Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46935 * 2 1 4 4 N 1.46899 * 109.46821 * 180.02562 * 3 2 1 5 5 C 1.47847 * 110.99950 * 285.00813 * 4 3 2 6 6 C 1.54911 * 104.79511 * 213.63726 * 5 4 3 7 7 C 1.55138 * 101.65156 * 37.07674 * 6 5 4 8 8 C 1.47452 * 111.00071 * 164.17014 * 4 3 2 9 9 H 1.09000 * 109.89029 * 242.66563 * 8 4 3 10 10 C 1.50704 * 109.88363 * 3.68680 * 8 4 3 11 11 O 1.21284 * 119.99929 * 50.29943 * 10 8 4 12 12 N 1.34781 * 119.99930 * 230.29100 * 10 8 4 13 13 C 1.46498 * 119.99819 * 180.02562 * 12 10 8 14 14 H 1.08998 * 109.47021 * 35.00269 * 13 12 10 15 15 C 1.53004 * 109.47026 * 275.00188 * 13 12 10 16 16 C 1.53002 * 109.46995 * 155.00445 * 13 12 10 17 17 N 1.46503 * 109.47056 * 304.99780 * 16 13 12 18 18 C 1.36928 * 120.00014 * 179.97438 * 17 16 13 19 19 H 1.08003 * 120.00455 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00042 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46868 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47190 * 120.00086 * 22 20 18 25 25 H 1.48504 * 109.47126 * 240.00137 * 22 20 18 26 26 H 1.09002 * 109.46954 * 60.00146 * 1 2 3 27 27 H 1.09003 * 109.46763 * 300.00132 * 1 2 3 28 28 H 1.08996 * 109.46694 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47409 * 119.99893 * 2 1 3 30 30 H 1.08992 * 109.47233 * 240.00075 * 2 1 3 31 31 H 1.09002 * 109.47181 * 299.99715 * 3 2 1 32 32 H 1.08999 * 109.47424 * 59.99800 * 3 2 1 33 33 H 1.08994 * 110.37454 * 332.47036 * 5 4 3 34 34 H 1.09004 * 110.36443 * 94.81229 * 5 4 3 35 35 H 1.08990 * 110.99037 * 278.98079 * 6 5 4 36 36 H 1.09002 * 110.98469 * 155.16473 * 6 5 4 37 37 H 1.09001 * 110.69831 * 205.96232 * 7 6 5 38 38 H 1.08995 * 110.86051 * 82.80060 * 7 6 5 39 39 H 0.96994 * 119.99896 * 0.02562 * 12 10 8 40 40 H 1.08998 * 109.47287 * 299.99918 * 15 13 12 41 41 H 1.08997 * 109.47035 * 60.00656 * 15 13 12 42 42 H 1.09002 * 109.46616 * 179.97438 * 15 13 12 43 43 H 1.08998 * 109.47245 * 64.99782 * 16 13 12 44 44 H 1.09000 * 109.47351 * 184.99930 * 16 13 12 45 45 H 0.97008 * 119.99603 * 0.02562 * 17 16 13 46 46 H 0.97000 * 119.99989 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0394 1.0849 1.3323 6 6 5.3454 1.9063 1.4718 7 6 4.9561 3.2350 0.7719 8 6 4.0373 2.7669 -0.3761 9 1 4.6092 2.6895 -1.3008 10 6 2.9006 3.7398 -0.5566 11 8 2.0534 3.8491 0.3044 12 7 2.8256 4.4886 -1.6748 13 6 1.7209 5.4348 -1.8500 14 1 1.4541 5.8645 -0.8845 15 6 0.5109 4.7034 -2.4347 16 6 2.1519 6.5510 -2.8035 17 7 3.3803 7.1733 -2.3035 18 6 3.9573 8.2033 -2.9970 19 1 3.5068 8.5573 -3.9125 20 6 5.1216 8.7926 -2.5235 21 7 5.6710 8.3610 -1.4080 22 14 5.9085 10.1983 -3.4693 23 1 5.1013 10.4931 -4.6803 24 1 5.9644 11.4054 -2.6063 25 1 7.2851 9.8140 -3.8727 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.3298 1.3651 2.1107 34 1 4.2553 0.0175 1.3807 35 1 6.1705 1.4187 0.9529 36 1 5.5905 2.0746 2.5205 37 1 5.8402 3.7363 0.3780 38 1 4.4158 3.8899 1.4554 39 1 3.5030 4.4011 -2.3634 40 1 0.7777 4.2736 -3.4002 41 1 0.2039 3.9083 -1.7553 42 1 -0.3111 5.4073 -2.5645 43 1 2.3334 6.1331 -3.7937 44 1 1.3635 7.3012 -2.8648 45 1 3.7852 6.8552 -1.4813 46 1 6.4844 8.7730 -1.0769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754228936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = -49.602765 kcal Electronic energy + Delta-G solvation = -23668.851856 eV Core-core repulsion = 20399.440892 eV Total energy + Delta-G solvation = -3269.410963 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81974 -39.20416 -37.47941 -35.54857 -35.38405 -33.15074 -31.82686 -31.68797 -29.99738 -27.44681 -26.43208 -24.71849 -23.84935 -22.84988 -21.81571 -21.68653 -20.95538 -19.21268 -18.31194 -17.53371 -16.73388 -16.67662 -16.43486 -16.08256 -15.82571 -15.34513 -15.28931 -14.84477 -14.53700 -14.28230 -13.93994 -13.85146 -13.67963 -13.38743 -13.23107 -13.12501 -12.86918 -12.82446 -12.63952 -12.58703 -12.21884 -12.11939 -12.09327 -11.92626 -11.78731 -11.73725 -11.70141 -11.48936 -11.04485 -10.91008 -10.07272 -9.32514 -9.02510 -7.95318 -5.25087 1.48070 1.48798 1.51584 1.58645 2.18954 2.55483 2.94414 3.38948 3.48225 3.67316 3.72113 3.87746 4.02127 4.06228 4.15597 4.22532 4.26861 4.33366 4.46270 4.49553 4.51217 4.63825 4.71286 4.75592 4.81829 4.86165 4.87102 4.91349 4.96157 4.99883 5.05649 5.08825 5.15280 5.24030 5.27156 5.29436 5.39441 5.49866 5.57448 5.82650 5.97661 6.25402 6.54171 7.20897 7.32828 8.05410 8.29787 9.27818 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.004323 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.184410 B = 6475.454184 C = 7586.065524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.051 3.949 4 N -0.504 5.504 5 C 0.039 3.961 6 C -0.116 4.116 7 C -0.130 4.130 8 C 0.055 3.945 9 H 0.113 0.887 10 C 0.504 3.496 11 O -0.578 6.578 12 N -0.704 5.704 13 C 0.141 3.859 14 H 0.056 0.944 15 C -0.144 4.144 16 C 0.146 3.854 17 N -0.743 5.743 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.072 4.072 21 N -0.967 5.967 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.297 1.297 25 H -0.292 1.292 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.408 0.592 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.374 0.626 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -18.053 1.705 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.077 4.077 4 N -0.229 5.229 5 C -0.089 4.089 6 C -0.154 4.154 7 C -0.169 4.169 8 C -0.056 4.056 9 H 0.131 0.869 10 C 0.291 3.709 11 O -0.458 6.458 12 N -0.354 5.354 13 C 0.035 3.965 14 H 0.075 0.925 15 C -0.203 4.203 16 C 0.019 3.981 17 N -0.387 5.387 18 C -0.377 4.377 19 H 0.097 0.903 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.802 3.198 23 H -0.190 1.190 24 H -0.225 1.225 25 H -0.219 1.219 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.244 0.756 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.206 0.794 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.161 -18.207 1.766 19.302 hybrid contribution 0.612 1.791 0.295 1.915 sum -5.549 -16.416 2.061 17.450 Atomic orbital electron populations 1.21702 0.95123 1.02303 1.01379 1.21475 0.95833 0.95007 1.02657 1.22580 0.87005 0.97615 1.00542 1.64131 1.08438 1.22302 1.28021 1.23239 0.95608 1.01508 0.88501 1.22703 0.97749 0.93285 1.01628 1.22708 0.98979 0.99120 0.96115 1.22662 0.93552 0.87642 1.01790 0.86915 1.21350 0.86984 0.81445 0.81139 1.90650 1.43151 1.68715 1.43261 1.46110 1.28434 1.39750 1.21134 1.21075 0.87464 0.89105 0.98811 0.92549 1.21987 0.96611 1.00576 1.01122 1.21122 0.88669 0.92764 0.95555 1.42533 1.27339 1.40162 1.28635 1.19668 1.04775 1.08745 1.04512 0.90350 1.25542 0.99325 1.02805 0.98760 1.69833 1.22336 1.45703 1.23857 0.85088 0.78039 0.78720 0.77961 1.18970 1.22475 1.21917 0.93231 0.93529 0.90929 0.91524 0.91171 0.92988 0.94222 0.94278 0.87846 0.88779 0.89300 0.89676 0.93132 0.75601 0.90919 0.93081 0.90199 0.94175 0.94544 0.79390 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.91 71.98 0.71 -2.02 16 2 C -0.11 -2.28 6.05 30.60 0.19 -2.10 16 3 C 0.05 1.35 3.40 86.30 0.29 1.64 16 4 N -0.50 -12.66 5.12 -864.85 -4.43 -17.09 16 5 C 0.04 0.83 6.07 86.77 0.53 1.35 16 6 C -0.12 -2.34 7.08 31.98 0.23 -2.11 16 7 C -0.13 -3.55 6.46 31.77 0.21 -3.35 16 8 C 0.05 1.53 3.83 44.51 0.17 1.70 16 9 H 0.11 2.86 7.96 -2.39 -0.02 2.84 16 10 C 0.50 16.84 4.85 87.66 0.42 17.27 16 11 O -0.58 -22.52 13.44 -3.04 -0.04 -22.56 16 12 N -0.70 -22.89 4.52 -442.52 -2.00 -24.89 16 13 C 0.14 4.73 2.73 44.99 0.12 4.86 16 14 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 15 C -0.14 -3.80 9.48 71.98 0.68 -3.12 16 16 C 0.15 5.55 5.82 86.38 0.50 6.05 16 17 N -0.74 -36.76 5.43 -343.45 -1.87 -38.63 16 18 C -0.25 -13.35 9.99 84.04 0.84 -12.51 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.97 -58.33 13.06 21.65 0.28 -58.04 16 22 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.25 7.70 -2.39 -0.02 1.23 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.54 6.48 -2.39 -0.02 1.53 16 32 H 0.04 1.27 6.08 -2.39 -0.01 1.25 16 33 H 0.04 0.93 7.53 -2.39 -0.02 0.91 16 34 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 1.64 7.76 -2.39 -0.02 1.62 16 39 H 0.41 12.60 8.47 -92.71 -0.79 11.82 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.37 20.09 7.33 -92.70 -0.68 19.41 16 46 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -65.73 362.51 -1.18 -66.91 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.51 Total: 42.79 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 5.36 Total: 4.09 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -8.01 Total: -138.65 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.04 Total: -22.56 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -65.73 -1.18 -66.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754228936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.308 kcal (2) G-P(sol) polarization free energy of solvation -65.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds