Wall clock time and date at job start Wed Apr 15 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 N 1.46511 * 109.47108 * 179.97438 * 3 2 1 5 5 C 1.34767 * 119.99785 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00912 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99733 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.47014 * 300.00173 * 7 5 4 9 9 C 1.53005 * 109.47051 * 59.99803 * 7 5 4 10 10 N 1.46896 * 109.47128 * 179.97438 * 7 5 4 11 11 C 1.46961 * 110.99735 * 174.99762 * 10 7 5 12 12 C 1.53059 * 109.36302 * 183.18721 * 11 10 7 13 13 N 1.46952 * 109.36370 * 301.60193 * 12 11 10 14 14 C 1.46906 * 110.99889 * 183.18679 * 13 12 11 15 15 C 1.50701 * 109.46965 * 170.00017 * 14 13 12 16 16 H 1.08005 * 120.00268 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99915 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99666 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47066 * 59.99502 * 19 17 15 21 21 H 1.48496 * 109.47010 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46833 * 299.99859 * 19 17 15 23 23 C 1.46961 * 110.88410 * 59.32054 * 13 12 11 24 24 C 1.46955 * 111.00246 * 298.79916 * 10 7 5 25 25 H 1.09002 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46815 * 300.00546 * 1 2 3 27 27 H 1.08994 * 109.46385 * 60.00426 * 1 2 3 28 28 H 1.08997 * 109.47410 * 239.99598 * 2 1 3 29 29 H 1.09004 * 109.46926 * 119.99683 * 2 1 3 30 30 H 1.09000 * 109.47897 * 59.99587 * 3 2 1 31 31 H 1.09004 * 109.47055 * 299.99605 * 3 2 1 32 32 H 0.96999 * 119.99271 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.47344 * 300.00264 * 9 7 5 34 34 H 1.09004 * 109.46910 * 60.00305 * 9 7 5 35 35 H 1.08998 * 109.47155 * 179.97438 * 9 7 5 36 36 H 1.09003 * 109.48904 * 63.22353 * 11 10 7 37 37 H 1.08997 * 109.51213 * 303.16639 * 11 10 7 38 38 H 1.08999 * 109.48651 * 181.63251 * 12 11 10 39 39 H 1.08996 * 109.48556 * 61.57139 * 12 11 10 40 40 H 1.08993 * 109.47164 * 289.99960 * 14 13 12 41 41 H 1.08996 * 109.46920 * 49.99994 * 14 13 12 42 42 H 0.97001 * 119.99343 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.48904 * 60.64354 * 23 13 12 44 44 H 1.09002 * 109.49205 * 180.70887 * 23 13 12 45 45 H 1.09008 * 109.48713 * 296.78155 * 24 10 7 46 46 H 1.09002 * 109.48661 * 56.82117 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5726 3.6600 -0.0011 7 6 5.6859 2.6097 0.0014 8 1 6.0486 2.0966 0.8921 9 6 6.1970 1.8874 -1.2468 10 7 6.1756 3.9947 0.0001 11 6 7.6396 4.0357 0.1208 12 6 8.1020 5.4929 0.1956 13 7 7.6554 6.2082 -1.0079 14 6 8.1450 7.5932 -1.0093 15 6 7.8818 8.2177 -2.3553 16 1 7.3995 7.6431 -3.1322 17 6 8.2578 9.5223 -2.5953 18 7 8.8456 10.2219 -1.6494 19 14 7.9310 10.2967 -4.2636 20 1 6.4712 10.2881 -4.5359 21 1 8.4261 11.6967 -4.2649 22 1 8.6354 9.5210 -5.3158 23 6 6.1913 6.1671 -1.1287 24 6 5.7290 4.7100 -1.2034 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9900 0.6024 0.0013 33 1 5.8336 0.8597 -1.2463 34 1 5.8344 2.4005 -2.1375 35 1 7.2870 1.8878 -1.2462 36 1 8.0898 3.5555 -0.7480 37 1 7.9452 3.5104 1.0257 38 1 9.1898 5.5266 0.2560 39 1 7.6736 5.9654 1.0795 40 1 7.6273 8.1623 -0.2372 41 1 9.2164 7.6000 -0.8088 42 1 9.1097 11.1398 -1.8182 43 1 5.7411 6.6473 -0.2598 44 1 5.8861 6.6924 -2.0337 45 1 6.1574 4.2374 -2.0874 46 1 4.6412 4.6759 -1.2640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:57 Heat of formation + Delta-G solvation = -27.532180 kcal Electronic energy + Delta-G solvation = -23082.061393 eV Core-core repulsion = 19813.607482 eV Total energy + Delta-G solvation = -3268.453911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 4.69 seconds Orbital eigenvalues (eV) -40.32643 -38.33920 -36.05827 -35.26274 -33.07699 -32.47855 -30.56058 -30.25575 -27.35563 -26.67632 -25.20782 -23.33902 -23.02643 -21.97817 -21.26551 -20.15664 -18.77320 -16.98578 -16.61352 -16.20612 -16.05137 -15.42644 -14.96410 -14.68488 -14.32288 -14.28643 -14.15076 -13.60677 -13.42494 -13.26363 -13.11299 -12.79153 -12.44050 -12.39973 -12.15749 -11.90490 -11.68311 -11.56533 -11.48838 -11.24995 -11.08627 -10.78072 -10.63925 -10.49049 -10.38733 -10.17756 -9.79859 -9.40172 -9.15188 -9.11783 -8.36902 -8.01050 -7.12622 -5.96177 -3.97174 2.63001 2.94064 3.38164 3.41481 3.44806 4.13053 4.44400 4.48110 4.57047 4.61679 4.84453 4.91041 4.97821 5.08010 5.24074 5.24619 5.35433 5.39255 5.42721 5.48111 5.49838 5.62373 5.69907 5.72988 5.76392 5.81891 5.91039 5.99196 6.12850 6.20612 6.28187 6.39769 6.53270 6.73325 6.87479 7.15691 7.26814 7.43046 7.44845 7.48326 7.87212 8.17218 8.21742 8.30214 8.64091 9.10138 9.66563 11.14764 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.003250 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.015008 B = 8612.618389 C = 9224.337285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.118 3.882 4 N -0.737 5.737 5 C 0.518 3.482 6 O -0.513 6.513 7 C 0.065 3.935 8 H 0.104 0.896 9 C -0.184 4.184 10 N -0.516 5.516 11 C 0.060 3.940 12 C 0.057 3.943 13 N -0.540 5.540 14 C 0.194 3.806 15 C -0.506 4.506 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.071 3.929 24 C 0.046 3.954 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.030 0.970 40 H -0.009 1.009 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.029 0.971 44 H 0.084 0.916 45 H 0.035 0.965 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 -23.585 4.300 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.005 4.005 4 N -0.391 5.391 5 C 0.303 3.697 6 O -0.387 6.387 7 C -0.048 4.048 8 H 0.121 0.879 9 C -0.243 4.243 10 N -0.241 5.241 11 C -0.068 4.068 12 C -0.072 4.072 13 N -0.265 5.265 14 C 0.069 3.931 15 C -0.544 4.544 16 H 0.080 0.920 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.058 4.058 24 C -0.081 4.081 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.009 0.991 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.102 0.898 45 H 0.053 0.947 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.068 -22.581 4.341 25.519 hybrid contribution 0.172 0.070 -0.794 0.816 sum -10.896 -22.511 3.547 25.259 Atomic orbital electron populations 1.21684 0.94575 1.02087 1.02456 1.21733 0.97003 0.95956 1.02615 1.21373 0.79720 0.96920 1.02515 1.46032 1.07165 1.08703 1.77211 1.20596 0.89890 0.83458 0.75719 1.90681 1.69976 1.30881 1.47144 1.21617 0.91572 0.92036 0.99542 0.87858 1.22425 1.02826 1.00268 0.98778 1.62156 1.11050 1.10131 1.40745 1.22224 0.86473 0.97990 1.00127 1.22040 0.99490 0.92628 0.93042 1.62312 1.09802 1.19023 1.35353 1.19687 0.95340 0.81341 0.96775 1.21126 1.38586 0.96596 0.98123 0.92020 1.24991 0.95407 0.97191 0.97069 1.69958 1.41239 1.09883 1.32830 0.86565 0.78587 0.78060 0.84217 1.20265 1.21393 1.20238 1.21948 0.88647 0.93764 1.01411 1.22566 1.01427 0.94797 0.89305 0.92241 0.92305 0.92284 0.91362 0.91370 0.91532 0.91542 0.76843 0.92082 0.91391 0.90893 0.93912 0.91288 0.91018 0.95136 0.99083 0.95311 0.92937 0.95277 0.89773 0.94719 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.14 -0.73 6.05 -26.73 -0.16 -0.89 16 3 C 0.12 0.99 5.67 -4.04 -0.02 0.97 16 4 N -0.74 -6.54 5.45 -60.29 -0.33 -6.86 16 5 C 0.52 6.67 6.85 -10.99 -0.08 6.59 16 6 O -0.51 -8.94 13.93 5.56 0.08 -8.87 16 7 C 0.06 0.77 2.77 -68.86 -0.19 0.58 16 8 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 9 C -0.18 -1.82 8.39 37.16 0.31 -1.51 16 10 N -0.52 -8.25 4.49 -227.86 -1.02 -9.27 16 11 C 0.06 0.92 5.25 -3.76 -0.02 0.90 16 12 C 0.06 1.09 5.61 -3.77 -0.02 1.07 16 13 N -0.54 -12.36 4.70 -235.91 -1.11 -13.47 16 14 C 0.19 5.28 4.72 -4.97 -0.02 5.26 16 15 C -0.51 -14.68 8.47 -34.44 -0.29 -14.97 16 16 H 0.06 1.77 7.13 -52.48 -0.37 1.40 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 19 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.07 1.54 5.43 -3.77 -0.02 1.52 16 24 C 0.05 0.84 4.70 -3.77 -0.02 0.82 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 2.32 7.89 -40.82 -0.32 2.00 16 33 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 34 H 0.07 0.79 6.45 -51.93 -0.34 0.46 16 35 H 0.07 0.73 6.59 -51.93 -0.34 0.38 16 36 H 0.04 0.65 6.60 -51.93 -0.34 0.30 16 37 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 38 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 41 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.94 6.79 -51.93 -0.35 1.59 16 45 H 0.03 0.62 6.46 -51.92 -0.34 0.28 16 46 H 0.09 1.77 5.40 -51.93 -0.28 1.49 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -33.72 354.90 -9.70 -43.42 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -8.12 Total: -2.22 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.26 Total: 1.43 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -1.72 Total: -56.31 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.72 -9.70 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.884 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.69 seconds