Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 N 1.46505 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99833 * 266.22405 * 4 3 2 6 6 H 1.07995 * 120.00233 * 145.96062 * 5 4 3 7 7 C 1.38818 * 119.99994 * 325.96283 * 5 4 3 8 8 N 1.31628 * 119.99740 * 337.81080 * 7 5 4 9 9 Si 1.86797 * 120.00098 * 157.81771 * 7 5 4 10 10 H 1.48504 * 109.47218 * 89.99623 * 9 7 5 11 11 H 1.48496 * 109.46968 * 209.99661 * 9 7 5 12 12 H 1.48493 * 109.47052 * 329.99776 * 9 7 5 13 13 C 1.46499 * 120.00103 * 85.95406 * 4 3 2 14 14 C 1.52988 * 109.47512 * 89.99777 * 13 4 3 15 15 C 1.50703 * 109.47173 * 179.97438 * 14 13 4 16 16 O 1.21279 * 119.99938 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99867 * 179.97438 * 15 14 13 18 18 C 1.47081 * 120.88163 * 359.72575 * 17 15 14 19 19 C 1.53693 * 108.27533 * 128.75470 * 18 17 15 20 20 N 1.46901 * 109.25811 * 54.08089 * 19 18 17 21 21 C 1.46899 * 110.99729 * 172.60928 * 20 19 18 22 22 C 1.46897 * 111.27048 * 296.75398 * 20 19 18 23 23 C 1.47075 * 120.88022 * 180.02562 * 17 15 14 24 24 H 1.09001 * 109.46956 * 300.00119 * 1 2 3 25 25 H 1.08999 * 109.46979 * 60.00120 * 1 2 3 26 26 H 1.09004 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46956 * 239.99881 * 2 1 3 28 28 H 1.08999 * 109.46979 * 119.99880 * 2 1 3 29 29 H 1.08998 * 109.47315 * 59.99563 * 3 2 1 30 30 H 1.09008 * 109.46887 * 299.99932 * 3 2 1 31 31 H 0.96999 * 119.99686 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47028 * 210.00002 * 13 4 3 33 33 H 1.09004 * 109.46743 * 329.99537 * 13 4 3 34 34 H 1.09006 * 109.47175 * 299.99786 * 14 13 4 35 35 H 1.09004 * 109.47312 * 60.00109 * 14 13 4 36 36 H 1.09001 * 109.62936 * 248.51961 * 18 17 15 37 37 H 1.09000 * 109.62956 * 9.10174 * 18 17 15 38 38 H 1.09002 * 109.64848 * 294.07342 * 19 18 17 39 39 H 1.09001 * 109.44456 * 173.96175 * 19 18 17 40 40 H 1.09007 * 109.46840 * 184.30288 * 21 20 19 41 41 H 1.09002 * 109.47469 * 304.29669 * 21 20 19 42 42 H 1.09001 * 109.47582 * 64.30353 * 21 20 19 43 43 H 1.09005 * 109.49584 * 303.14819 * 22 20 19 44 44 H 1.08998 * 109.51482 * 183.07739 * 22 20 19 45 45 H 1.09001 * 109.62900 * 350.90111 * 23 17 15 46 46 H 1.09003 * 109.63140 * 111.28595 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5203 1.1824 6 1 5.1314 1.0032 1.2965 7 6 3.6749 2.2640 2.2353 8 7 2.8032 3.2218 1.9998 9 14 4.2187 1.9057 3.9860 10 1 5.4098 2.7300 4.3130 11 1 3.1158 2.2355 4.9242 12 1 4.5627 0.4667 4.1128 13 6 4.2370 1.3531 -1.2665 14 6 4.4918 2.7607 -1.8088 15 6 5.2454 2.6687 -3.1107 16 8 5.5483 1.5840 -3.5606 17 7 5.5817 3.7919 -3.7754 18 6 5.2179 5.1171 -3.2511 19 6 6.4827 5.9899 -3.2276 20 7 7.0913 5.9972 -4.5646 21 6 8.2015 6.9568 -4.6323 22 6 7.5334 4.6522 -4.9562 23 6 6.3165 3.7247 -5.0477 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 2.4435 3.7417 2.7354 32 1 5.1895 0.8497 -1.1007 33 1 3.6476 0.7869 -1.9878 34 1 3.5393 3.2641 -1.9747 35 1 5.0812 3.3268 -1.0875 36 1 4.4669 5.5727 -3.8964 37 1 4.8229 5.0151 -2.2403 38 1 7.1935 5.5860 -2.5066 39 1 6.2158 7.0080 -2.9438 40 1 8.5844 6.9979 -5.6521 41 1 7.8467 7.9444 -4.3375 42 1 8.9971 6.6403 -3.9579 43 1 8.2296 4.2668 -4.2111 44 1 8.0283 4.6997 -5.9262 45 1 6.6482 2.7017 -5.2253 46 1 5.6678 4.0460 -5.8626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338308871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = -32.320556 kcal Electronic energy + Delta-G solvation = -23307.543072 eV Core-core repulsion = 20038.881522 eV Total energy + Delta-G solvation = -3268.661551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24017 -39.10965 -37.95684 -35.60772 -34.22248 -33.89430 -32.34923 -30.91847 -29.40520 -27.37145 -26.24612 -25.15650 -24.57265 -23.18425 -22.13268 -21.37969 -19.81086 -18.75216 -18.12910 -16.98932 -16.78259 -16.69718 -16.18741 -15.92477 -15.84390 -15.68248 -15.55784 -14.96556 -14.67172 -14.60569 -13.97737 -13.80928 -13.72833 -13.37480 -13.14289 -13.02833 -12.78841 -12.77041 -12.59064 -12.43784 -12.32208 -12.26304 -12.11327 -12.09445 -11.99602 -11.69989 -11.60364 -11.26291 -10.80677 -10.49221 -9.84895 -9.33545 -8.60466 -7.82055 -5.39043 1.45580 1.49488 1.58505 1.59607 1.95870 2.52319 2.90514 3.25117 3.46164 3.81311 3.92347 3.96709 4.12099 4.21180 4.24965 4.29522 4.34790 4.37232 4.50928 4.53573 4.62768 4.64450 4.70867 4.72042 4.76467 4.81724 4.84487 4.92480 5.01280 5.03122 5.09033 5.13738 5.23422 5.31960 5.39170 5.50176 5.56892 5.69131 5.91680 5.94624 5.96635 6.34492 6.47565 7.12982 7.18763 7.86702 8.39074 9.14891 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.004281 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.234946 B = 6538.356698 C = 7468.637313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.599 5.599 5 C -0.269 4.269 6 H 0.050 0.950 7 C -0.028 4.028 8 N -0.909 5.909 9 Si 0.951 3.049 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.169 3.831 14 C -0.135 4.135 15 C 0.520 3.480 16 O -0.582 6.582 17 N -0.617 5.617 18 C 0.109 3.891 19 C 0.043 3.957 20 N -0.548 5.548 21 C 0.025 3.975 22 C 0.048 3.952 23 C 0.113 3.887 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.253 0.747 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 7.603 -12.694 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.319 5.319 5 C -0.400 4.400 6 H 0.067 0.933 7 C -0.226 4.226 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.042 3.958 14 C -0.178 4.178 15 C 0.310 3.690 16 O -0.462 6.462 17 N -0.350 5.350 18 C -0.013 4.013 19 C -0.085 4.085 20 N -0.273 5.273 21 C -0.122 4.122 22 C -0.081 4.081 23 C -0.009 4.009 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.572 7.300 -13.147 15.718 hybrid contribution 0.952 -0.358 1.693 1.975 sum 5.524 6.941 -11.454 14.488 Atomic orbital electron populations 1.21624 0.94673 1.01637 1.01507 1.21968 0.96179 0.99466 0.99800 1.20970 0.82663 0.93790 1.00560 1.44120 1.01765 1.84911 1.01097 1.19206 1.05842 1.24019 0.90887 0.93271 1.25617 1.00135 0.95044 1.01772 1.70078 1.34123 1.19835 1.31291 0.85548 0.77351 0.77989 0.81165 1.20986 1.21355 1.20403 1.20554 0.95297 0.92717 0.87211 1.22129 1.00148 1.02806 0.92670 1.21124 0.78450 0.83369 0.86055 1.90606 1.56846 1.28797 1.69999 1.48362 1.56600 1.06476 1.23610 1.22087 0.97406 0.81108 1.00720 1.22573 0.95336 1.01318 0.89313 1.61998 1.31564 1.07326 1.26398 1.22434 0.91438 0.95967 1.02400 1.22468 0.95404 0.88327 1.01896 1.21756 0.93504 1.00340 0.85342 0.93521 0.92322 0.91835 0.93739 0.94512 0.90793 0.95818 0.93765 0.94986 0.93853 0.89441 0.90093 0.89150 0.89324 0.95608 0.87384 0.89881 0.90088 0.96001 0.95841 0.87255 0.90176 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.91 71.98 0.71 -3.75 16 2 C -0.13 -5.48 6.26 30.59 0.19 -5.29 16 3 C 0.15 6.87 5.25 86.38 0.45 7.33 16 4 N -0.60 -30.20 2.45 -702.02 -1.72 -31.92 16 5 C -0.27 -14.79 9.49 84.04 0.80 -13.99 16 6 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 7 C -0.03 -1.51 4.94 84.86 0.42 -1.10 16 8 N -0.91 -50.70 11.32 21.65 0.25 -50.45 16 9 Si 0.95 43.96 29.61 68.60 2.03 45.99 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.17 7.67 4.98 86.38 0.43 8.10 16 14 C -0.14 -5.32 4.39 29.85 0.13 -5.19 16 15 C 0.52 19.06 7.71 87.66 0.68 19.74 16 16 O -0.58 -24.79 15.43 -3.03 -0.05 -24.84 16 17 N -0.62 -17.82 3.00 -816.97 -2.45 -20.27 16 18 C 0.11 2.60 6.53 86.50 0.57 3.16 16 19 C 0.04 0.89 5.64 86.54 0.49 1.38 16 20 N -0.55 -10.36 4.88 -920.43 -4.49 -14.86 16 21 C 0.03 0.36 9.58 127.69 1.22 1.58 16 22 C 0.05 0.95 5.62 86.40 0.49 1.43 16 23 C 0.11 2.73 6.60 86.36 0.57 3.30 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 3.93 5.33 -2.39 -0.01 3.92 16 30 H 0.02 1.06 8.10 -2.38 -0.02 1.04 16 31 H 0.25 13.62 8.31 -92.71 -0.77 12.84 16 32 H 0.03 1.53 7.99 -2.39 -0.02 1.51 16 33 H 0.04 1.92 8.03 -2.39 -0.02 1.90 16 34 H 0.09 3.35 7.99 -2.38 -0.02 3.33 16 35 H 0.08 3.39 7.67 -2.39 -0.02 3.37 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 37 H 0.09 2.31 6.02 -2.39 -0.01 2.29 16 38 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16 40 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 42 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.11 1.63 8.11 -2.39 -0.02 1.61 16 45 H 0.08 2.18 7.06 -2.39 -0.02 2.16 16 46 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -64.11 363.15 1.62 -62.49 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.92 Total: 17.15 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 7.14 Total: 16.71 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -8.42 Total: -117.50 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -64.11 1.62 -62.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338308871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.173 kcal (2) G-P(sol) polarization free energy of solvation -64.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds