Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 N 1.46505 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99833 * 266.22405 * 4 3 2 6 6 H 1.07995 * 120.00233 * 145.96062 * 5 4 3 7 7 C 1.38818 * 119.99994 * 325.96283 * 5 4 3 8 8 N 1.31628 * 119.99740 * 337.81080 * 7 5 4 9 9 Si 1.86797 * 120.00098 * 157.81771 * 7 5 4 10 10 H 1.48504 * 109.47218 * 89.99623 * 9 7 5 11 11 H 1.48496 * 109.46968 * 209.99661 * 9 7 5 12 12 H 1.48493 * 109.47052 * 329.99776 * 9 7 5 13 13 C 1.46499 * 120.00103 * 85.95406 * 4 3 2 14 14 C 1.52988 * 109.47512 * 89.99777 * 13 4 3 15 15 C 1.50703 * 109.47173 * 179.97438 * 14 13 4 16 16 O 1.21279 * 119.99938 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99867 * 179.97438 * 15 14 13 18 18 C 1.47081 * 120.88163 * 359.72575 * 17 15 14 19 19 C 1.53693 * 108.27533 * 128.75470 * 18 17 15 20 20 N 1.46901 * 109.25811 * 54.08089 * 19 18 17 21 21 C 1.46899 * 110.99729 * 172.60928 * 20 19 18 22 22 C 1.46897 * 111.27048 * 296.75398 * 20 19 18 23 23 C 1.47075 * 120.88022 * 180.02562 * 17 15 14 24 24 H 1.09001 * 109.46956 * 300.00119 * 1 2 3 25 25 H 1.08999 * 109.46979 * 60.00120 * 1 2 3 26 26 H 1.09004 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46956 * 239.99881 * 2 1 3 28 28 H 1.08999 * 109.46979 * 119.99880 * 2 1 3 29 29 H 1.08998 * 109.47315 * 59.99563 * 3 2 1 30 30 H 1.09008 * 109.46887 * 299.99932 * 3 2 1 31 31 H 0.96999 * 119.99686 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47028 * 210.00002 * 13 4 3 33 33 H 1.09004 * 109.46743 * 329.99537 * 13 4 3 34 34 H 1.09006 * 109.47175 * 299.99786 * 14 13 4 35 35 H 1.09004 * 109.47312 * 60.00109 * 14 13 4 36 36 H 1.09001 * 109.62936 * 248.51961 * 18 17 15 37 37 H 1.09000 * 109.62956 * 9.10174 * 18 17 15 38 38 H 1.09002 * 109.64848 * 294.07342 * 19 18 17 39 39 H 1.09001 * 109.44456 * 173.96175 * 19 18 17 40 40 H 1.09007 * 109.46840 * 184.30288 * 21 20 19 41 41 H 1.09002 * 109.47469 * 304.29669 * 21 20 19 42 42 H 1.09001 * 109.47582 * 64.30353 * 21 20 19 43 43 H 1.09005 * 109.49584 * 303.14819 * 22 20 19 44 44 H 1.08998 * 109.51482 * 183.07739 * 22 20 19 45 45 H 1.09001 * 109.62900 * 350.90111 * 23 17 15 46 46 H 1.09003 * 109.63140 * 111.28595 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5203 1.1824 6 1 5.1314 1.0032 1.2965 7 6 3.6749 2.2640 2.2353 8 7 2.8032 3.2218 1.9998 9 14 4.2187 1.9057 3.9860 10 1 5.4098 2.7300 4.3130 11 1 3.1158 2.2355 4.9242 12 1 4.5627 0.4667 4.1128 13 6 4.2370 1.3531 -1.2665 14 6 4.4918 2.7607 -1.8088 15 6 5.2454 2.6687 -3.1107 16 8 5.5483 1.5840 -3.5606 17 7 5.5817 3.7919 -3.7754 18 6 5.2179 5.1171 -3.2511 19 6 6.4827 5.9899 -3.2276 20 7 7.0913 5.9972 -4.5646 21 6 8.2015 6.9568 -4.6323 22 6 7.5334 4.6522 -4.9562 23 6 6.3165 3.7247 -5.0477 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 2.4435 3.7417 2.7354 32 1 5.1895 0.8497 -1.1007 33 1 3.6476 0.7869 -1.9878 34 1 3.5393 3.2641 -1.9747 35 1 5.0812 3.3268 -1.0875 36 1 4.4669 5.5727 -3.8964 37 1 4.8229 5.0151 -2.2403 38 1 7.1935 5.5860 -2.5066 39 1 6.2158 7.0080 -2.9438 40 1 8.5844 6.9979 -5.6521 41 1 7.8467 7.9444 -4.3375 42 1 8.9971 6.6403 -3.9579 43 1 8.2296 4.2668 -4.2111 44 1 8.0283 4.6997 -5.9262 45 1 6.6482 2.7017 -5.2253 46 1 5.6678 4.0460 -5.8626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338308871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = -14.288731 kcal Electronic energy + Delta-G solvation = -23306.761154 eV Core-core repulsion = 20038.881522 eV Total energy + Delta-G solvation = -3267.879632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.96825 -37.93672 -36.12412 -34.46001 -32.58635 -32.03767 -31.18326 -29.36527 -28.29423 -25.53092 -24.84075 -24.11253 -23.34956 -21.61880 -20.83838 -19.68352 -18.53164 -17.02910 -16.50510 -15.74422 -15.35983 -15.28381 -14.96919 -14.95209 -14.61952 -14.08635 -13.94697 -13.53635 -13.22475 -12.96522 -12.82566 -12.42742 -12.39092 -11.99905 -11.91576 -11.69853 -11.41306 -11.31040 -11.26389 -11.17835 -10.89059 -10.76222 -10.75109 -10.29484 -10.28208 -9.84507 -9.77193 -9.43887 -9.30880 -8.77408 -8.46549 -8.34298 -6.60556 -5.78353 -3.31205 3.05859 3.16735 3.35725 3.43683 3.48369 3.75083 4.48594 4.71133 4.83531 4.87457 5.06667 5.16474 5.23401 5.31663 5.36112 5.39685 5.43112 5.62158 5.62480 5.65893 5.76182 5.82581 5.90174 5.96374 5.98025 6.01611 6.11826 6.29279 6.52841 6.58355 6.63263 6.66243 6.77454 6.81706 6.85269 6.90216 6.96598 7.10815 7.33093 7.65600 7.78828 7.85277 8.50543 8.57275 9.20919 9.84646 10.41152 11.21832 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.004281 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.234946 B = 6538.356698 C = 7468.637313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.144 3.856 4 N -0.585 5.585 5 C -0.255 4.255 6 H 0.061 0.939 7 C 0.009 3.991 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.166 3.834 14 C -0.153 4.153 15 C 0.519 3.481 16 O -0.549 6.549 17 N -0.624 5.624 18 C 0.113 3.887 19 C 0.039 3.961 20 N -0.544 5.544 21 C 0.025 3.975 22 C 0.042 3.958 23 C 0.115 3.885 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.018 0.982 31 H 0.254 0.746 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.038 0.962 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 6.531 -11.736 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.018 3.982 4 N -0.305 5.305 5 C -0.384 4.384 6 H 0.079 0.921 7 C -0.190 4.190 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.038 3.962 14 C -0.195 4.195 15 C 0.309 3.691 16 O -0.426 6.426 17 N -0.359 5.359 18 C -0.011 4.011 19 C -0.089 4.089 20 N -0.269 5.269 21 C -0.123 4.123 22 C -0.087 4.087 23 C -0.008 4.008 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.574 6.187 -12.162 14.391 hybrid contribution 0.922 -0.067 1.470 1.736 sum 5.496 6.120 -10.692 13.490 Atomic orbital electron populations 1.21693 0.97577 0.99903 1.01040 1.22104 0.93648 1.01779 1.00650 1.21021 0.83306 0.92226 1.01665 1.43974 1.01133 1.84468 1.00882 1.19102 1.05805 1.23999 0.89535 0.92135 1.25052 0.99806 0.95204 0.98978 1.69977 1.33340 1.19328 1.30618 0.86432 0.77742 0.78370 0.85062 1.21410 1.21516 1.20387 1.20652 0.96386 0.91208 0.87954 1.22492 0.99895 1.05055 0.92078 1.21505 0.78404 0.82881 0.86329 1.90621 1.55297 1.27430 1.69260 1.48355 1.57656 1.06582 1.23313 1.21923 0.96078 0.82071 1.01013 1.22607 0.96470 1.00722 0.89131 1.61958 1.30559 1.07291 1.27098 1.22359 0.92264 0.96184 1.01470 1.22507 0.96714 0.88553 1.00922 1.21588 0.92637 1.00313 0.86245 0.93108 0.93665 0.94198 0.94080 0.92555 0.88237 0.96354 0.93643 0.93312 0.94032 0.89829 0.88860 0.90817 0.88271 0.94055 0.89499 0.91364 0.91235 0.95662 0.94350 0.89840 0.88857 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.11 16 2 C -0.14 -2.92 6.26 -26.73 -0.17 -3.09 16 3 C 0.14 3.36 5.25 -4.04 -0.02 3.34 16 4 N -0.59 -14.46 2.45 -173.24 -0.42 -14.88 16 5 C -0.25 -6.85 9.49 -15.06 -0.14 -6.99 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 7 C 0.01 0.24 4.94 -17.42 -0.09 0.16 16 8 N -0.89 -24.57 11.32 55.49 0.63 -23.94 16 9 Si 0.89 21.24 29.61 -169.99 -5.03 16.21 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.17 3.66 4.98 -4.05 -0.02 3.64 16 14 C -0.15 -2.95 4.39 -27.89 -0.12 -3.07 16 15 C 0.52 9.41 7.71 -10.98 -0.08 9.33 16 16 O -0.55 -11.49 15.43 5.56 0.09 -11.41 16 17 N -0.62 -9.21 3.00 -172.16 -0.52 -9.72 16 18 C 0.11 1.41 6.53 -3.36 -0.02 1.38 16 19 C 0.04 0.44 5.64 -3.46 -0.02 0.42 16 20 N -0.54 -5.81 4.88 -242.28 -1.18 -6.99 16 21 C 0.03 0.21 9.58 60.06 0.58 0.79 16 22 C 0.04 0.45 5.62 -3.68 -0.02 0.43 16 23 C 0.12 1.47 6.60 -3.58 -0.02 1.44 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.10 2.61 5.33 -51.93 -0.28 2.33 16 30 H 0.02 0.41 8.10 -51.92 -0.42 -0.01 16 31 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.05 1.12 7.99 -51.93 -0.42 0.71 16 33 H 0.04 0.90 8.03 -51.93 -0.42 0.49 16 34 H 0.08 1.59 7.99 -51.93 -0.41 1.18 16 35 H 0.09 1.89 7.67 -51.93 -0.40 1.50 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.31 6.02 -51.93 -0.31 1.00 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.52 8.08 -51.93 -0.42 0.11 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 45 H 0.09 1.29 7.06 -51.93 -0.37 0.92 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -29.87 363.15 -9.24 -39.11 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.48 Total: 0.48 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 0.21 Total: 5.68 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -1.50 Total: -55.54 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.87 -9.24 -39.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338308871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.818 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds