Wall clock time and date at job start Wed Apr 15 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47185 * 2 1 4 4 N 1.46901 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.46891 * 111.00302 * 66.03936 * 4 3 2 6 6 C 1.46904 * 111.00075 * 190.00000 * 4 3 2 7 7 C 1.50695 * 109.47140 * 169.99727 * 6 4 3 8 8 O 1.21281 * 120.00149 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99890 * 180.02562 * 7 6 4 10 10 C 1.47087 * 120.88164 * 179.97438 * 9 7 6 11 11 C 1.53233 * 108.51817 * 231.20398 * 10 9 7 12 12 N 1.46905 * 109.34461 * 306.16600 * 11 10 9 13 13 C 1.46895 * 110.99974 * 187.25362 * 12 11 10 14 14 C 1.50702 * 109.46770 * 170.00187 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72214 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46900 * 111.26196 * 63.11001 * 12 11 10 23 23 C 1.47077 * 120.88346 * 0.02562 * 9 7 6 24 24 H 1.08993 * 109.46937 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47325 * 300.00683 * 1 2 3 26 26 H 1.09008 * 109.47185 * 60.00368 * 1 2 3 27 27 H 1.08999 * 109.47438 * 239.99699 * 2 1 3 28 28 H 1.08996 * 109.47129 * 119.99209 * 2 1 3 29 29 H 1.08999 * 109.47179 * 59.99540 * 3 2 1 30 30 H 1.08998 * 109.46897 * 299.99878 * 3 2 1 31 31 H 1.09005 * 109.47201 * 183.95347 * 5 4 3 32 32 H 1.09003 * 109.47666 * 303.96080 * 5 4 3 33 33 H 1.09000 * 109.47206 * 63.95693 * 5 4 3 34 34 H 1.09000 * 109.46734 * 49.99275 * 6 4 3 35 35 H 1.09001 * 109.46638 * 289.99751 * 6 4 3 36 36 H 1.08999 * 109.62348 * 111.49529 * 10 9 7 37 37 H 1.08990 * 109.78576 * 351.00887 * 10 9 7 38 38 H 1.09003 * 109.49046 * 186.21182 * 11 10 9 39 39 H 1.08999 * 109.49709 * 66.12959 * 11 10 9 40 40 H 1.09004 * 109.47258 * 50.00511 * 13 12 11 41 41 H 1.08994 * 109.47601 * 290.00103 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.49699 * 56.85399 * 22 12 11 44 44 H 1.09003 * 109.48977 * 176.93746 * 22 12 11 45 45 H 1.09005 * 109.63045 * 248.50602 * 23 9 7 46 46 H 1.08998 * 109.62824 * 9.08326 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0350 0.8858 -1.2541 6 6 4.0356 2.7932 0.2375 7 6 5.5219 2.7183 0.4743 8 8 6.0869 1.6455 0.4478 9 7 6.2232 3.8434 0.7165 10 6 7.6744 3.7928 0.9507 11 6 7.9857 4.5557 2.2427 12 7 7.4170 5.9076 2.1586 13 6 7.8387 6.7281 3.3017 14 6 7.4460 8.1632 3.0618 15 1 6.9341 8.4381 2.1515 16 6 7.7348 9.1242 4.0075 17 7 8.3579 8.7894 5.1162 18 14 7.2413 10.9016 3.7135 19 1 6.5579 11.0149 2.4001 20 1 6.3195 11.3440 4.7906 21 1 8.4538 11.7591 3.7167 22 6 5.9524 5.8637 2.0538 23 6 5.5575 5.1544 0.7547 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 5.1224 0.8326 -1.1999 32 1 3.6292 -0.1144 -1.4060 33 1 3.7436 1.5263 -2.0866 34 1 3.5493 3.2235 1.1130 35 1 3.8373 3.4190 -0.6326 36 1 8.1966 4.2590 0.1152 37 1 7.9960 2.7562 1.0510 38 1 9.0657 4.6231 2.3740 39 1 7.5480 4.0290 3.0907 40 1 8.9205 6.6619 3.4171 41 1 7.3537 6.3654 4.2079 42 1 8.5614 9.4656 5.7813 43 1 5.5429 5.3188 2.9044 44 1 5.5576 6.8798 2.0480 45 1 5.8759 5.7518 -0.0997 46 1 4.4766 5.0171 0.7266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:37 Heat of formation + Delta-G solvation = -42.972717 kcal Electronic energy + Delta-G solvation = -22922.967396 eV Core-core repulsion = 19653.843933 eV Total energy + Delta-G solvation = -3269.123463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30745 -39.31235 -38.08258 -35.94980 -34.43066 -34.08333 -32.29948 -30.29050 -29.12399 -27.91049 -27.03476 -24.81194 -24.32717 -23.48909 -21.93711 -21.60561 -19.79088 -18.49188 -18.31534 -17.01629 -16.98045 -16.75375 -16.43605 -16.01624 -15.87804 -15.55673 -15.34069 -15.24835 -14.96506 -14.36784 -14.26584 -14.01004 -13.67717 -13.54635 -13.08457 -12.95137 -12.80940 -12.76383 -12.66620 -12.56217 -12.38331 -12.33296 -12.27476 -12.09800 -11.92470 -11.75367 -11.43732 -11.26546 -10.71930 -10.62426 -9.74929 -9.27335 -9.06245 -8.20030 -6.30459 1.43585 1.44680 1.57774 1.60983 1.89072 2.41483 2.94740 3.12726 3.22634 3.51194 3.97538 3.98549 4.04662 4.14012 4.22829 4.25859 4.27499 4.30452 4.44332 4.49123 4.54320 4.54907 4.58240 4.70392 4.74067 4.83863 4.85316 4.90537 4.94355 5.02114 5.11392 5.19795 5.23026 5.24703 5.31690 5.43878 5.46928 5.64487 5.94078 6.02456 6.11469 6.24211 6.46413 6.55867 6.85974 7.18318 7.39753 8.91664 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.003158 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.780421 B = 8865.525205 C = 9529.799783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.548 5.548 5 C 0.022 3.978 6 C 0.042 3.958 7 C 0.512 3.488 8 O -0.567 6.567 9 N -0.613 5.613 10 C 0.129 3.871 11 C 0.044 3.956 12 N -0.539 5.539 13 C 0.208 3.792 14 C -0.519 4.519 15 H 0.071 0.929 16 C -0.001 4.001 17 N -0.938 5.938 18 Si 0.972 3.028 19 H -0.257 1.257 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.048 3.952 23 C 0.121 3.879 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.013 0.987 40 H 0.003 0.997 41 H -0.042 1.042 42 H 0.264 0.736 43 H 0.014 0.986 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 -12.356 -13.224 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.273 5.273 5 C -0.125 4.125 6 C -0.089 4.089 7 C 0.301 3.699 8 O -0.446 6.446 9 N -0.347 5.347 10 C 0.006 3.994 11 C -0.085 4.085 12 N -0.264 5.264 13 C 0.081 3.919 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.796 3.204 19 H -0.180 1.180 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.081 4.081 23 C -0.002 4.002 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.031 0.969 40 H 0.021 0.979 41 H -0.024 1.024 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.862 -12.943 -13.135 23.069 hybrid contribution -0.061 1.049 0.787 1.312 sum -13.923 -11.895 -12.348 22.086 Atomic orbital electron populations 1.21707 0.94273 1.02261 1.02233 1.21515 0.96341 0.95760 1.02142 1.22265 0.84999 0.98168 1.01684 1.61605 1.08707 1.20378 1.36610 1.22493 1.01244 1.00158 0.88654 1.22038 0.90716 0.91880 1.04257 1.21071 0.90362 0.82772 0.75647 1.90622 1.72289 1.29177 1.52518 1.48337 1.08726 1.07538 1.70143 1.21536 0.80648 1.00526 0.96675 1.22423 1.00278 0.89427 0.96395 1.62021 1.09568 1.10762 1.44023 1.19382 0.94117 0.92521 0.85835 1.21486 1.37462 0.92653 1.04117 0.91056 1.25965 0.95162 1.04102 0.94675 1.70110 1.42504 1.35552 1.09653 0.85295 0.77892 0.78547 0.78641 1.18038 1.20668 1.20831 1.22391 0.88199 1.01160 0.96336 1.22010 0.98478 0.82059 0.97612 0.92096 0.92382 0.92158 0.91980 0.92460 0.90101 0.93572 0.92032 0.90525 0.94963 0.86391 0.89466 0.90062 0.89508 0.90243 0.96893 0.97862 1.02390 0.92765 0.96725 0.89352 0.89489 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.74 5.87 30.60 0.18 -1.56 16 3 C 0.06 0.86 4.96 86.31 0.43 1.29 16 4 N -0.55 -11.64 4.50 -927.05 -4.17 -15.81 16 5 C 0.02 0.46 9.01 127.69 1.15 1.61 16 6 C 0.04 0.83 3.81 85.55 0.33 1.16 16 7 C 0.51 14.35 7.43 87.66 0.65 15.00 16 8 O -0.57 -19.89 13.77 -3.03 -0.04 -19.93 16 9 N -0.61 -17.19 3.01 -818.05 -2.46 -19.65 16 10 C 0.13 3.94 6.59 86.35 0.57 4.51 16 11 C 0.04 1.60 5.62 86.38 0.49 2.09 16 12 N -0.54 -22.36 4.62 -899.92 -4.16 -26.52 16 13 C 0.21 10.86 4.72 85.56 0.40 11.27 16 14 C -0.52 -28.21 8.41 25.60 0.22 -27.99 16 15 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 16 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 17 N -0.94 -55.85 13.29 21.45 0.28 -55.56 16 18 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.05 1.67 5.45 86.37 0.47 2.14 16 23 C 0.12 2.99 6.50 86.33 0.56 3.55 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.06 0.90 6.47 -2.39 -0.02 0.89 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.15 7.93 -2.39 -0.02 1.13 16 30 H 0.05 0.61 8.12 -2.39 -0.02 0.59 16 31 H 0.06 1.63 5.88 -2.38 -0.01 1.61 16 32 H 0.08 1.41 6.30 -2.39 -0.02 1.40 16 33 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 2.03 7.45 -2.39 -0.02 2.01 16 35 H 0.09 1.34 7.98 -2.39 -0.02 1.32 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.09 2.70 7.07 -2.39 -0.02 2.68 16 38 H 0.08 2.87 7.99 -2.39 -0.02 2.85 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.00 0.19 7.97 -2.38 -0.02 0.17 16 41 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 42 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 44 H 0.09 3.23 6.67 -2.39 -0.02 3.22 16 45 H 0.09 2.04 8.14 -2.38 -0.02 2.03 16 46 H 0.12 2.01 6.02 -2.39 -0.01 1.99 16 Total: -1.00 -68.32 356.48 -0.97 -69.29 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.93 Total: 10.82 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.62 Total: 12.56 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -10.51 Total: -117.55 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.04 Total: -19.93 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -68.32 -0.97 -69.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.320 kcal (2) G-P(sol) polarization free energy of solvation -68.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds