Wall clock time and date at job start Wed Apr 15 2020 11:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47383 * 2 1 4 4 N 1.46506 * 109.46877 * 120.00048 * 2 1 3 5 5 C 1.34780 * 119.99967 * 155.00169 * 4 2 1 6 6 O 1.21282 * 119.99908 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00022 * 179.97438 * 5 4 2 8 8 N 1.46896 * 109.47199 * 179.97438 * 7 5 4 9 9 C 1.46948 * 111.00183 * 170.00086 * 8 7 5 10 10 C 1.53049 * 109.36764 * 183.19149 * 9 8 7 11 11 N 1.46961 * 109.36177 * 301.59566 * 10 9 8 12 12 C 1.46896 * 111.00124 * 183.18463 * 11 10 9 13 13 C 1.52996 * 109.47256 * 170.00033 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.46956 * 110.87704 * 59.32220 * 11 10 9 23 23 C 1.46963 * 111.00029 * 293.80266 * 8 7 5 24 24 H 1.08998 * 109.47321 * 300.00448 * 1 2 3 25 25 H 1.08998 * 109.47227 * 60.00164 * 1 2 3 26 26 H 1.09004 * 109.47628 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47321 * 239.99552 * 2 1 3 28 28 H 1.09007 * 109.46943 * 299.99929 * 3 2 1 29 29 H 1.08998 * 109.47258 * 59.99513 * 3 2 1 30 30 H 1.09001 * 109.47424 * 179.97438 * 3 2 1 31 31 H 0.97001 * 119.99890 * 334.99313 * 4 2 1 32 32 H 1.09003 * 109.46958 * 59.99456 * 7 5 4 33 33 H 1.08995 * 109.47010 * 299.99682 * 7 5 4 34 34 H 1.08999 * 109.48998 * 63.22220 * 9 8 7 35 35 H 1.09000 * 109.50650 * 303.16557 * 9 8 7 36 36 H 1.09001 * 109.49268 * 181.63226 * 10 9 8 37 37 H 1.09000 * 109.49067 * 61.56179 * 10 9 8 38 38 H 1.09004 * 109.46774 * 50.00232 * 12 11 10 39 39 H 1.09000 * 109.47723 * 290.00621 * 12 11 10 40 40 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 41 41 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.49195 * 60.64478 * 22 11 10 44 44 H 1.09002 * 109.48564 * 180.71036 * 22 11 10 45 45 H 1.09000 * 109.48524 * 296.77653 * 23 8 7 46 46 H 1.09001 * 109.48867 * 56.84120 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 3.2402 -1.2592 1.1945 6 8 3.9354 -1.1995 0.2025 7 6 3.7428 -1.9692 2.4251 8 7 5.0891 -2.4983 2.1698 9 6 5.7068 -2.9873 3.4102 10 6 7.1340 -3.4553 3.1162 11 7 7.0996 -4.5127 2.0961 12 6 8.4460 -5.0418 1.8407 13 6 8.3445 -6.2956 0.9698 14 6 9.7257 -6.8387 0.7083 15 1 10.5895 -6.3398 1.1222 16 6 9.8862 -7.9763 -0.0543 17 7 8.8343 -8.5840 -0.5580 18 14 11.5977 -8.6538 -0.3720 19 1 11.9537 -9.6207 0.6974 20 1 11.6215 -9.3408 -1.6883 21 1 12.5784 -7.5388 -0.3778 22 6 6.4819 -4.0237 0.8556 23 6 5.0547 -3.5556 1.1496 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.4621 -0.7386 1.9895 32 1 3.0702 -2.7911 2.6705 33 1 3.7796 -1.2684 3.2592 34 1 5.1243 -3.8208 3.8025 35 1 5.7322 -2.1832 4.1457 36 1 7.5842 -3.8453 4.0291 37 1 7.7240 -2.6153 2.7495 38 1 8.9226 -5.2948 2.7878 39 1 9.0408 -4.2881 1.3246 40 1 7.8679 -6.0426 0.0227 41 1 7.7498 -7.0493 1.4859 42 1 8.9472 -9.3841 -1.0947 43 1 7.0644 -3.1901 0.4633 44 1 6.4566 -4.8280 0.1204 45 1 4.4647 -4.3956 1.5163 46 1 4.6045 -3.1656 0.2367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049972739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:39 Heat of formation + Delta-G solvation = -58.856911 kcal Electronic energy + Delta-G solvation = -22665.268634 eV Core-core repulsion = 19395.456380 eV Total energy + Delta-G solvation = -3269.812253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12862 -39.87552 -37.24429 -36.49092 -35.00629 -32.81563 -32.05367 -31.67014 -29.22021 -28.08648 -26.67039 -24.98263 -24.60257 -22.35626 -22.04042 -21.41261 -20.73382 -18.62857 -18.06439 -17.41351 -16.78104 -16.60005 -16.53087 -16.03732 -15.62730 -15.59739 -15.27039 -15.26241 -14.81838 -14.47162 -14.21643 -14.01916 -13.83405 -13.27172 -13.18307 -13.05482 -12.98734 -12.92767 -12.73793 -12.47429 -12.31920 -12.23024 -12.10368 -11.94608 -11.87115 -11.77136 -11.28090 -11.18948 -10.70553 -10.54680 -10.06400 -9.36528 -9.18914 -8.20693 -6.32340 1.39172 1.41471 1.52464 1.69969 2.11780 2.39776 2.96492 3.06169 3.12458 3.79364 3.91536 4.01395 4.10956 4.14053 4.20044 4.25139 4.33895 4.36682 4.45466 4.50523 4.55750 4.62269 4.71285 4.74762 4.76937 4.85703 4.91603 4.93926 4.99155 5.04448 5.06265 5.10535 5.26898 5.33571 5.43663 5.61481 5.63832 5.75037 5.90834 5.97454 6.12038 6.29674 6.31330 6.66526 6.84440 7.36580 7.37505 8.91676 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.030569 B = 0.002810 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.745251 B = 9961.975905 C =10462.252976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.132 3.868 3 C -0.158 4.158 4 N -0.716 5.716 5 C 0.508 3.492 6 O -0.570 6.570 7 C 0.039 3.961 8 N -0.540 5.540 9 C 0.067 3.933 10 C 0.052 3.948 11 N -0.548 5.548 12 C 0.080 3.920 13 C 0.038 3.962 14 C -0.545 4.545 15 H 0.060 0.940 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.264 1.264 22 C 0.065 3.935 23 C 0.072 3.928 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.416 0.584 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.014 0.986 40 H -0.011 1.011 41 H -0.006 1.006 42 H 0.264 0.736 43 H 0.020 0.980 44 H 0.057 0.943 45 H 0.036 0.964 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.003 19.523 8.983 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.370 5.370 5 C 0.295 3.705 6 O -0.448 6.448 7 C -0.091 4.091 8 N -0.266 5.266 9 C -0.060 4.060 10 C -0.076 4.076 11 N -0.273 5.273 12 C -0.048 4.048 13 C 0.000 4.000 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.793 3.207 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.063 4.063 23 C -0.056 4.056 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.253 0.747 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.008 0.992 41 H 0.012 0.988 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.573 19.439 8.180 28.102 hybrid contribution 0.766 -0.742 -0.431 1.150 sum -17.807 18.697 7.749 26.957 Atomic orbital electron populations 1.22009 0.91573 1.03055 1.04191 1.20962 0.95739 0.92680 0.87882 1.22130 1.00267 0.95922 1.03296 1.46006 1.17106 1.56343 1.17533 1.21022 0.81411 0.78383 0.89701 1.90698 1.57163 1.60293 1.36667 1.22062 0.90140 1.00624 0.96323 1.61786 1.20067 1.34985 1.09730 1.22210 0.93517 0.99600 0.90701 1.22273 0.97503 0.92163 0.95638 1.62241 1.21237 1.34235 1.09626 1.21967 0.87689 0.95883 0.99235 1.18903 0.95465 0.92267 0.93348 1.21628 0.93736 1.10850 1.32156 0.92149 1.26005 1.01405 0.97081 0.95335 1.70122 1.31543 1.20124 1.35426 0.85391 0.79053 0.78579 0.77664 1.19446 1.20700 1.18824 1.21984 0.95270 0.96980 0.92084 1.22060 0.95215 0.91875 0.96478 0.90226 0.90179 0.91989 0.92494 0.90663 0.90874 0.95018 0.74696 0.89825 0.84557 0.93450 0.87031 0.88980 0.95268 0.91166 0.96800 0.99244 0.98803 0.92735 0.96129 0.92471 0.94616 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.38 71.98 0.68 -0.50 16 2 C 0.13 1.94 3.18 44.99 0.14 2.08 16 3 C -0.16 -2.25 9.48 71.98 0.68 -1.57 16 4 N -0.72 -10.06 5.08 -442.53 -2.25 -12.31 16 5 C 0.51 11.26 7.49 87.66 0.66 11.92 16 6 O -0.57 -18.93 14.00 -3.04 -0.04 -18.97 16 7 C 0.04 0.69 5.45 85.56 0.47 1.16 16 8 N -0.54 -14.46 4.44 -900.31 -4.00 -18.46 16 9 C 0.07 1.57 5.61 86.31 0.48 2.05 16 10 C 0.05 1.58 5.61 86.31 0.48 2.06 16 11 N -0.55 -21.72 4.71 -895.72 -4.22 -25.94 16 12 C 0.08 3.64 4.90 86.30 0.42 4.07 16 13 C 0.04 2.13 4.91 29.85 0.15 2.27 16 14 C -0.55 -32.47 9.11 25.60 0.23 -32.24 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 17 N -0.93 -58.80 13.29 21.45 0.28 -58.52 16 18 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.07 2.64 5.41 86.31 0.47 3.11 16 23 C 0.07 2.39 5.26 86.31 0.45 2.84 16 24 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.06 1.20 7.58 -2.39 -0.02 1.19 16 28 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.42 2.72 8.60 -92.71 -0.80 1.92 16 32 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 33 H 0.14 1.48 8.03 -2.39 -0.02 1.46 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.82 8.07 -2.39 -0.02 1.80 16 36 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 3.04 8.03 -2.38 -0.02 3.02 16 39 H 0.01 0.64 8.12 -2.39 -0.02 0.62 16 40 H -0.01 -0.66 6.49 -2.38 -0.02 -0.67 16 41 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 2.62 6.34 -2.39 -0.02 2.60 16 45 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.08 2.87 5.85 -2.39 -0.01 2.85 16 Total: -1.00 -77.65 362.54 -2.28 -79.93 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.14 Total: 8.89 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.78 Total: -2.32 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -10.18 Total: -115.22 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.04 Total: -18.97 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.65 -2.28 -79.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049972739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.077 kcal (2) G-P(sol) polarization free energy of solvation -77.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds