.4553 3.1162 11 7 7.0996 -4.5127 2.0961 12 6 8.4460 -5.0418 1.8407 13 6 8.3445 -6.2956 0.9698 14 6 9.7257 -6.8387 0.7083 15 1 10.5895 -6.3398 1.1222 16 6 9.8862 -7.9763 -0.0543 17 7 8.8343 -8.5840 -0.5580 18 14 11.5977 -8.6538 -0.3720 19 1 11.9537 -9.6207 0.6974 20 1 11.6215 -9.3408 -1.6883 21 1 12.5784 -7.5388 -0.3778 22 6 6.4819 -4.0237 0.8556 23 6 5.0547 -3.5556 1.1496 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.4621 -0.7386 1.9895 32 1 3.0702 -2.7911 2.6705 33 1 3.7796 -1.2684 3.2592 34 1 5.1243 -3.8208 3.8025 35 1 5.7322 -2.1832 4.1457 36 1 7.5842 -3.8453 4.0291 37 1 7.7240 -2.6153 2.7495 38 1 8.9226 -5.2948 2.7878 39 1 9.0408 -4.2881 1.3246 40 1 7.8679 -6.0426 0.0227 41 1 7.7498 -7.0493 1.4859 42 1 8.9472 -9.3841 -1.0947 43 1 7.0644 -3.1901 0.4633 44 1 6.4566 -4.8280 0.1204 45 1 4.4647 -4.3956 1.5163 46 1 4.6045 -3.1656 0.2367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049972739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:40 Heat of formation + Delta-G solvation = -32.686210 kcal Electronic energy + Delta-G solvation = -22664.133787 eV Core-core repulsion = 19395.456380 eV Total energy + Delta-G solvation = -3268.677406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17356 -38.63521 -36.28652 -35.19583 -32.94503 -31.95008 -30.66495 -30.03764 -27.85476 -27.57244 -25.04488 -23.41621 -23.17922 -21.58423 -20.59719 -20.25722 -19.35457 -17.21475 -16.62394 -16.35284 -15.68396 -15.48925 -14.66818 -14.60572 -14.54678 -14.51132 -14.23841 -13.76442 -13.52377 -13.27795 -13.17100 -12.68597 -12.61758 -12.42978 -12.13794 -11.96973 -11.68221 -11.61592 -11.30922 -11.20241 -10.93104 -10.90295 -10.71633 -10.53039 -10.42663 -9.83187 -9.67224 -9.29356 -9.27258 -9.05586 -8.28479 -8.25499 -7.62451 -5.94570 -3.96554 2.56128 2.85967 3.35738 3.41618 3.45263 3.99180 4.43777 4.45141 4.62465 4.68318 4.72446 4.89966 5.00449 5.10033 5.20602 5.21919 5.34396 5.39075 5.41207 5.42375 5.54915 5.58105 5.66507 5.75905 5.77129 5.91224 5.93835 6.04224 6.19547 6.25527 6.34045 6.43988 6.53258 6.60259 6.94876 7.04020 7.13691 7.34824 7.59155 7.66293 7.86721 7.96805 8.14426 8.15528 8.49560 9.10726 9.66660 11.16899 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.030569 B = 0.002810 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.745251 B = 9961.975905 C =10462.252976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 C -0.163 4.163 4 N -0.734 5.734 5 C 0.513 3.487 6 O -0.514 6.514 7 C 0.037 3.963 8 N -0.523 5.523 9 C 0.061 3.939 10 C 0.057 3.943 11 N -0.542 5.542 12 C 0.064 3.936 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.061 3.939 23 C 0.056 3.944 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.397 0.603 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.023 0.977 42 H 0.260 0.740 43 H 0.036 0.964 44 H 0.089 0.911 45 H 0.036 0.964 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.220 18.298 6.808 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.222 4.222 4 N -0.388 5.388 5 C 0.299 3.701 6 O -0.388 6.388 7 C -0.095 4.095 8 N -0.249 5.249 9 C -0.067 4.067 10 C -0.072 4.072 11 N -0.267 5.267 12 C -0.063 4.063 13 C -0.009 4.009 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.068 4.068 23 C -0.072 4.072 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.054 0.946 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.734 18.183 5.954 26.088 hybrid contribution 0.606 -0.413 0.247 0.773 sum -17.129 17.770 6.201 25.448 Atomic orbital electron populations 1.22072 0.94243 1.02620 1.02822 1.20901 0.93776 0.93044 0.89074 1.22183 1.02358 0.95781 1.01847 1.46135 1.18099 1.57811 1.16756 1.20660 0.80918 0.78574 0.89955 1.90709 1.55391 1.58015 1.34703 1.21929 0.91961 0.99524 0.96065 1.61883 1.17221 1.36081 1.09684 1.22181 0.95773 0.98114 0.90641 1.22090 0.94991 0.93567 0.96573 1.62295 1.23221 1.32213 1.08949 1.22308 0.85890 0.98085 1.00006 1.19089 0.96807 0.90939 0.94087 1.21208 0.92826 1.10210 1.31695 0.92810 1.24998 0.96673 0.96829 0.95873 1.69978 1.28859 1.19598 1.34859 0.86595 0.84771 0.79101 0.77522 1.20689 1.21253 1.19934 1.22113 0.93272 0.98791 0.92592 1.22373 0.97913 0.91194 0.95709 0.92161 0.90979 0.91961 0.89431 0.91762 0.92648 0.91911 0.76907 0.92014 0.88157 0.93980 0.90845 0.90625 0.94621 0.92195 0.96148 0.96467 0.95835 0.93050 0.94535 0.89267 0.94602 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.38 37.16 0.35 -0.46 16 2 C 0.14 1.06 3.18 -67.93 -0.22 0.84 16 3 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 4 N -0.73 -5.80 5.08 -53.81 -0.27 -6.07 16 5 C 0.51 5.93 7.49 -10.98 -0.08 5.85 16 6 O -0.51 -8.27 14.00 5.56 0.08 -8.20 16 7 C 0.04 0.38 5.45 -4.98 -0.03 0.35 16 8 N -0.52 -7.40 4.44 -235.92 -1.05 -8.45 16 9 C 0.06 0.80 5.61 -3.77 -0.02 0.78 16 10 C 0.06 0.90 5.61 -3.77 -0.02 0.87 16 11 N -0.54 -10.54 4.71 -234.47 -1.10 -11.65 16 12 C 0.06 1.42 4.90 -3.83 -0.02 1.40 16 13 C 0.03 0.76 4.91 -27.88 -0.14 0.62 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 18 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.06 1.16 5.41 -3.77 -0.02 1.14 16 23 C 0.06 0.91 5.26 -3.76 -0.02 0.89 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.40 1.93 8.60 -40.82 -0.35 1.58 16 32 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.77 8.07 -51.93 -0.42 0.36 16 36 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 39 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 40 H 0.02 0.49 6.49 -51.93 -0.34 0.15 16 41 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.87 6.34 -51.93 -0.33 1.54 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.55 5.85 -51.93 -0.30 1.25 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -33.96 362.54 -9.86 -43.83 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -8.42 Total: -2.84 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.27 Total: -2.48 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -1.69 Total: -52.89 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.96 -9.86 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049972739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.143 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds