Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47345 * 2 1 4 4 N 1.46896 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.46894 * 111.00240 * 66.04712 * 4 3 2 6 6 C 1.46907 * 110.99638 * 189.99513 * 4 3 2 7 7 C 1.53005 * 109.46832 * 75.87726 * 6 4 3 8 8 H 1.09006 * 110.64118 * 300.75882 * 7 6 4 9 9 C 1.54588 * 110.72806 * 63.90821 * 7 6 4 10 10 C 1.53998 * 105.14129 * 140.31507 * 9 7 6 11 11 N 1.47897 * 107.05602 * 1.22758 * 10 9 7 12 12 C 1.46900 * 111.00212 * 214.15340 * 11 10 9 13 13 C 1.50698 * 109.47378 * 175.75208 * 12 11 10 14 14 O 1.21292 * 119.99831 * 6.31917 * 13 12 11 15 15 N 1.34776 * 120.00192 * 186.32269 * 13 12 11 16 16 C 1.37097 * 120.00228 * 180.02562 * 15 13 12 17 17 H 1.08006 * 119.99802 * 359.97438 * 16 15 13 18 18 C 1.38955 * 120.00091 * 179.72265 * 16 15 13 19 19 N 1.31410 * 119.99775 * 0.27146 * 18 16 15 20 20 Si 1.86803 * 120.00047 * 180.27361 * 18 16 15 21 21 H 1.48505 * 109.46774 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46942 * 119.99566 * 20 18 16 23 23 H 1.48497 * 109.46787 * 240.00134 * 20 18 16 24 24 C 1.48539 * 105.82353 * 334.66900 * 11 10 9 25 25 H 1.08999 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46773 * 299.99782 * 1 2 3 27 27 H 1.08999 * 109.47562 * 59.99994 * 1 2 3 28 28 H 1.08998 * 109.47078 * 239.99766 * 2 1 3 29 29 H 1.08999 * 109.47562 * 120.00005 * 2 1 3 30 30 H 1.08998 * 109.47223 * 59.99855 * 3 2 1 31 31 H 1.09001 * 109.46446 * 300.00077 * 3 2 1 32 32 H 1.09004 * 109.47224 * 185.71117 * 5 4 3 33 33 H 1.09005 * 109.47193 * 305.70469 * 5 4 3 34 34 H 1.08993 * 109.47923 * 65.70749 * 5 4 3 35 35 H 1.09000 * 109.47500 * 315.87656 * 6 4 3 36 36 H 1.08997 * 109.47311 * 195.87255 * 6 4 3 37 37 H 1.09005 * 110.30815 * 21.40082 * 9 7 6 38 38 H 1.08998 * 110.31160 * 259.23573 * 9 7 6 39 39 H 1.08994 * 109.91628 * 241.87531 * 10 9 7 40 40 H 1.08999 * 109.91633 * 120.57824 * 10 9 7 41 41 H 1.09008 * 109.46728 * 55.75291 * 12 11 10 42 42 H 1.08994 * 109.47184 * 295.75827 * 12 11 10 43 43 H 0.97003 * 119.99778 * 359.97438 * 15 13 12 44 44 H 0.97005 * 119.99591 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.66655 * 157.64184 * 24 11 10 46 46 H 1.08998 * 110.66640 * 280.77664 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0349 0.8858 -1.2542 6 6 4.0356 2.7930 0.2374 7 6 3.8903 3.1431 1.7198 8 1 2.8443 3.1016 2.0237 9 6 4.7510 2.2002 2.5915 10 6 5.3485 3.1005 3.6887 11 7 4.8259 4.4654 3.4622 12 6 5.8252 5.4788 3.8260 13 6 5.2984 6.8489 3.4850 14 8 4.1572 6.9802 3.0954 15 7 6.0951 7.9284 3.6128 16 6 5.6157 9.1749 3.3030 17 1 4.5995 9.2918 2.9562 18 6 6.4354 10.2885 3.4403 19 7 7.6719 10.1462 3.8620 20 14 5.7797 11.9878 3.0256 21 1 4.3687 11.8776 2.5759 22 1 5.8496 12.8529 4.2305 23 1 6.5996 12.5833 1.9401 24 6 4.4964 4.5380 2.0157 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 5.1198 0.8033 -1.1882 33 1 3.6051 -0.1018 -1.4218 34 1 3.7702 1.5426 -2.0827 35 1 3.4769 3.5118 -0.3621 36 1 5.0885 2.8271 -0.0424 37 1 5.5459 1.7534 1.9943 38 1 4.1290 1.4235 3.0365 39 1 6.4360 3.1024 3.6160 40 1 5.0400 2.7431 4.6712 41 1 6.7464 5.2957 3.2727 42 1 6.0267 5.4229 4.8957 43 1 7.0077 7.8234 3.9246 44 1 8.2440 10.9236 3.9582 45 1 3.7646 5.3234 1.8268 46 1 5.3971 4.6994 1.4235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174966078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -35.045661 kcal Electronic energy + Delta-G solvation = -22701.127859 eV Core-core repulsion = 19432.348139 eV Total energy + Delta-G solvation = -3268.779720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.39226 -38.15990 -37.06108 -33.97332 -33.59350 -31.95273 -31.14385 -29.25929 -27.29917 -26.97630 -25.65720 -24.04917 -22.64625 -21.06988 -20.84318 -19.64750 -19.12009 -17.82393 -16.33856 -15.90929 -15.61068 -15.45306 -14.99786 -14.80678 -14.45920 -14.15112 -14.03814 -13.61153 -13.41890 -13.18927 -12.82170 -12.56248 -12.45590 -12.13453 -11.96375 -11.83447 -11.76016 -11.47185 -11.37232 -11.18404 -11.13704 -10.90746 -10.79116 -10.65302 -10.45399 -10.32910 -10.22505 -10.20589 -9.46909 -8.44873 -8.35136 -7.97012 -7.85374 -6.40057 -3.80590 3.17222 3.27551 3.34867 3.72541 3.93766 4.12773 4.34810 4.69567 4.80347 4.85954 4.90439 4.98217 5.13871 5.17496 5.20445 5.26200 5.30420 5.37184 5.42672 5.47933 5.53488 5.62951 5.64984 5.72616 5.78859 5.82495 5.83048 5.91700 5.96611 5.99135 6.04494 6.07268 6.15673 6.28578 6.33615 6.49725 6.65703 6.93878 6.94921 7.32322 7.38769 7.57015 8.08795 8.64239 9.20222 9.56905 10.08952 10.77911 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.026166 B = 0.003002 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.824706 B = 9323.581416 C = 9720.784175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.051 3.949 4 N -0.540 5.540 5 C 0.022 3.978 6 C 0.063 3.937 7 C -0.086 4.086 8 H 0.080 0.920 9 C -0.107 4.107 10 C 0.029 3.971 11 N -0.494 5.494 12 C 0.037 3.963 13 C 0.444 3.556 14 O -0.579 6.579 15 N -0.565 5.565 16 C -0.297 4.297 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.046 3.954 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.105 0.895 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -19.371 -6.840 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.076 4.076 4 N -0.264 5.264 5 C -0.126 4.126 6 C -0.065 4.065 7 C -0.105 4.105 8 H 0.098 0.902 9 C -0.145 4.145 10 C -0.099 4.099 11 N -0.218 5.218 12 C -0.095 4.095 13 C 0.229 3.771 14 O -0.463 6.463 15 N -0.202 5.202 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.082 4.082 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.123 0.877 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.149 -19.318 -6.359 21.247 hybrid contribution 0.976 1.266 -1.069 1.923 sum -5.173 -18.052 -7.428 20.195 Atomic orbital electron populations 1.21744 0.95735 1.01609 1.01916 1.21536 0.95302 0.96528 1.02428 1.22228 0.87277 0.97056 1.01087 1.61975 1.07624 1.22541 1.34231 1.22427 1.00605 0.99652 0.89955 1.22134 0.99864 0.88201 0.96258 1.22075 1.00407 0.94710 0.93338 0.90191 1.22231 0.98906 0.97340 0.95991 1.22982 0.97407 0.89768 0.99726 1.64512 1.37699 1.01069 1.18520 1.22079 0.93251 0.92373 1.01757 1.19749 0.87091 0.85345 0.84886 1.90480 1.18763 1.85889 1.51127 1.41882 1.13921 1.05844 1.58565 1.19746 0.99511 0.82267 1.41127 0.87888 1.25263 0.95309 1.00103 0.97367 1.69625 1.06470 1.31457 1.46846 0.85808 0.79075 0.81523 0.77993 1.19223 1.20747 1.20810 1.23327 1.00142 0.97051 0.87716 0.92676 0.92486 0.92949 0.92233 0.91170 0.90355 0.95080 0.91537 0.91306 0.95880 0.94328 0.90971 0.91720 0.91373 0.94261 0.90764 0.93596 0.89257 0.77503 0.91962 0.87737 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.98 5.87 -26.73 -0.16 -1.14 16 3 C 0.05 0.50 4.78 -3.83 -0.02 0.48 16 4 N -0.54 -5.62 4.44 -242.92 -1.08 -6.70 16 5 C 0.02 0.19 9.33 60.06 0.56 0.75 16 6 C 0.06 0.75 4.33 -3.82 -0.02 0.73 16 7 C -0.09 -1.15 3.09 -88.76 -0.27 -1.43 16 8 H 0.08 1.13 6.85 -51.93 -0.36 0.77 16 9 C -0.11 -1.31 6.27 -25.38 -0.16 -1.47 16 10 C 0.03 0.41 6.70 -2.75 -0.02 0.39 16 11 N -0.49 -8.73 5.12 -231.89 -1.19 -9.92 16 12 C 0.04 0.70 5.33 -4.98 -0.03 0.67 16 13 C 0.44 10.70 7.41 -10.99 -0.08 10.62 16 14 O -0.58 -15.74 13.81 5.55 0.08 -15.66 16 15 N -0.57 -14.56 5.29 -10.96 -0.06 -14.62 16 16 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 17 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 20 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.05 0.78 5.00 -1.89 -0.01 0.77 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.46 6.44 -51.93 -0.33 0.13 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.83 6.67 -51.93 -0.35 0.48 16 31 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.07 0.53 6.23 -51.93 -0.32 0.21 16 34 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 0.47 8.00 -51.93 -0.42 0.06 16 36 H 0.07 0.84 7.89 -51.93 -0.41 0.43 16 37 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.51 7.67 -51.93 -0.40 0.12 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.79 7.97 -51.92 -0.41 0.38 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.10 2.13 6.39 -51.93 -0.33 1.80 16 46 H 0.03 0.60 7.92 -51.93 -0.41 0.19 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -30.41 360.38 -9.39 -39.80 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.20 Total: 7.96 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.07 Total: 1.60 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -1.60 Total: -55.32 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.66 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.41 -9.39 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174966078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.755 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds