Wall clock time and date at job start Wed Apr 15 2020 11:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47345 * 2 1 4 4 N 1.46896 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.46894 * 111.00240 * 66.04712 * 4 3 2 6 6 C 1.46907 * 110.99638 * 189.99513 * 4 3 2 7 7 C 1.53005 * 109.46832 * 75.87726 * 6 4 3 8 8 H 1.09006 * 110.64118 * 300.75882 * 7 6 4 9 9 C 1.54588 * 110.72806 * 63.90821 * 7 6 4 10 10 C 1.53998 * 105.14129 * 140.31507 * 9 7 6 11 11 N 1.47897 * 107.05602 * 1.22758 * 10 9 7 12 12 C 1.46900 * 111.00212 * 214.15340 * 11 10 9 13 13 C 1.50698 * 109.47378 * 175.75208 * 12 11 10 14 14 O 1.21292 * 119.99831 * 6.31917 * 13 12 11 15 15 N 1.34776 * 120.00192 * 186.32269 * 13 12 11 16 16 C 1.37097 * 120.00228 * 180.02562 * 15 13 12 17 17 H 1.08006 * 119.99802 * 359.97438 * 16 15 13 18 18 C 1.38955 * 120.00091 * 179.72265 * 16 15 13 19 19 N 1.31410 * 119.99775 * 0.27146 * 18 16 15 20 20 Si 1.86803 * 120.00047 * 180.27361 * 18 16 15 21 21 H 1.48505 * 109.46774 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46942 * 119.99566 * 20 18 16 23 23 H 1.48497 * 109.46787 * 240.00134 * 20 18 16 24 24 C 1.48539 * 105.82353 * 334.66900 * 11 10 9 25 25 H 1.08999 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46773 * 299.99782 * 1 2 3 27 27 H 1.08999 * 109.47562 * 59.99994 * 1 2 3 28 28 H 1.08998 * 109.47078 * 239.99766 * 2 1 3 29 29 H 1.08999 * 109.47562 * 120.00005 * 2 1 3 30 30 H 1.08998 * 109.47223 * 59.99855 * 3 2 1 31 31 H 1.09001 * 109.46446 * 300.00077 * 3 2 1 32 32 H 1.09004 * 109.47224 * 185.71117 * 5 4 3 33 33 H 1.09005 * 109.47193 * 305.70469 * 5 4 3 34 34 H 1.08993 * 109.47923 * 65.70749 * 5 4 3 35 35 H 1.09000 * 109.47500 * 315.87656 * 6 4 3 36 36 H 1.08997 * 109.47311 * 195.87255 * 6 4 3 37 37 H 1.09005 * 110.30815 * 21.40082 * 9 7 6 38 38 H 1.08998 * 110.31160 * 259.23573 * 9 7 6 39 39 H 1.08994 * 109.91628 * 241.87531 * 10 9 7 40 40 H 1.08999 * 109.91633 * 120.57824 * 10 9 7 41 41 H 1.09008 * 109.46728 * 55.75291 * 12 11 10 42 42 H 1.08994 * 109.47184 * 295.75827 * 12 11 10 43 43 H 0.97003 * 119.99778 * 359.97438 * 15 13 12 44 44 H 0.97005 * 119.99591 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.66655 * 157.64184 * 24 11 10 46 46 H 1.08998 * 110.66640 * 280.77664 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0349 0.8858 -1.2542 6 6 4.0356 2.7930 0.2374 7 6 3.8903 3.1431 1.7198 8 1 2.8443 3.1016 2.0237 9 6 4.7510 2.2002 2.5915 10 6 5.3485 3.1005 3.6887 11 7 4.8259 4.4654 3.4622 12 6 5.8252 5.4788 3.8260 13 6 5.2984 6.8489 3.4850 14 8 4.1572 6.9802 3.0954 15 7 6.0951 7.9284 3.6128 16 6 5.6157 9.1749 3.3030 17 1 4.5995 9.2918 2.9562 18 6 6.4354 10.2885 3.4403 19 7 7.6719 10.1462 3.8620 20 14 5.7797 11.9878 3.0256 21 1 4.3687 11.8776 2.5759 22 1 5.8496 12.8529 4.2305 23 1 6.5996 12.5833 1.9401 24 6 4.4964 4.5380 2.0157 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 5.1198 0.8033 -1.1882 33 1 3.6051 -0.1018 -1.4218 34 1 3.7702 1.5426 -2.0827 35 1 3.4769 3.5118 -0.3621 36 1 5.0885 2.8271 -0.0424 37 1 5.5459 1.7534 1.9943 38 1 4.1290 1.4235 3.0365 39 1 6.4360 3.1024 3.6160 40 1 5.0400 2.7431 4.6712 41 1 6.7464 5.2957 3.2727 42 1 6.0267 5.4229 4.8957 43 1 7.0077 7.8234 3.9246 44 1 8.2440 10.9236 3.9582 45 1 3.7646 5.3234 1.8268 46 1 5.3971 4.6994 1.4235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174966078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:53 Heat of formation + Delta-G solvation = -56.607976 kcal Electronic energy + Delta-G solvation = -22702.062871 eV Core-core repulsion = 19432.348139 eV Total energy + Delta-G solvation = -3269.714732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78713 -39.58817 -38.27926 -35.96333 -34.51462 -33.37287 -32.90941 -30.39697 -28.61851 -27.85504 -27.00886 -25.69816 -23.50387 -22.17026 -21.84585 -20.99614 -20.67729 -19.86965 -17.88358 -16.97953 -16.79301 -16.65927 -16.32342 -16.24737 -15.89491 -15.58961 -15.33508 -14.80119 -14.75995 -14.23911 -13.98968 -13.82891 -13.59805 -13.38055 -13.17818 -13.07615 -12.89909 -12.77830 -12.66483 -12.41612 -12.30076 -12.20220 -12.11781 -11.99694 -11.75507 -11.59599 -11.50484 -11.43363 -11.22057 -10.25676 -10.01627 -9.30861 -9.26490 -8.47773 -5.96350 1.35415 1.40525 1.54930 2.03414 2.27893 2.80604 2.95447 3.19071 3.36969 3.82439 3.85257 3.93779 4.05966 4.16185 4.25950 4.31611 4.36817 4.43538 4.49516 4.51375 4.53788 4.58554 4.62669 4.69646 4.73572 4.83429 4.85459 4.87897 4.94233 5.05739 5.10061 5.18493 5.22125 5.31745 5.33029 5.39959 5.42629 5.44383 5.88073 5.99884 6.09529 6.13422 6.17012 6.59729 7.11948 7.54797 8.10801 8.70077 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.026166 B = 0.003002 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.824706 B = 9323.581416 C = 9720.784175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.051 3.949 4 N -0.542 5.542 5 C 0.021 3.979 6 C 0.070 3.930 7 C -0.075 4.075 8 H 0.070 0.930 9 C -0.095 4.095 10 C 0.030 3.970 11 N -0.516 5.516 12 C 0.049 3.951 13 C 0.440 3.560 14 O -0.615 6.615 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.270 1.270 24 C 0.048 3.952 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.021 0.979 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.062 0.938 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 -20.840 -7.006 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.077 4.077 4 N -0.265 5.265 5 C -0.127 4.127 6 C -0.058 4.058 7 C -0.094 4.094 8 H 0.088 0.912 9 C -0.133 4.133 10 C -0.098 4.098 11 N -0.241 5.241 12 C -0.083 4.083 13 C 0.228 3.772 14 O -0.501 6.501 15 N -0.212 5.212 16 C -0.460 4.460 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.817 3.183 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.080 4.080 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.473 -20.814 -6.517 22.487 hybrid contribution 0.746 1.689 -1.016 2.108 sum -4.726 -19.125 -7.534 21.092 Atomic orbital electron populations 1.21737 0.95128 1.02287 1.01733 1.21483 0.95782 0.95191 1.02650 1.22247 0.87021 0.98124 1.00305 1.61982 1.07922 1.21272 1.35344 1.22490 1.01058 1.00121 0.88987 1.22003 1.00084 0.88943 0.94799 1.21931 0.99795 0.92837 0.94879 0.91207 1.22177 0.98997 0.96823 0.95311 1.23077 0.98318 0.87537 1.00819 1.64475 1.38150 1.02738 1.18687 1.21969 0.93867 0.89289 1.03139 1.20732 0.86436 0.86955 0.83120 1.90466 1.20487 1.86848 1.52273 1.41945 1.14273 1.05797 1.59154 1.19684 0.99055 0.84051 1.43257 0.90390 1.26050 0.95443 1.03262 0.96594 1.69683 1.07094 1.32799 1.46642 0.84870 0.78162 0.76994 0.78300 1.19828 1.19543 1.19534 1.23150 0.99060 0.97992 0.87826 0.91551 0.92987 0.92864 0.91382 0.91453 0.91620 0.95458 0.90904 0.89923 0.96046 0.95527 0.90469 0.90440 0.90256 0.92824 0.89634 0.91594 0.87295 0.77050 0.91293 0.91988 0.94978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.11 -1.67 5.87 30.59 0.18 -1.49 16 3 C 0.05 0.95 4.78 86.30 0.41 1.36 16 4 N -0.54 -10.50 4.44 -922.46 -4.10 -14.59 16 5 C 0.02 0.33 9.33 127.69 1.19 1.52 16 6 C 0.07 1.61 4.33 86.30 0.37 1.98 16 7 C -0.07 -1.98 3.09 -9.59 -0.03 -2.01 16 8 H 0.07 1.99 6.85 -2.38 -0.02 1.97 16 9 C -0.10 -2.13 6.27 31.47 0.20 -1.93 16 10 C 0.03 0.76 6.70 86.45 0.58 1.33 16 11 N -0.52 -17.92 5.12 -887.57 -4.55 -22.47 16 12 C 0.05 1.80 5.33 85.56 0.46 2.26 16 13 C 0.44 21.70 7.41 87.66 0.65 22.35 16 14 O -0.61 -34.86 13.81 -3.07 -0.04 -34.90 16 15 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 16 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 20 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.05 1.67 5.00 86.65 0.43 2.11 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.90 6.44 -2.39 -0.02 0.88 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.39 6.67 -2.39 -0.02 1.37 16 31 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 32 H 0.07 1.05 8.10 -2.38 -0.02 1.03 16 33 H 0.08 1.07 6.23 -2.38 -0.01 1.05 16 34 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.03 0.66 8.00 -2.39 -0.02 0.65 16 36 H 0.08 1.69 7.89 -2.39 -0.02 1.67 16 37 H 0.08 1.57 7.84 -2.38 -0.02 1.55 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.23 7.67 -2.39 -0.02 1.21 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 2.18 7.97 -2.38 -0.02 2.16 16 42 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 43 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 44 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 45 H 0.06 2.68 6.39 -2.39 -0.02 2.67 16 46 H 0.03 1.11 7.92 -2.39 -0.02 1.09 16 Total: -1.00 -66.35 360.38 -1.35 -67.69 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.21 Total: 33.07 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.44 Total: 7.60 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -9.98 Total: -118.98 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.04 Total: -34.90 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -66.35 -1.35 -67.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174966078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.087 kcal (2) G-P(sol) polarization free energy of solvation -66.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds