Wall clock time and date at job start Wed Apr 15 2020 11:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47189 * 2 1 4 4 N 1.46506 * 109.46981 * 119.99860 * 2 1 3 5 5 C 1.46503 * 119.99824 * 299.99827 * 4 2 1 6 6 C 1.34768 * 120.00337 * 120.00475 * 4 2 1 7 7 O 1.21589 * 120.00078 * 359.97438 * 6 4 2 8 8 N 1.34774 * 120.00109 * 180.02562 * 6 4 2 9 9 C 1.46506 * 120.00150 * 179.97438 * 8 6 4 10 10 C 1.52989 * 109.47243 * 180.02562 * 9 8 6 11 11 C 1.53349 * 109.42090 * 295.12458 * 10 9 8 12 12 C 1.53189 * 109.15350 * 178.67324 * 11 10 9 13 13 N 1.46931 * 108.89061 * 54.57922 * 12 11 10 14 14 C 1.36938 * 120.62972 * 126.29441 * 13 12 11 15 15 H 1.08005 * 120.00173 * 331.83979 * 14 13 12 16 16 C 1.38813 * 119.99936 * 151.83343 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08512 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08402 * 16 14 13 19 19 H 1.48500 * 109.46925 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46793 * 120.00276 * 18 16 14 21 21 H 1.48498 * 109.46814 * 240.00176 * 18 16 14 22 22 C 1.46927 * 118.74004 * 306.32424 * 13 12 11 23 23 C 1.53047 * 109.46104 * 175.00010 * 10 9 8 24 24 H 1.08994 * 109.47584 * 300.00458 * 1 2 3 25 25 H 1.09004 * 109.46466 * 60.00297 * 1 2 3 26 26 H 1.09003 * 109.46782 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47584 * 239.99542 * 2 1 3 28 28 H 1.09003 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47124 * 299.99769 * 3 2 1 30 30 H 1.09007 * 109.47280 * 59.99588 * 3 2 1 31 31 H 1.08990 * 109.47725 * 270.00536 * 5 4 2 32 32 H 1.09011 * 109.47070 * 30.00384 * 5 4 2 33 33 H 1.09001 * 109.47034 * 149.99637 * 5 4 2 34 34 H 0.97003 * 120.00078 * 359.97438 * 8 6 4 35 35 H 1.09000 * 109.46657 * 59.99515 * 9 8 6 36 36 H 1.09008 * 109.46786 * 300.00364 * 9 8 6 37 37 H 1.08997 * 109.46256 * 55.02918 * 10 9 8 38 38 H 1.09001 * 109.68292 * 58.70967 * 11 10 9 39 39 H 1.08994 * 109.47524 * 298.51791 * 11 10 9 40 40 H 1.09000 * 109.58714 * 294.72587 * 12 11 10 41 41 H 1.09003 * 109.58688 * 174.43867 * 12 11 10 42 42 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.58255 * 173.39566 * 22 13 12 44 44 H 1.09000 * 109.58150 * 293.67300 * 22 13 12 45 45 H 1.09000 * 109.49464 * 61.43304 * 23 10 9 46 46 H 1.08999 * 109.52117 * 301.35057 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7932 -1.7863 1.0727 7 8 3.0867 -2.2020 -0.0316 8 7 3.2419 -2.4219 2.1732 9 6 4.0838 -3.6133 2.0389 10 6 4.4524 -4.1366 3.4285 11 6 5.3227 -3.1001 4.1494 12 6 5.6605 -3.6155 5.5519 13 7 6.2749 -4.9450 5.4349 14 6 7.4878 -5.2065 6.0142 15 1 8.2021 -4.4088 6.1553 16 6 7.7993 -6.4969 6.4202 17 7 6.8437 -7.3906 6.5630 18 14 9.5748 -6.9649 6.7638 19 1 10.4507 -5.7885 6.5313 20 1 9.7056 -7.4077 8.1752 21 1 9.9793 -8.0705 5.8586 22 6 5.5635 -5.9885 4.6839 23 6 5.2263 -5.4498 3.2901 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.4155 0.5275 2.8568 32 1 0.6903 0.2975 2.4844 33 1 1.6236 -1.0225 3.2292 34 1 3.0075 -2.0905 3.0542 35 1 4.9923 -3.3567 1.4941 36 1 3.5386 -4.3839 1.4936 37 1 3.5432 -4.3099 4.0042 38 1 4.7810 -2.1575 4.2289 39 1 6.2435 -2.9447 3.5873 40 1 4.7486 -3.6853 6.1450 41 1 6.3587 -2.9314 6.0343 42 1 7.0614 -8.2923 6.8463 43 1 6.1987 -6.8694 4.5915 44 1 4.6450 -6.2536 5.2077 45 1 6.1479 -5.2722 2.7359 46 1 4.6155 -6.1780 2.7566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195577613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:58 Heat of formation + Delta-G solvation = -17.169106 kcal Electronic energy + Delta-G solvation = -23108.678173 eV Core-core repulsion = 19840.673639 eV Total energy + Delta-G solvation = -3268.004534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33038 -38.00266 -36.60882 -34.92671 -33.20544 -31.94917 -30.59619 -29.65492 -27.49231 -27.21750 -26.58813 -24.02818 -22.35874 -21.74685 -20.92487 -19.59614 -19.05133 -18.26110 -16.74055 -16.45859 -15.81926 -15.01906 -14.74166 -14.55148 -14.27768 -13.90549 -13.65682 -13.50299 -13.32871 -13.27820 -13.05169 -12.77519 -12.44994 -12.31049 -12.25160 -12.14930 -11.84389 -11.54325 -11.31731 -11.07984 -10.97218 -10.72813 -10.47772 -10.22726 -10.18347 -10.09500 -9.88844 -9.53440 -9.42859 -9.06632 -8.62157 -8.46196 -6.65795 -5.78139 -3.20518 2.59060 3.22233 3.37756 3.45781 3.47969 3.92361 4.50553 4.60785 4.81166 4.81569 5.00812 5.14004 5.20082 5.26895 5.27359 5.31702 5.40251 5.41070 5.44456 5.51348 5.62342 5.68729 5.84787 5.90686 5.96290 5.99541 6.08043 6.16954 6.33823 6.39514 6.46501 6.55990 6.62523 6.72457 6.78358 6.82649 6.89653 6.99870 7.39007 7.67443 7.80810 7.94151 8.46437 8.61315 9.22628 9.86179 10.42904 11.30382 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.042496 B = 0.003009 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.731620 B = 9302.468174 C = 9443.877203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.160 4.160 4 N -0.631 5.631 5 C 0.078 3.922 6 C 0.704 3.296 7 O -0.594 6.594 8 N -0.740 5.740 9 C 0.141 3.859 10 C -0.089 4.089 11 C -0.126 4.126 12 C 0.145 3.855 13 N -0.593 5.593 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.172 3.828 23 C -0.132 4.132 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.396 0.604 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.088 0.912 44 H 0.017 0.983 45 H 0.058 0.942 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.772 15.152 -9.380 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 C -0.219 4.219 4 N -0.370 5.370 5 C -0.066 4.066 6 C 0.405 3.595 7 O -0.473 6.473 8 N -0.396 5.396 9 C 0.017 3.983 10 C -0.109 4.109 11 C -0.165 4.165 12 C 0.019 3.981 13 N -0.315 5.315 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.215 1.215 22 C 0.046 3.954 23 C -0.172 4.172 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.509 14.659 -10.113 21.763 hybrid contribution 0.691 -0.099 0.768 1.037 sum -11.818 14.560 -9.345 20.952 Atomic orbital electron populations 1.22163 0.95254 1.02431 1.02135 1.20910 0.93571 0.92675 0.88566 1.22151 1.01849 0.95766 1.02115 1.47103 1.53888 1.29079 1.06895 1.21680 1.01218 0.99832 0.83874 1.15918 0.78867 0.79895 0.84815 1.90893 1.63336 1.68116 1.24956 1.45403 1.55261 1.31438 1.07469 1.21440 0.93543 0.85186 0.98101 1.21364 0.98949 0.96966 0.93578 1.22116 0.98991 0.96168 0.99256 1.20885 0.95972 0.88572 0.92682 1.44059 1.20834 1.07116 1.59541 1.19227 0.90979 0.94362 1.33492 0.91731 1.25046 0.97493 0.97924 0.99253 1.70038 1.30245 1.04332 1.50155 0.86240 0.84929 0.78258 0.77455 1.20274 1.21766 1.21544 1.20762 0.95752 0.92542 0.86355 1.22168 0.98846 0.94680 1.01510 0.92413 0.91441 0.92241 0.88009 0.92245 0.91512 0.92473 0.92670 0.90792 0.91471 0.76845 0.91838 0.92053 0.91438 0.93590 0.92172 0.96674 0.92960 0.93706 0.89426 0.96454 0.92358 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.17 37.16 0.34 -0.84 16 2 C 0.15 1.39 3.25 -67.93 -0.22 1.17 16 3 C -0.16 -1.21 9.19 37.16 0.34 -0.87 16 4 N -0.63 -6.79 2.76 -179.67 -0.50 -7.29 16 5 C 0.08 0.57 9.26 59.85 0.55 1.13 16 6 C 0.70 10.16 8.28 -86.93 -0.72 9.44 16 7 O -0.59 -10.90 15.67 5.29 0.08 -10.82 16 8 N -0.74 -9.72 5.14 -65.23 -0.34 -10.06 16 9 C 0.14 2.10 5.06 -4.04 -0.02 2.08 16 10 C -0.09 -1.43 2.19 -90.42 -0.20 -1.63 16 11 C -0.13 -2.08 5.27 -26.45 -0.14 -2.22 16 12 C 0.15 2.96 6.50 -3.71 -0.02 2.93 16 13 N -0.59 -14.69 2.99 -172.32 -0.52 -15.21 16 14 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 15 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 16 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 17 N -0.90 -26.17 11.20 55.49 0.62 -25.55 16 18 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 23 C -0.13 -2.47 5.36 -26.61 -0.14 -2.61 16 24 H 0.06 0.36 6.66 -51.93 -0.35 0.01 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.10 1.20 6.90 -51.93 -0.36 0.85 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.42 6.43 -51.92 -0.33 0.09 16 33 H 0.07 0.47 6.36 -51.93 -0.33 0.14 16 34 H 0.40 4.35 5.38 -40.82 -0.22 4.13 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -32.07 354.62 -8.94 -41.01 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.13 Total: 0.37 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.48 Total: 5.52 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.73 Total: -58.10 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.07 -8.94 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195577613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.839 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds