Wall clock time and date at job start Wed Apr 15 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46935 * 2 1 4 4 N 1.46899 * 109.46821 * 180.02562 * 3 2 1 5 5 C 1.47847 * 110.99950 * 285.00813 * 4 3 2 6 6 C 1.54911 * 104.79511 * 213.63726 * 5 4 3 7 7 C 1.55138 * 101.65156 * 37.07674 * 6 5 4 8 8 C 1.47452 * 111.00071 * 164.17014 * 4 3 2 9 9 H 1.09000 * 109.89029 * 242.66563 * 8 4 3 10 10 C 1.50704 * 109.88363 * 3.68680 * 8 4 3 11 11 O 1.21284 * 119.99929 * 50.29943 * 10 8 4 12 12 N 1.34781 * 119.99930 * 230.29100 * 10 8 4 13 13 C 1.46498 * 119.99819 * 180.02562 * 12 10 8 14 14 H 1.08998 * 109.47021 * 35.00269 * 13 12 10 15 15 C 1.53004 * 109.47026 * 275.00188 * 13 12 10 16 16 C 1.53002 * 109.46995 * 155.00445 * 13 12 10 17 17 N 1.46503 * 109.47056 * 304.99780 * 16 13 12 18 18 C 1.36928 * 120.00014 * 179.97438 * 17 16 13 19 19 H 1.08003 * 120.00455 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00042 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46868 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47190 * 120.00086 * 22 20 18 25 25 H 1.48504 * 109.47126 * 240.00137 * 22 20 18 26 26 H 1.09002 * 109.46954 * 60.00146 * 1 2 3 27 27 H 1.09003 * 109.46763 * 300.00132 * 1 2 3 28 28 H 1.08996 * 109.46694 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47409 * 119.99893 * 2 1 3 30 30 H 1.08992 * 109.47233 * 240.00075 * 2 1 3 31 31 H 1.09002 * 109.47181 * 299.99715 * 3 2 1 32 32 H 1.08999 * 109.47424 * 59.99800 * 3 2 1 33 33 H 1.08994 * 110.37454 * 332.47036 * 5 4 3 34 34 H 1.09004 * 110.36443 * 94.81229 * 5 4 3 35 35 H 1.08990 * 110.99037 * 278.98079 * 6 5 4 36 36 H 1.09002 * 110.98469 * 155.16473 * 6 5 4 37 37 H 1.09001 * 110.69831 * 205.96232 * 7 6 5 38 38 H 1.08995 * 110.86051 * 82.80060 * 7 6 5 39 39 H 0.96994 * 119.99896 * 0.02562 * 12 10 8 40 40 H 1.08998 * 109.47287 * 299.99918 * 15 13 12 41 41 H 1.08997 * 109.47035 * 60.00656 * 15 13 12 42 42 H 1.09002 * 109.46616 * 179.97438 * 15 13 12 43 43 H 1.08998 * 109.47245 * 64.99782 * 16 13 12 44 44 H 1.09000 * 109.47351 * 184.99930 * 16 13 12 45 45 H 0.97008 * 119.99603 * 0.02562 * 17 16 13 46 46 H 0.97000 * 119.99989 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0394 1.0849 1.3323 6 6 5.3454 1.9063 1.4718 7 6 4.9561 3.2350 0.7719 8 6 4.0373 2.7669 -0.3761 9 1 4.6092 2.6895 -1.3008 10 6 2.9006 3.7398 -0.5566 11 8 2.0534 3.8491 0.3044 12 7 2.8256 4.4886 -1.6748 13 6 1.7209 5.4348 -1.8500 14 1 1.4541 5.8645 -0.8845 15 6 0.5109 4.7034 -2.4347 16 6 2.1519 6.5510 -2.8035 17 7 3.3803 7.1733 -2.3035 18 6 3.9573 8.2033 -2.9970 19 1 3.5068 8.5573 -3.9125 20 6 5.1216 8.7926 -2.5235 21 7 5.6710 8.3610 -1.4080 22 14 5.9085 10.1983 -3.4693 23 1 5.1013 10.4931 -4.6803 24 1 5.9644 11.4054 -2.6063 25 1 7.2851 9.8140 -3.8727 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.3298 1.3651 2.1107 34 1 4.2553 0.0175 1.3807 35 1 6.1705 1.4187 0.9529 36 1 5.5905 2.0746 2.5205 37 1 5.8402 3.7363 0.3780 38 1 4.4158 3.8899 1.4554 39 1 3.5030 4.4011 -2.3634 40 1 0.7777 4.2736 -3.4002 41 1 0.2039 3.9083 -1.7553 42 1 -0.3111 5.4073 -2.5645 43 1 2.3334 6.1331 -3.7937 44 1 1.3635 7.3012 -2.8648 45 1 3.7852 6.8552 -1.4813 46 1 6.4844 8.7730 -1.0769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754228936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:37 Heat of formation + Delta-G solvation = -28.259834 kcal Electronic energy + Delta-G solvation = -23667.926357 eV Core-core repulsion = 20399.440892 eV Total energy + Delta-G solvation = -3268.485464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60313 -37.98323 -35.96997 -34.53046 -33.64327 -31.51555 -30.76419 -30.16048 -28.88173 -25.70839 -25.46765 -23.12324 -22.35252 -21.89532 -20.78106 -20.33535 -19.70660 -17.32157 -16.96085 -16.24214 -15.57544 -15.36266 -15.06133 -14.85493 -14.43466 -13.75900 -13.74754 -13.53795 -13.30303 -13.18677 -12.77145 -12.37912 -12.28524 -12.25626 -12.06626 -11.92340 -11.63785 -11.50110 -11.29592 -11.13706 -10.94889 -10.87233 -10.81733 -10.73177 -10.55317 -10.45762 -10.04778 -9.77409 -9.69262 -8.95602 -8.71084 -8.20569 -6.98883 -5.81144 -3.10830 2.80103 3.40030 3.45847 3.47625 3.48397 3.98851 4.54482 4.56911 4.68702 4.91038 5.00965 5.10476 5.14891 5.28166 5.34514 5.38780 5.45887 5.49483 5.51855 5.59053 5.63623 5.71974 5.76227 5.81961 5.85422 5.91493 5.98960 6.02956 6.05881 6.07615 6.16366 6.18007 6.23546 6.30338 6.37909 6.46976 6.68654 6.87675 6.94237 7.01424 7.65896 7.85647 8.36695 8.51611 9.48763 10.04451 10.40083 11.41243 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.004323 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.184410 B = 6475.454184 C = 7586.065524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.043 3.957 4 N -0.508 5.508 5 C 0.041 3.959 6 C -0.126 4.126 7 C -0.127 4.127 8 C 0.055 3.945 9 H 0.101 0.899 10 C 0.507 3.493 11 O -0.549 6.549 12 N -0.705 5.705 13 C 0.132 3.868 14 H 0.085 0.915 15 C -0.156 4.156 16 C 0.144 3.856 17 N -0.732 5.732 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.405 0.595 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.033 0.967 45 H 0.386 0.614 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.661 -16.749 2.852 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.085 4.085 4 N -0.233 5.233 5 C -0.087 4.087 6 C -0.164 4.164 7 C -0.166 4.166 8 C -0.057 4.057 9 H 0.119 0.881 10 C 0.292 3.708 11 O -0.428 6.428 12 N -0.356 5.356 13 C 0.027 3.973 14 H 0.103 0.897 15 C -0.215 4.215 16 C 0.016 3.984 17 N -0.376 5.376 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.240 0.760 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.051 0.949 45 H 0.220 0.780 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.100 -16.888 2.952 18.197 hybrid contribution 0.673 1.389 -0.067 1.545 sum -5.428 -15.499 2.885 16.674 Atomic orbital electron populations 1.21712 0.95836 1.01235 1.01929 1.21521 0.95244 0.96900 1.02027 1.22709 0.86783 0.96306 1.02655 1.63991 1.08751 1.23496 1.27030 1.23130 0.95752 1.00108 0.89699 1.22696 0.97573 0.95253 1.00913 1.22717 0.99508 0.97944 0.96439 1.22575 0.94375 0.87658 1.01064 0.88106 1.20895 0.86771 0.81391 0.81736 1.90660 1.41934 1.67764 1.42417 1.46112 1.28442 1.40076 1.20938 1.21238 0.86102 0.89227 1.00685 0.89677 1.22093 0.97821 1.00783 1.00823 1.20981 0.90623 0.92200 0.94588 1.42360 1.25907 1.40267 1.29115 1.19267 1.04952 1.08657 1.04494 0.91090 1.24748 0.98349 1.00049 0.97644 1.69678 1.21925 1.44177 1.22115 0.86119 0.79082 0.82055 0.78922 1.20552 1.21868 1.21835 0.92790 0.92828 0.92848 0.92425 0.91707 0.91300 0.91613 0.93208 0.90201 0.90493 0.90617 0.89559 0.90425 0.76038 0.92557 0.92576 0.91698 0.95776 0.94942 0.78015 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.30 6.05 -26.73 -0.16 -1.46 16 3 C 0.04 0.58 3.40 -3.82 -0.01 0.56 16 4 N -0.51 -6.60 5.12 -224.71 -1.15 -7.75 16 5 C 0.04 0.46 6.07 -2.29 -0.01 0.45 16 6 C -0.13 -1.37 7.08 -24.59 -0.17 -1.54 16 7 C -0.13 -1.72 6.46 -24.91 -0.16 -1.88 16 8 C 0.05 0.76 3.83 -67.87 -0.26 0.50 16 9 H 0.10 1.31 7.96 -51.93 -0.41 0.90 16 10 C 0.51 8.26 4.85 -10.98 -0.05 8.21 16 11 O -0.55 -10.29 13.44 5.55 0.07 -10.21 16 12 N -0.71 -11.36 4.52 -53.80 -0.24 -11.61 16 13 C 0.13 2.23 2.73 -67.93 -0.19 2.04 16 14 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 15 C -0.16 -2.16 9.48 37.16 0.35 -1.80 16 16 C 0.14 2.80 5.82 -4.04 -0.02 2.78 16 17 N -0.73 -18.03 5.43 -59.91 -0.33 -18.35 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.02 6.48 -51.93 -0.34 0.68 16 32 H 0.07 1.02 6.08 -51.93 -0.32 0.71 16 33 H 0.05 0.60 7.53 -51.93 -0.39 0.21 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.20 7.76 -51.93 -0.40 0.80 16 39 H 0.40 6.27 8.47 -40.82 -0.35 5.93 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.39 10.13 7.33 -40.82 -0.30 9.84 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -30.54 362.51 -9.39 -39.93 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -8.34 Total: 12.87 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.57 Total: -0.48 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.99 Total: -64.64 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.54 -9.39 -39.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754228936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.673 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds