Wall clock time and date at job start Wed Apr 15 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47189 * 2 1 4 4 N 1.46506 * 109.46981 * 119.99860 * 2 1 3 5 5 C 1.46503 * 119.99824 * 299.99827 * 4 2 1 6 6 C 1.34768 * 120.00337 * 120.00475 * 4 2 1 7 7 O 1.21589 * 120.00078 * 359.97438 * 6 4 2 8 8 N 1.34774 * 120.00109 * 180.02562 * 6 4 2 9 9 C 1.46506 * 120.00150 * 179.97438 * 8 6 4 10 10 C 1.52989 * 109.47243 * 180.02562 * 9 8 6 11 11 C 1.53349 * 109.42090 * 295.12458 * 10 9 8 12 12 C 1.53189 * 109.15350 * 178.67324 * 11 10 9 13 13 N 1.46931 * 108.89061 * 54.57922 * 12 11 10 14 14 C 1.36938 * 120.62972 * 126.29441 * 13 12 11 15 15 H 1.08005 * 120.00173 * 331.83979 * 14 13 12 16 16 C 1.38813 * 119.99936 * 151.83343 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08512 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08402 * 16 14 13 19 19 H 1.48500 * 109.46925 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46793 * 120.00276 * 18 16 14 21 21 H 1.48498 * 109.46814 * 240.00176 * 18 16 14 22 22 C 1.46927 * 118.74004 * 306.32424 * 13 12 11 23 23 C 1.53047 * 109.46104 * 175.00010 * 10 9 8 24 24 H 1.08994 * 109.47584 * 300.00458 * 1 2 3 25 25 H 1.09004 * 109.46466 * 60.00297 * 1 2 3 26 26 H 1.09003 * 109.46782 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47584 * 239.99542 * 2 1 3 28 28 H 1.09003 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47124 * 299.99769 * 3 2 1 30 30 H 1.09007 * 109.47280 * 59.99588 * 3 2 1 31 31 H 1.08990 * 109.47725 * 270.00536 * 5 4 2 32 32 H 1.09011 * 109.47070 * 30.00384 * 5 4 2 33 33 H 1.09001 * 109.47034 * 149.99637 * 5 4 2 34 34 H 0.97003 * 120.00078 * 359.97438 * 8 6 4 35 35 H 1.09000 * 109.46657 * 59.99515 * 9 8 6 36 36 H 1.09008 * 109.46786 * 300.00364 * 9 8 6 37 37 H 1.08997 * 109.46256 * 55.02918 * 10 9 8 38 38 H 1.09001 * 109.68292 * 58.70967 * 11 10 9 39 39 H 1.08994 * 109.47524 * 298.51791 * 11 10 9 40 40 H 1.09000 * 109.58714 * 294.72587 * 12 11 10 41 41 H 1.09003 * 109.58688 * 174.43867 * 12 11 10 42 42 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.58255 * 173.39566 * 22 13 12 44 44 H 1.09000 * 109.58150 * 293.67300 * 22 13 12 45 45 H 1.09000 * 109.49464 * 61.43304 * 23 10 9 46 46 H 1.08999 * 109.52117 * 301.35057 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7932 -1.7863 1.0727 7 8 3.0867 -2.2020 -0.0316 8 7 3.2419 -2.4219 2.1732 9 6 4.0838 -3.6133 2.0389 10 6 4.4524 -4.1366 3.4285 11 6 5.3227 -3.1001 4.1494 12 6 5.6605 -3.6155 5.5519 13 7 6.2749 -4.9450 5.4349 14 6 7.4878 -5.2065 6.0142 15 1 8.2021 -4.4088 6.1553 16 6 7.7993 -6.4969 6.4202 17 7 6.8437 -7.3906 6.5630 18 14 9.5748 -6.9649 6.7638 19 1 10.4507 -5.7885 6.5313 20 1 9.7056 -7.4077 8.1752 21 1 9.9793 -8.0705 5.8586 22 6 5.5635 -5.9885 4.6839 23 6 5.2263 -5.4498 3.2901 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.4155 0.5275 2.8568 32 1 0.6903 0.2975 2.4844 33 1 1.6236 -1.0225 3.2292 34 1 3.0075 -2.0905 3.0542 35 1 4.9923 -3.3567 1.4941 36 1 3.5386 -4.3839 1.4936 37 1 3.5432 -4.3099 4.0042 38 1 4.7810 -2.1575 4.2289 39 1 6.2435 -2.9447 3.5873 40 1 4.7486 -3.6853 6.1450 41 1 6.3587 -2.9314 6.0343 42 1 7.0614 -8.2923 6.8463 43 1 6.1987 -6.8694 4.5915 44 1 4.6450 -6.2536 5.2077 45 1 6.1479 -5.2722 2.7359 46 1 4.6155 -6.1780 2.7566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195577613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:57 Heat of formation + Delta-G solvation = -36.940059 kcal Electronic energy + Delta-G solvation = -23109.535506 eV Core-core repulsion = 19840.673639 eV Total energy + Delta-G solvation = -3268.861867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.36158 -39.48710 -37.59757 -36.36528 -34.66901 -33.17520 -32.12616 -31.32115 -28.39253 -28.06172 -27.72197 -25.74185 -23.87810 -23.04531 -22.24254 -20.87757 -20.28600 -19.25440 -18.61512 -17.46351 -16.88551 -16.77792 -15.91909 -15.76715 -15.41210 -15.30088 -15.16629 -14.83326 -14.65907 -14.29206 -14.01686 -13.85816 -13.82868 -13.38639 -13.25430 -13.00772 -12.96325 -12.83447 -12.78141 -12.58843 -12.23154 -12.19430 -11.98830 -11.84013 -11.75535 -11.60975 -11.31463 -11.12954 -11.06911 -10.53586 -10.19683 -9.48609 -8.66190 -7.86858 -5.31733 1.45507 1.47923 1.57970 1.66584 2.13790 2.51591 3.00742 3.27769 3.71989 3.84917 3.93144 3.95653 4.09107 4.18610 4.24544 4.36827 4.52089 4.54675 4.65897 4.69690 4.71811 4.73706 4.76628 4.80299 4.87917 4.94476 4.96946 5.02019 5.06483 5.13915 5.25764 5.29283 5.30287 5.37286 5.40538 5.50608 5.56017 5.64150 5.66994 5.80149 5.98046 6.40837 6.97304 7.16530 7.55900 7.88867 8.39520 9.19439 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.042496 B = 0.003009 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.731620 B = 9302.468174 C = 9443.877203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 C -0.153 4.153 4 N -0.626 5.626 5 C 0.070 3.930 6 C 0.696 3.304 7 O -0.641 6.641 8 N -0.730 5.730 9 C 0.156 3.844 10 C -0.076 4.076 11 C -0.112 4.112 12 C 0.140 3.860 13 N -0.613 5.613 14 C -0.261 4.261 15 H 0.064 0.936 16 C -0.052 4.052 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.178 3.822 23 C -0.122 4.122 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.408 0.592 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.019 0.981 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.051 0.949 44 H 0.000 1.000 45 H 0.049 0.951 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.884 17.510 -9.382 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 C -0.211 4.211 4 N -0.363 5.363 5 C -0.073 4.073 6 C 0.397 3.603 7 O -0.523 6.523 8 N -0.388 5.388 9 C 0.031 3.969 10 C -0.095 4.095 11 C -0.151 4.151 12 C 0.015 3.985 13 N -0.336 5.336 14 C -0.391 4.391 15 H 0.082 0.918 16 C -0.247 4.247 17 N -0.581 5.581 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.053 3.947 23 C -0.162 4.162 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.247 0.753 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.018 0.982 45 H 0.068 0.932 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.654 17.087 -10.090 24.087 hybrid contribution 0.982 -0.768 0.784 1.472 sum -12.672 16.319 -9.305 22.660 Atomic orbital electron populations 1.22101 0.93269 1.01946 1.03844 1.21049 0.95078 0.93254 0.87044 1.22087 1.00680 0.94523 1.03779 1.47220 1.52537 1.27814 1.08750 1.21953 1.02816 1.00461 0.82021 1.16143 0.79229 0.80698 0.84200 1.90862 1.65136 1.69631 1.26709 1.45172 1.54838 1.30801 1.07949 1.21100 0.93290 0.85791 0.96737 1.21187 0.98685 0.95286 0.94364 1.21964 0.99089 0.97659 0.96423 1.21067 0.95752 0.86522 0.95137 1.44342 1.20667 1.08813 1.59816 1.19534 0.92228 0.94506 1.32828 0.91783 1.25774 1.01031 0.98023 0.99856 1.70180 1.31984 1.04379 1.51541 0.85254 0.80722 0.77911 0.76856 1.19197 1.21848 1.21775 1.20557 0.93915 0.91620 0.88656 1.21974 0.99303 0.96624 0.98265 0.90530 0.89904 0.93790 0.91156 0.93976 0.89951 0.90696 0.91509 0.88504 0.90797 0.75326 0.93105 0.92470 0.90471 0.89870 0.93281 0.96260 0.93029 0.94148 0.93102 0.98240 0.93190 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.17 71.98 0.66 -1.22 16 2 C 0.14 2.43 3.25 44.99 0.15 2.58 16 3 C -0.15 -1.94 9.19 71.98 0.66 -1.28 16 4 N -0.63 -12.24 2.76 -840.62 -2.32 -14.56 16 5 C 0.07 0.79 9.26 127.77 1.18 1.97 16 6 C 0.70 19.29 8.28 179.06 1.48 20.77 16 7 O -0.64 -23.64 15.67 -4.00 -0.06 -23.71 16 8 N -0.73 -17.67 5.14 -478.54 -2.46 -20.13 16 9 C 0.16 4.40 5.06 86.37 0.44 4.83 16 10 C -0.08 -2.30 2.19 -10.66 -0.02 -2.32 16 11 C -0.11 -3.47 5.27 30.77 0.16 -3.31 16 12 C 0.14 5.55 6.50 86.36 0.56 6.11 16 13 N -0.61 -30.55 2.99 -699.08 -2.09 -32.64 16 14 C -0.26 -14.41 9.58 84.03 0.81 -13.60 16 15 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 16 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 17 N -0.93 -55.54 11.20 21.65 0.24 -55.30 16 18 Si 0.96 45.24 29.59 68.60 2.03 47.27 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 22 C 0.18 8.54 5.30 86.36 0.46 9.00 16 23 C -0.12 -4.51 5.36 30.67 0.16 -4.35 16 24 H 0.08 0.65 6.66 -2.39 -0.02 0.64 16 25 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 1.68 6.90 -2.39 -0.02 1.67 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.70 7.67 -2.38 -0.02 0.68 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.68 6.43 -2.38 -0.02 0.67 16 33 H 0.07 0.75 6.36 -2.39 -0.02 0.74 16 34 H 0.41 7.65 5.38 -92.71 -0.50 7.15 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.69 8.14 -2.38 -0.02 1.68 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.08 1.98 7.16 -2.39 -0.02 1.96 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.05 2.80 6.06 -2.39 -0.01 2.78 16 44 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -71.63 354.62 2.90 -68.73 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.44 Total: 13.64 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 7.12 Total: 16.70 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -6.63 Total: -122.63 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.06 Total: -23.71 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.63 2.90 -68.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195577613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.790 kcal (2) G-P(sol) polarization free energy of solvation -71.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds