Wall clock time and date at job start Wed Apr 15 2020 11:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47497 * 2 1 4 4 N 1.46900 * 109.47145 * 120.00536 * 2 1 3 5 5 C 1.46894 * 111.00559 * 84.99825 * 4 2 1 6 6 C 1.52997 * 109.47515 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 H 1.08006 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00045 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 120.00290 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46960 * 89.99695 * 18 16 14 20 20 H 1.48498 * 109.47151 * 209.99981 * 18 16 14 21 21 H 1.48499 * 109.46789 * 329.99889 * 18 16 14 22 22 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 23 23 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 24 24 H 1.09002 * 109.47075 * 59.99978 * 1 2 3 25 25 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46626 * 300.00018 * 1 2 3 27 27 H 1.09007 * 109.46809 * 240.00096 * 2 1 3 28 28 H 1.08998 * 109.47315 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47019 * 300.00611 * 3 2 1 30 30 H 1.09004 * 109.46711 * 59.99815 * 3 2 1 31 31 H 1.00899 * 110.99900 * 321.03876 * 4 2 1 32 32 H 1.09002 * 109.47104 * 59.99767 * 5 4 2 33 33 H 1.08998 * 109.46828 * 300.00600 * 5 4 2 34 34 H 1.09002 * 109.47153 * 59.99762 * 6 5 4 35 35 H 1.09001 * 109.46832 * 299.99953 * 6 5 4 36 36 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 37 37 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 38 38 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 39 39 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 40 40 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 41 41 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 42 42 H 0.96998 * 119.99927 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.49120 * 303.14081 * 22 12 11 44 44 H 1.09003 * 109.48945 * 183.06528 * 22 12 11 45 45 H 1.09003 * 109.63301 * 350.89825 * 23 9 7 46 46 H 1.09003 * 109.62726 * 111.48107 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 -2.1438 0.9806 6 6 2.5950 -2.8291 2.2489 7 6 2.6588 -4.3180 2.0246 8 8 2.3274 -4.7849 0.9554 9 7 3.0852 -5.1305 3.0118 10 6 3.4984 -4.5844 4.3134 11 6 2.7488 -5.3483 5.4165 12 7 2.9762 -6.7898 5.2478 13 6 2.4238 -7.5458 6.3797 14 6 3.1843 -7.1998 7.6340 15 1 3.9964 -6.4889 7.5943 16 6 2.8426 -7.7899 8.8322 17 7 3.5059 -7.4875 9.9269 18 14 1.4374 -9.0189 8.9011 19 1 1.9640 -10.3867 8.6624 20 1 0.7952 -8.9620 10.2389 21 1 0.4360 -8.6847 7.8567 22 6 2.4246 -7.2708 3.9741 23 6 3.1556 -6.5861 2.8138 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.4496 -0.4722 2.0022 32 1 2.7588 -2.3576 0.1530 33 1 1.0871 -2.5187 0.7424 34 1 1.9183 -2.6153 3.0762 35 1 3.5904 -2.4542 2.4874 36 1 4.5732 -4.7135 4.4400 37 1 3.2456 -3.5253 4.3630 38 1 1.6815 -5.1380 5.3476 39 1 3.1197 -5.0332 6.3918 40 1 1.3726 -7.2891 6.5098 41 1 2.5152 -8.6139 6.1825 42 1 3.2657 -7.9029 10.7699 43 1 1.3618 -7.0337 3.9254 44 1 2.5606 -8.3500 3.9034 45 1 2.6761 -6.8512 1.8715 46 1 4.1983 -6.9036 2.7993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134824541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:46 Heat of formation + Delta-G solvation = -33.564655 kcal Electronic energy + Delta-G solvation = -22626.133260 eV Core-core repulsion = 19357.417761 eV Total energy + Delta-G solvation = -3268.715499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09648 -37.98261 -37.35233 -34.50271 -33.24021 -32.40681 -30.96774 -29.24328 -28.40325 -27.44069 -25.71197 -23.66031 -22.89612 -21.56270 -21.17013 -20.38525 -18.59767 -17.22875 -16.85812 -16.09305 -15.87739 -15.50338 -15.13080 -14.68360 -14.55080 -14.42353 -14.11338 -13.70893 -13.62714 -13.50736 -13.27257 -12.65409 -12.55034 -12.44701 -12.34048 -12.11448 -11.76350 -11.59938 -11.46899 -11.39602 -11.20234 -11.14545 -11.03578 -10.81601 -10.61358 -10.36529 -9.94891 -9.69014 -9.37911 -8.69773 -8.63705 -8.52596 -7.50338 -6.12166 -4.10322 2.68037 3.02527 3.23745 3.31600 3.33126 3.88683 4.35871 4.56229 4.59214 4.64165 4.77060 4.84944 4.94094 5.03752 5.19085 5.20670 5.29265 5.30869 5.39224 5.45750 5.47587 5.50052 5.55110 5.58012 5.68032 5.75734 5.77061 5.81816 5.84430 5.95730 5.99562 6.14039 6.33155 6.39376 6.58069 6.74838 6.76943 6.88416 7.10610 7.48166 7.50143 7.78203 7.91438 8.22143 8.56310 8.94752 9.49301 11.00599 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.027573 B = 0.002955 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.233463 B = 9472.692909 C = 9857.527912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 C -0.139 4.139 4 N -0.687 5.687 5 C 0.075 3.925 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.555 6.555 9 N -0.609 5.609 10 C 0.109 3.891 11 C 0.049 3.951 12 N -0.527 5.527 13 C 0.162 3.838 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.038 3.962 23 C 0.118 3.882 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.340 0.660 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.025 0.975 39 H 0.103 0.897 40 H -0.011 1.011 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.026 0.974 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 13.291 -17.143 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.032 4.032 3 C -0.197 4.197 4 N -0.318 5.318 5 C -0.054 4.054 6 C -0.179 4.179 7 C 0.304 3.696 8 O -0.434 6.434 9 N -0.342 5.342 10 C -0.014 4.014 11 C -0.080 4.080 12 N -0.251 5.251 13 C 0.036 3.964 14 C -0.550 4.550 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.091 4.091 23 C -0.005 4.005 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.121 0.879 40 H 0.006 0.994 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.906 13.018 -17.663 22.134 hybrid contribution -2.584 -0.916 0.465 2.780 sum -5.490 12.102 -17.198 21.734 Atomic orbital electron populations 1.22522 0.97319 1.02031 1.02421 1.21549 0.92578 0.95587 0.93479 1.21765 1.01802 0.94814 1.01335 1.60605 1.57460 1.07797 1.05942 1.21669 1.00372 0.86317 0.97052 1.21613 1.04583 0.91726 0.99933 1.20560 0.76587 0.88948 0.83548 1.90663 1.49740 1.77470 1.25503 1.48259 1.64471 1.07545 1.13911 1.22130 1.00377 0.97444 0.81468 1.22457 0.97215 0.89044 0.99261 1.61891 1.58696 1.02893 1.01659 1.20178 0.93392 0.93433 0.89357 1.21000 1.17622 1.26525 0.89868 0.90026 1.24893 0.96275 0.96470 0.95601 1.69889 1.40789 1.43692 0.99336 0.86873 0.83151 0.82268 0.77525 1.20088 1.21162 1.19358 1.22464 0.96049 0.99812 0.90763 1.21728 1.01399 0.78709 0.98620 0.92038 0.92653 0.92377 0.90461 0.91960 0.92608 0.92704 0.84196 0.90273 0.94423 0.89031 0.87937 0.90276 0.89843 0.95676 0.87857 0.99379 0.95613 0.92581 0.95543 0.90058 0.89384 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.16 37.16 0.34 -0.97 16 2 C 0.08 0.61 3.20 -67.71 -0.22 0.39 16 3 C -0.14 -0.95 9.52 37.16 0.35 -0.60 16 4 N -0.69 -5.96 6.25 -106.73 -0.67 -6.63 16 5 C 0.08 0.77 4.77 -3.83 -0.02 0.76 16 6 C -0.14 -1.43 4.32 -27.88 -0.12 -1.55 16 7 C 0.52 7.25 7.71 -10.98 -0.08 7.17 16 8 O -0.55 -9.48 15.43 5.56 0.09 -9.40 16 9 N -0.61 -8.74 3.00 -172.16 -0.52 -9.26 16 10 C 0.11 1.47 6.53 -3.37 -0.02 1.45 16 11 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 12 N -0.53 -10.41 4.62 -235.44 -1.09 -11.50 16 13 C 0.16 3.79 3.79 -4.98 -0.02 3.77 16 14 C -0.51 -13.92 8.96 -34.44 -0.31 -14.23 16 15 H 0.08 2.39 7.37 -52.48 -0.39 2.00 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 18 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C 0.04 0.64 5.62 -3.68 -0.02 0.62 16 23 C 0.12 1.76 6.60 -3.58 -0.02 1.74 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.44 7.45 -51.93 -0.39 0.06 16 26 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 27 H 0.08 0.65 7.80 -51.92 -0.40 0.25 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.34 2.63 8.47 -39.29 -0.33 2.30 16 32 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 33 H 0.04 0.43 7.39 -51.93 -0.38 0.04 16 34 H 0.09 0.84 7.67 -51.93 -0.40 0.44 16 35 H 0.10 0.96 7.99 -51.93 -0.41 0.55 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.88 6.02 -51.93 -0.31 0.57 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 1.98 6.67 -51.93 -0.35 1.63 16 40 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 41 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 45 H 0.09 1.31 7.06 -51.93 -0.37 0.94 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -31.03 358.67 -9.23 -40.25 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.29 Total: -0.48 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -0.26 Total: 1.25 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -1.50 Total: -53.36 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.03 -9.23 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134824541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.689 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds