Wall clock time and date at job start Wed Apr 15 2020 11:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 N 1.46492 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99687 * 269.99922 * 4 3 2 6 6 H 1.07999 * 119.99568 * 148.64258 * 5 4 3 7 7 C 1.38949 * 120.00298 * 328.63924 * 5 4 3 8 8 N 1.31412 * 119.99727 * 158.79640 * 7 5 4 9 9 Si 1.86795 * 119.99813 * 338.79431 * 7 5 4 10 10 H 1.48503 * 109.47256 * 95.48592 * 9 7 5 11 11 H 1.48498 * 109.47393 * 215.48413 * 9 7 5 12 12 H 1.48497 * 109.47448 * 335.48434 * 9 7 5 13 13 C 1.34777 * 120.00270 * 90.00224 * 4 3 2 14 14 O 1.21291 * 119.99729 * 355.07886 * 13 4 3 15 15 C 1.50700 * 119.99976 * 175.08407 * 13 4 3 16 16 H 1.09003 * 109.47174 * 320.60066 * 15 13 4 17 17 C 1.52994 * 109.47463 * 80.60595 * 15 13 4 18 18 N 1.46901 * 109.46557 * 200.60895 * 15 13 4 19 19 C 1.46955 * 110.99781 * 164.64354 * 18 15 13 20 20 C 1.53060 * 109.36728 * 183.18495 * 19 18 15 21 21 N 1.46957 * 109.36131 * 301.60006 * 20 19 18 22 22 C 1.46894 * 110.99711 * 183.18716 * 21 20 19 23 23 C 1.46957 * 110.88178 * 59.31435 * 21 20 19 24 24 C 1.46963 * 110.99882 * 288.43596 * 18 15 13 25 25 H 1.09002 * 109.47175 * 60.00303 * 1 2 3 26 26 H 1.09003 * 109.46824 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47711 * 300.00215 * 1 2 3 28 28 H 1.08994 * 109.47189 * 240.00346 * 2 1 3 29 29 H 1.08997 * 109.46714 * 119.99798 * 2 1 3 30 30 H 1.09004 * 109.47174 * 59.99407 * 3 2 1 31 31 H 1.08999 * 109.47248 * 300.00264 * 3 2 1 32 32 H 0.97002 * 119.99490 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47013 * 59.75690 * 17 15 13 34 34 H 1.08998 * 109.47010 * 179.75746 * 17 15 13 35 35 H 1.08996 * 109.47505 * 299.75898 * 17 15 13 36 36 H 1.08997 * 109.49294 * 63.21853 * 19 18 15 37 37 H 1.09002 * 109.51004 * 303.16138 * 19 18 15 38 38 H 1.08996 * 109.49123 * 181.62860 * 20 19 18 39 39 H 1.08998 * 109.48549 * 61.56069 * 20 19 18 40 40 H 1.08996 * 109.47978 * 59.99856 * 22 21 20 41 41 H 1.09001 * 109.47096 * 299.99407 * 22 21 20 42 42 H 1.09008 * 109.46959 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.48674 * 60.64899 * 23 21 20 44 44 H 1.09000 * 109.48927 * 180.70749 * 23 21 20 45 45 H 1.08998 * 109.49000 * 296.78091 * 24 18 15 46 46 H 1.08997 * 109.48384 * 56.82635 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.4428 1.1883 6 1 5.1515 0.9561 1.2570 7 6 3.6469 2.0692 2.3034 8 7 4.0561 1.7379 3.5074 9 14 2.3353 3.3822 2.0909 10 1 0.9913 2.7672 2.2348 11 1 2.5128 4.4314 3.1266 12 1 2.4589 3.9918 0.7425 13 6 4.1793 1.4425 -1.1663 14 8 3.5767 1.3522 -2.2150 15 6 5.6822 1.5544 -1.1680 16 1 5.9945 2.2654 -0.4030 17 6 6.2960 0.1845 -0.8721 18 7 6.1369 2.0208 -2.4847 19 6 7.5289 2.4880 -2.4260 20 6 7.9379 3.0378 -3.7947 21 7 7.7807 1.9860 -4.8089 22 6 8.2355 2.4523 -6.1256 23 6 6.3887 1.5187 -4.8676 24 6 5.9798 0.9690 -3.4990 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.6767 2.1749 4.2859 33 1 5.9803 -0.5274 -1.6348 34 1 7.3830 0.2647 -0.8777 35 1 5.9620 -0.1596 0.1066 36 1 8.1808 1.6563 -2.1587 37 1 7.6175 3.2748 -1.6769 38 1 8.9792 3.3583 -3.7614 39 1 7.3037 3.8867 -4.0498 40 1 9.2882 2.7291 -6.0694 41 1 7.6475 3.3192 -6.4270 42 1 8.1077 1.6547 -6.8575 43 1 5.7368 2.3505 -5.1349 44 1 6.3005 0.7319 -5.6167 45 1 6.6140 0.1200 -3.2439 46 1 4.9386 0.6482 -3.5319 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330867486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:01 Heat of formation + Delta-G solvation = -24.221459 kcal Electronic energy + Delta-G solvation = -24276.463177 eV Core-core repulsion = 21008.152829 eV Total energy + Delta-G solvation = -3268.310347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32120 -39.83078 -37.38359 -36.44419 -34.69884 -33.58463 -32.00899 -31.72232 -28.37802 -27.69363 -26.96233 -25.23368 -24.56737 -23.58941 -22.70485 -20.83644 -20.29861 -18.91995 -18.09365 -17.45688 -16.71379 -16.26087 -16.05641 -15.91483 -15.85651 -15.61810 -15.50027 -15.21292 -14.73365 -14.60070 -14.31043 -14.00130 -13.61603 -13.42789 -13.39204 -13.19618 -13.09734 -12.73187 -12.70271 -12.55311 -12.49491 -12.39635 -12.09004 -11.93542 -11.81651 -11.79447 -11.66415 -11.47972 -10.92783 -10.23036 -9.77627 -9.37262 -9.10665 -8.50267 -6.05010 1.16401 1.31130 1.40326 1.89279 2.16252 2.48243 2.92469 3.01034 3.20849 3.87696 3.90736 4.02458 4.12024 4.14463 4.24304 4.26879 4.32150 4.35136 4.36935 4.42266 4.50638 4.61551 4.63846 4.65010 4.70341 4.82859 4.86548 4.89858 4.92068 4.97461 5.01213 5.02978 5.08066 5.14267 5.20617 5.22038 5.30606 5.48459 5.91967 5.99737 6.09082 6.21712 6.28446 6.30814 6.97825 7.46510 7.83306 8.63299 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.005166 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.214858 B = 5419.228495 C = 6008.579866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.099 3.901 4 N -0.475 5.475 5 C -0.340 4.340 6 H 0.100 0.900 7 C 0.031 3.969 8 N -0.893 5.893 9 Si 0.926 3.074 10 H -0.259 1.259 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.484 3.516 14 O -0.602 6.602 15 C 0.088 3.912 16 H 0.095 0.905 17 C -0.162 4.162 18 N -0.534 5.534 19 C 0.054 3.946 20 C 0.064 3.936 21 N -0.553 5.553 22 C 0.026 3.974 23 C 0.067 3.933 24 C 0.054 3.946 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.279 0.721 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.030 0.970 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.076 0.924 43 H 0.025 0.975 44 H 0.090 0.910 45 H 0.039 0.961 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 0.207 -11.580 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.023 4.023 4 N -0.195 5.195 5 C -0.467 4.467 6 H 0.117 0.883 7 C -0.173 4.173 8 N -0.530 5.530 9 Si 0.754 3.246 10 H -0.186 1.186 11 H -0.216 1.216 12 H -0.200 1.200 13 C 0.274 3.726 14 O -0.488 6.488 15 C -0.023 4.023 16 H 0.113 0.887 17 C -0.221 4.221 18 N -0.259 5.259 19 C -0.074 4.074 20 C -0.064 4.064 21 N -0.279 5.279 22 C -0.121 4.121 23 C -0.061 4.061 24 C -0.074 4.074 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.241 0.199 -11.880 12.616 hybrid contribution -0.685 0.697 0.598 1.146 sum 3.555 0.896 -11.283 11.863 Atomic orbital electron populations 1.21688 0.93458 1.02902 1.01930 1.21673 0.97308 0.95804 1.01425 1.21743 0.82096 0.98349 1.00143 1.43920 1.04528 1.65497 1.05604 1.19205 1.06161 1.35563 0.85756 0.88302 1.25727 0.99165 0.97890 0.94568 1.69801 1.44406 1.40400 0.98403 0.86176 0.80405 0.80276 0.77732 1.18581 1.21621 1.20018 1.20612 0.90367 0.78997 0.82669 1.90436 1.70897 1.55583 1.31855 1.21214 0.91610 0.97760 0.91739 0.88737 1.22181 1.01317 0.96328 1.02251 1.62012 1.21466 1.37687 1.04722 1.22266 0.87434 0.99836 0.97883 1.22150 1.01554 0.92169 0.90570 1.62224 1.20894 1.37103 1.07629 1.22398 1.01039 0.99347 0.89352 1.22079 0.88021 0.99318 0.96702 1.22308 1.01608 0.92504 0.90939 0.92033 0.90619 0.92855 0.92686 0.92646 0.92801 0.91704 0.91120 0.92491 0.90532 0.92039 0.93628 0.89985 0.88070 0.95120 0.89955 0.95849 0.90540 0.95655 0.89173 0.94252 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.91 71.98 0.71 -3.60 16 2 C -0.12 -4.80 6.26 30.60 0.19 -4.61 16 3 C 0.10 4.41 4.16 86.38 0.36 4.77 16 4 N -0.47 -22.79 2.30 -635.55 -1.46 -24.25 16 5 C -0.34 -17.33 8.72 84.04 0.73 -16.60 16 6 H 0.10 5.21 5.48 -2.91 -0.02 5.19 16 7 C 0.03 1.59 5.36 84.93 0.45 2.05 16 8 N -0.89 -48.46 13.96 21.66 0.30 -48.16 16 9 Si 0.93 42.08 24.71 68.60 1.70 43.77 16 10 H -0.26 -11.04 6.73 99.48 0.67 -10.37 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.89 7.06 99.48 0.70 -12.19 16 13 C 0.48 22.47 6.81 87.66 0.60 23.06 16 14 O -0.60 -29.66 13.75 -3.07 -0.04 -29.70 16 15 C 0.09 3.50 1.90 44.17 0.08 3.58 16 16 H 0.09 3.94 7.21 -2.39 -0.02 3.92 16 17 C -0.16 -5.74 8.09 71.98 0.58 -5.16 16 18 N -0.53 -19.03 4.47 -874.86 -3.91 -22.94 16 19 C 0.05 1.54 5.39 86.31 0.47 2.00 16 20 C 0.06 1.56 5.62 86.31 0.49 2.05 16 21 N -0.55 -13.61 4.97 -921.94 -4.58 -18.19 16 22 C 0.03 0.48 9.60 127.69 1.23 1.71 16 23 C 0.07 1.88 5.62 86.31 0.49 2.37 16 24 C 0.05 1.82 4.47 86.31 0.39 2.21 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 2.44 2.35 -2.39 -0.01 2.43 16 31 H 0.06 2.89 7.50 -2.39 -0.02 2.87 16 32 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.06 1.99 6.40 -2.39 -0.02 1.98 16 34 H 0.08 2.35 6.97 -2.39 -0.02 2.33 16 35 H 0.06 2.40 6.14 -2.39 -0.01 2.38 16 36 H 0.05 1.27 6.98 -2.39 -0.02 1.26 16 37 H 0.08 2.26 8.03 -2.39 -0.02 2.24 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 39 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.08 1.24 8.13 -2.38 -0.02 1.22 16 43 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.09 2.19 8.13 -2.39 -0.02 2.17 16 45 H 0.04 1.28 6.42 -2.39 -0.02 1.27 16 46 H 0.08 3.13 5.69 -2.39 -0.01 3.12 16 Total: -1.00 -59.50 342.12 -0.32 -59.82 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.91 Total: 25.82 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 6.76 Total: 13.82 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -9.65 Total: -113.53 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.04 Total: -29.70 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.70 Total: 43.77 kcal Total: -59.50 -0.32 -59.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330867486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.602 kcal (2) G-P(sol) polarization free energy of solvation -59.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds