Wall clock time and date at job start Wed Apr 15 2020 11:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 N 1.46492 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99687 * 269.99922 * 4 3 2 6 6 H 1.07999 * 119.99568 * 148.64258 * 5 4 3 7 7 C 1.38949 * 120.00298 * 328.63924 * 5 4 3 8 8 N 1.31412 * 119.99727 * 158.79640 * 7 5 4 9 9 Si 1.86795 * 119.99813 * 338.79431 * 7 5 4 10 10 H 1.48503 * 109.47256 * 95.48592 * 9 7 5 11 11 H 1.48498 * 109.47393 * 215.48413 * 9 7 5 12 12 H 1.48497 * 109.47448 * 335.48434 * 9 7 5 13 13 C 1.34777 * 120.00270 * 90.00224 * 4 3 2 14 14 O 1.21291 * 119.99729 * 355.07886 * 13 4 3 15 15 C 1.50700 * 119.99976 * 175.08407 * 13 4 3 16 16 H 1.09003 * 109.47174 * 320.60066 * 15 13 4 17 17 C 1.52994 * 109.47463 * 80.60595 * 15 13 4 18 18 N 1.46901 * 109.46557 * 200.60895 * 15 13 4 19 19 C 1.46955 * 110.99781 * 164.64354 * 18 15 13 20 20 C 1.53060 * 109.36728 * 183.18495 * 19 18 15 21 21 N 1.46957 * 109.36131 * 301.60006 * 20 19 18 22 22 C 1.46894 * 110.99711 * 183.18716 * 21 20 19 23 23 C 1.46957 * 110.88178 * 59.31435 * 21 20 19 24 24 C 1.46963 * 110.99882 * 288.43596 * 18 15 13 25 25 H 1.09002 * 109.47175 * 60.00303 * 1 2 3 26 26 H 1.09003 * 109.46824 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47711 * 300.00215 * 1 2 3 28 28 H 1.08994 * 109.47189 * 240.00346 * 2 1 3 29 29 H 1.08997 * 109.46714 * 119.99798 * 2 1 3 30 30 H 1.09004 * 109.47174 * 59.99407 * 3 2 1 31 31 H 1.08999 * 109.47248 * 300.00264 * 3 2 1 32 32 H 0.97002 * 119.99490 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47013 * 59.75690 * 17 15 13 34 34 H 1.08998 * 109.47010 * 179.75746 * 17 15 13 35 35 H 1.08996 * 109.47505 * 299.75898 * 17 15 13 36 36 H 1.08997 * 109.49294 * 63.21853 * 19 18 15 37 37 H 1.09002 * 109.51004 * 303.16138 * 19 18 15 38 38 H 1.08996 * 109.49123 * 181.62860 * 20 19 18 39 39 H 1.08998 * 109.48549 * 61.56069 * 20 19 18 40 40 H 1.08996 * 109.47978 * 59.99856 * 22 21 20 41 41 H 1.09001 * 109.47096 * 299.99407 * 22 21 20 42 42 H 1.09008 * 109.46959 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.48674 * 60.64899 * 23 21 20 44 44 H 1.09000 * 109.48927 * 180.70749 * 23 21 20 45 45 H 1.08998 * 109.49000 * 296.78091 * 24 18 15 46 46 H 1.08997 * 109.48384 * 56.82635 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.4428 1.1883 6 1 5.1515 0.9561 1.2570 7 6 3.6469 2.0692 2.3034 8 7 4.0561 1.7379 3.5074 9 14 2.3353 3.3822 2.0909 10 1 0.9913 2.7672 2.2348 11 1 2.5128 4.4314 3.1266 12 1 2.4589 3.9918 0.7425 13 6 4.1793 1.4425 -1.1663 14 8 3.5767 1.3522 -2.2150 15 6 5.6822 1.5544 -1.1680 16 1 5.9945 2.2654 -0.4030 17 6 6.2960 0.1845 -0.8721 18 7 6.1369 2.0208 -2.4847 19 6 7.5289 2.4880 -2.4260 20 6 7.9379 3.0378 -3.7947 21 7 7.7807 1.9860 -4.8089 22 6 8.2355 2.4523 -6.1256 23 6 6.3887 1.5187 -4.8676 24 6 5.9798 0.9690 -3.4990 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.6767 2.1749 4.2859 33 1 5.9803 -0.5274 -1.6348 34 1 7.3830 0.2647 -0.8777 35 1 5.9620 -0.1596 0.1066 36 1 8.1808 1.6563 -2.1587 37 1 7.6175 3.2748 -1.6769 38 1 8.9792 3.3583 -3.7614 39 1 7.3037 3.8867 -4.0498 40 1 9.2882 2.7291 -6.0694 41 1 7.6475 3.3192 -6.4270 42 1 8.1077 1.6547 -6.8575 43 1 5.7368 2.3505 -5.1349 44 1 6.3005 0.7319 -5.6167 45 1 6.6140 0.1200 -3.2439 46 1 4.9386 0.6482 -3.5319 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330867486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:02 Heat of formation + Delta-G solvation = -4.930666 kcal Electronic energy + Delta-G solvation = -24275.626665 eV Core-core repulsion = 21008.152829 eV Total energy + Delta-G solvation = -3267.473836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.73651 -38.37359 -35.85244 -34.82797 -33.00002 -31.73271 -30.76177 -30.38538 -27.19795 -26.08592 -25.07040 -23.93674 -23.35877 -22.20802 -21.13108 -19.33611 -18.68556 -17.15526 -16.33871 -15.82666 -15.29179 -14.93600 -14.73628 -14.52791 -14.38617 -14.21312 -13.90327 -13.64909 -13.21779 -13.07505 -12.65993 -12.45135 -12.33093 -12.21475 -11.83711 -11.73304 -11.62050 -11.40924 -11.38420 -11.08418 -10.92699 -10.84809 -10.63473 -10.56649 -10.33517 -10.29771 -9.99978 -9.66351 -9.08782 -8.48984 -8.28412 -7.85568 -7.68517 -6.50927 -4.04663 3.02718 3.20916 3.27628 3.69902 4.02717 4.06133 4.14104 4.64001 4.96609 5.07718 5.12641 5.33749 5.40935 5.53884 5.56844 5.61496 5.65504 5.68304 5.69938 5.75751 5.78750 5.83928 5.88176 5.92548 5.99818 6.03321 6.13409 6.25631 6.31182 6.38190 6.40743 6.42192 6.43313 6.56430 6.66544 6.76225 6.92056 7.06686 7.10376 7.33053 7.51689 7.59185 8.05313 8.24891 8.94453 9.37754 9.71549 10.59460 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.005166 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.214858 B = 5419.228495 C = 6008.579866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.106 3.894 4 N -0.463 5.463 5 C -0.345 4.345 6 H 0.112 0.888 7 C 0.065 3.935 8 N -0.859 5.859 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.264 1.264 13 C 0.489 3.511 14 O -0.587 6.587 15 C 0.083 3.917 16 H 0.106 0.894 17 C -0.175 4.175 18 N -0.519 5.519 19 C 0.055 3.945 20 C 0.060 3.940 21 N -0.547 5.547 22 C 0.026 3.974 23 C 0.060 3.940 24 C 0.049 3.951 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.275 0.725 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 0.049 -10.345 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.017 4.017 4 N -0.184 5.184 5 C -0.472 4.472 6 H 0.129 0.871 7 C -0.142 4.142 8 N -0.495 5.495 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.188 1.188 13 C 0.278 3.722 14 O -0.472 6.472 15 C -0.028 4.028 16 H 0.123 0.877 17 C -0.234 4.234 18 N -0.244 5.244 19 C -0.074 4.074 20 C -0.068 4.068 21 N -0.272 5.272 22 C -0.122 4.122 23 C -0.068 4.068 24 C -0.079 4.079 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.815 0.043 -10.635 11.298 hybrid contribution -0.606 0.760 0.300 1.017 sum 3.209 0.803 -10.335 10.851 Atomic orbital electron populations 1.21716 0.96476 1.01063 1.01319 1.21754 0.94688 0.97934 1.02553 1.21615 0.82707 0.96695 1.00645 1.43766 1.03808 1.65021 1.05771 1.19248 1.06448 1.36176 0.85314 0.87115 1.25287 0.97446 0.96681 0.94805 1.69750 1.42735 1.39173 0.97803 0.86888 0.81270 0.82107 0.78587 1.20261 1.21938 1.18829 1.19994 0.88917 0.80055 0.83196 1.90447 1.70091 1.55171 1.31458 1.21344 0.93692 0.97047 0.90745 0.87652 1.22317 1.00154 0.97539 1.03434 1.62023 1.19323 1.37383 1.05652 1.22164 0.89245 0.99613 0.96330 1.22141 1.00274 0.92726 0.91698 1.62200 1.22161 1.36755 1.06108 1.22319 1.00183 0.98974 0.90746 1.22187 0.87318 0.99359 0.97966 1.22439 1.03254 0.92417 0.89757 0.93035 0.93005 0.93099 0.91926 0.91256 0.92375 0.91365 0.91482 0.92547 0.92742 0.90283 0.94081 0.90379 0.90750 0.94140 0.91685 0.95837 0.91641 0.94127 0.90920 0.94578 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.57 6.26 -26.73 -0.17 -2.74 16 3 C 0.11 2.37 4.16 -4.05 -0.02 2.35 16 4 N -0.46 -10.99 2.30 -114.81 -0.26 -11.26 16 5 C -0.35 -8.67 8.72 -14.93 -0.13 -8.80 16 6 H 0.11 2.84 5.48 -52.49 -0.29 2.55 16 7 C 0.06 1.68 5.36 -17.47 -0.09 1.58 16 8 N -0.86 -23.12 13.96 55.50 0.77 -22.35 16 9 Si 0.88 20.51 24.71 -169.99 -4.20 16.31 16 10 H -0.27 -6.15 6.73 56.52 0.38 -5.77 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.26 -6.28 7.06 56.52 0.40 -5.88 16 13 C 0.49 11.22 6.81 -10.99 -0.07 11.14 16 14 O -0.59 -14.27 13.75 5.55 0.08 -14.20 16 15 C 0.08 1.63 1.90 -68.87 -0.13 1.50 16 16 H 0.11 2.17 7.21 -51.93 -0.37 1.79 16 17 C -0.18 -3.13 8.09 37.15 0.30 -2.83 16 18 N -0.52 -9.37 4.47 -227.88 -1.02 -10.39 16 19 C 0.05 0.83 5.39 -3.76 -0.02 0.81 16 20 C 0.06 0.80 5.62 -3.76 -0.02 0.78 16 21 N -0.55 -7.39 4.97 -242.76 -1.21 -8.60 16 22 C 0.03 0.28 9.60 60.06 0.58 0.86 16 23 C 0.06 0.88 5.62 -3.77 -0.02 0.86 16 24 C 0.05 0.84 4.47 -3.77 -0.02 0.82 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.06 1.33 2.35 -51.93 -0.12 1.21 16 31 H 0.07 1.52 7.50 -51.93 -0.39 1.13 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.06 0.99 6.40 -51.93 -0.33 0.66 16 34 H 0.05 0.87 6.97 -51.93 -0.36 0.50 16 35 H 0.08 1.52 6.14 -51.93 -0.32 1.20 16 36 H 0.04 0.62 6.98 -51.93 -0.36 0.25 16 37 H 0.08 1.12 8.03 -51.93 -0.42 0.71 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.06 0.63 8.13 -51.92 -0.42 0.21 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 45 H 0.04 0.61 6.42 -51.93 -0.33 0.27 16 46 H 0.11 2.11 5.69 -51.93 -0.30 1.82 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -27.93 342.12 -7.96 -35.88 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.83 Total: 5.12 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 0.55 Total: 4.31 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -1.71 Total: -52.59 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.20 Total: 16.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.93 -7.96 -35.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330867486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.954 kcal (2) G-P(sol) polarization free energy of solvation -27.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds