Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 N 1.46903 * 109.46769 * 119.99618 * 2 1 3 5 5 C 1.46900 * 111.00066 * 56.05227 * 4 2 1 6 6 C 1.46903 * 110.99895 * 179.97438 * 4 2 1 7 7 C 1.50702 * 109.47085 * 170.00084 * 6 4 2 8 8 O 1.21283 * 119.99909 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99711 * 180.02562 * 7 6 4 10 10 C 1.46504 * 119.99730 * 179.97438 * 9 7 6 11 11 C 1.53081 * 109.43848 * 84.79387 * 10 9 7 12 12 C 1.53190 * 109.29209 * 181.23616 * 11 10 9 13 13 N 1.46921 * 108.89311 * 305.57883 * 12 11 10 14 14 C 1.36940 * 120.63187 * 233.51481 * 13 12 11 15 15 H 1.08001 * 120.00319 * 152.61971 * 14 13 12 16 16 C 1.38813 * 119.99903 * 332.62203 * 14 13 12 17 17 N 1.31624 * 120.00070 * 159.34992 * 16 14 13 18 18 Si 1.86800 * 120.00077 * 339.35529 * 16 14 13 19 19 H 1.48494 * 109.47321 * 92.87851 * 18 16 14 20 20 H 1.48501 * 109.47194 * 212.88430 * 18 16 14 21 21 H 1.48509 * 109.46983 * 332.87654 * 18 16 14 22 22 C 1.46923 * 118.74178 * 53.54201 * 13 12 11 23 23 C 1.53035 * 109.45960 * 204.99782 * 10 9 7 24 24 H 1.08993 * 109.47253 * 300.00626 * 1 2 3 25 25 H 1.09007 * 109.46808 * 60.00445 * 1 2 3 26 26 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47363 * 239.99692 * 2 1 3 28 28 H 1.09001 * 109.47148 * 59.99560 * 3 2 1 29 29 H 1.08998 * 109.47420 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47249 * 300.00148 * 3 2 1 31 31 H 1.08999 * 109.47090 * 183.95510 * 5 4 2 32 32 H 1.09004 * 109.46698 * 303.94744 * 5 4 2 33 33 H 1.08992 * 109.47580 * 63.94775 * 5 4 2 34 34 H 1.09006 * 109.47081 * 50.00430 * 6 4 2 35 35 H 1.09000 * 109.47011 * 290.00270 * 6 4 2 36 36 H 0.96998 * 120.00063 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.46073 * 324.97324 * 10 9 7 38 38 H 1.08992 * 109.38800 * 61.36034 * 11 10 9 39 39 H 1.09002 * 109.61927 * 301.25313 * 11 10 9 40 40 H 1.08999 * 109.58729 * 185.71870 * 12 11 10 41 41 H 1.09004 * 109.58886 * 65.43758 * 12 11 10 42 42 H 0.97001 * 119.99914 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.59094 * 66.17180 * 22 13 12 44 44 H 1.09001 * 109.59077 * 186.46452 * 22 13 12 45 45 H 1.09002 * 109.49848 * 58.67960 * 23 10 9 46 46 H 1.09002 * 109.52425 * 298.59433 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4730 -2.0535 1.2817 6 6 3.4881 -0.7126 1.2332 7 6 3.9530 -1.2049 2.5796 8 8 3.1409 -1.5086 3.4277 9 7 5.2711 -1.3067 2.8414 10 6 5.7231 -1.7848 4.1505 11 6 5.7488 -3.3154 4.1528 12 6 6.1921 -3.8121 5.5325 13 7 7.4753 -3.1837 5.8746 14 6 8.5509 -3.9481 6.2408 15 1 9.5540 -3.5876 6.0668 16 6 8.3519 -5.1865 6.8355 17 7 9.3129 -6.0858 6.8205 18 14 6.7202 -5.5768 7.6569 19 1 5.8228 -6.2467 6.6817 20 1 6.9520 -6.4765 8.8155 21 1 6.0888 -4.3175 8.1268 22 6 7.5826 -1.7195 5.8171 23 6 7.1272 -1.2458 4.4332 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.7948 -2.5186 2.2135 32 1 0.3842 -2.0099 1.2545 33 1 1.8342 -2.6417 0.4382 34 1 3.8693 0.2944 1.0632 35 1 3.8603 -1.3784 0.4545 36 1 5.9206 -1.0635 2.1633 37 1 5.0373 -1.4340 4.9217 38 1 6.4510 -3.6666 3.3968 39 1 4.7528 -3.6985 3.9308 40 1 6.3101 -4.8954 5.5103 41 1 5.4428 -3.5413 6.2764 42 1 9.1737 -6.9513 7.2358 43 1 6.9460 -1.2760 6.5828 44 1 8.6176 -1.4220 5.9851 45 1 7.1103 -0.1562 4.4089 46 1 7.8187 -1.6159 3.6762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609331973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = -29.159899 kcal Electronic energy + Delta-G solvation = -23284.885533 eV Core-core repulsion = 20016.361039 eV Total energy + Delta-G solvation = -3268.524494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14100 -39.52711 -38.41935 -36.01694 -34.08382 -33.06460 -31.99388 -31.91044 -29.90057 -27.59477 -26.52631 -25.44269 -24.44147 -23.51729 -21.48247 -21.19549 -20.73328 -18.91178 -18.05214 -17.70005 -17.10705 -16.71604 -16.10095 -15.95365 -15.81017 -15.52458 -15.35744 -14.97658 -14.73337 -14.49395 -14.11768 -14.04089 -13.80900 -13.48973 -13.40981 -13.13833 -12.91539 -12.73132 -12.66292 -12.56821 -12.35886 -12.22741 -12.04913 -11.94668 -11.75935 -11.55240 -11.48612 -11.43461 -10.83451 -10.64682 -9.98357 -9.25869 -8.97946 -8.19003 -5.50037 1.27219 1.38110 1.46597 1.71197 2.09546 2.38802 3.01537 3.02706 3.32409 3.75147 3.86311 3.95181 3.98287 4.07274 4.23453 4.29588 4.31182 4.31999 4.43826 4.45722 4.57842 4.59673 4.67176 4.69764 4.83303 4.86266 4.92304 4.94431 4.96604 5.01890 5.04770 5.08145 5.12318 5.15433 5.32848 5.41853 5.43387 5.57776 5.85510 5.97473 6.11512 6.16384 6.68674 6.89017 7.37945 7.59814 8.01315 9.00654 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.033479 B = 0.003486 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.145873 B = 8029.973807 C = 8523.842503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 C -0.146 4.146 4 N -0.539 5.539 5 C 0.019 3.981 6 C 0.037 3.963 7 C 0.508 3.492 8 O -0.568 6.568 9 N -0.714 5.714 10 C 0.162 3.838 11 C -0.128 4.128 12 C 0.126 3.874 13 N -0.619 5.619 14 C -0.244 4.244 15 H 0.062 0.938 16 C -0.031 4.031 17 N -0.954 5.954 18 Si 0.938 3.062 19 H -0.281 1.281 20 H -0.308 1.308 21 H -0.266 1.266 22 C 0.143 3.857 23 C -0.124 4.124 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.414 0.586 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 15.922 -17.945 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 C -0.204 4.204 4 N -0.265 5.265 5 C -0.129 4.129 6 C -0.094 4.094 7 C 0.295 3.705 8 O -0.446 6.446 9 N -0.366 5.366 10 C 0.057 3.943 11 C -0.169 4.169 12 C 0.000 4.000 13 N -0.344 5.344 14 C -0.374 4.374 15 H 0.080 0.920 16 C -0.226 4.226 17 N -0.600 5.600 18 Si 0.767 3.233 19 H -0.208 1.208 20 H -0.237 1.237 21 H -0.191 1.191 22 C 0.017 3.983 23 C -0.163 4.163 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.039 15.863 -16.890 27.624 hybrid contribution 0.107 -1.367 -0.014 1.372 sum -14.932 14.495 -16.904 26.811 Atomic orbital electron populations 1.21906 0.93761 1.02134 1.02538 1.21768 0.96329 0.95526 0.89766 1.21924 1.01444 0.94375 1.02629 1.61708 1.06175 1.18145 1.40459 1.22503 1.01103 0.88508 1.00743 1.22102 0.89835 1.04448 0.92971 1.21150 0.82116 0.76938 0.90333 1.90669 1.54199 1.50316 1.49453 1.46006 1.07146 1.67068 1.16389 1.20625 0.96091 0.92400 0.85210 1.22210 1.00141 0.96837 0.97670 1.21257 0.87199 0.96688 0.94852 1.44538 1.08610 1.02626 1.78639 1.18920 0.87123 0.99112 1.32222 0.92025 1.25821 0.99672 0.96906 1.00238 1.69944 1.35685 1.06009 1.48389 0.86054 0.81465 0.77587 0.78149 1.20818 1.23716 1.19069 1.21113 1.00247 0.81838 0.95054 1.22138 0.94269 1.01393 0.98529 0.92784 0.90428 0.92620 0.93333 0.92782 0.91723 0.90461 0.92339 0.90403 0.95336 0.85162 0.90148 0.74876 0.91748 0.91736 0.92644 0.93302 0.95863 0.92956 0.95044 0.91231 0.88480 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.84 71.98 0.64 -1.27 16 2 C 0.07 1.03 2.68 44.91 0.12 1.15 16 3 C -0.15 -1.63 8.99 71.98 0.65 -0.98 16 4 N -0.54 -10.71 4.37 -901.59 -3.94 -14.65 16 5 C 0.02 0.42 8.84 127.69 1.13 1.54 16 6 C 0.04 0.64 5.26 85.56 0.45 1.09 16 7 C 0.51 12.83 7.52 87.66 0.66 13.49 16 8 O -0.57 -19.87 13.97 -3.04 -0.04 -19.92 16 9 N -0.71 -16.08 5.08 -442.34 -2.25 -18.32 16 10 C 0.16 4.84 2.41 45.03 0.11 4.95 16 11 C -0.13 -4.63 5.66 30.68 0.17 -4.46 16 12 C 0.13 5.61 4.20 86.36 0.36 5.97 16 13 N -0.62 -29.08 2.77 -699.09 -1.94 -31.02 16 14 C -0.24 -13.77 10.03 84.03 0.84 -12.93 16 15 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 16 C -0.03 -1.86 5.23 84.86 0.44 -1.41 16 17 N -0.95 -60.25 13.97 21.65 0.30 -59.95 16 18 Si 0.94 48.18 24.34 68.60 1.67 49.85 16 19 H -0.28 -13.93 6.62 99.48 0.66 -13.28 16 20 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 21 H -0.27 -13.32 6.64 99.48 0.66 -12.66 16 22 C 0.14 5.22 6.52 86.37 0.56 5.79 16 23 C -0.12 -3.42 5.55 30.67 0.17 -3.25 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.05 0.75 6.26 -2.39 -0.01 0.73 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.60 6.20 -2.39 -0.01 0.58 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 1.65 5.88 -2.39 -0.01 1.64 16 32 H 0.08 1.51 6.01 -2.38 -0.01 1.50 16 33 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.13 1.58 5.83 -2.38 -0.01 1.57 16 35 H 0.08 1.10 8.12 -2.39 -0.02 1.08 16 36 H 0.41 6.34 8.60 -92.71 -0.80 5.54 16 37 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 2.41 4.50 -2.39 -0.01 2.40 16 41 H 0.02 1.06 7.07 -2.38 -0.02 1.04 16 42 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 45 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -72.92 346.50 0.18 -72.74 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.06 Total: 11.58 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 6.31 Total: 9.68 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -7.82 Total: -123.94 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.04 Total: -19.92 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.67 Total: 49.85 kcal Total: -72.92 0.18 -72.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609331973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.581 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds