Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 N 1.46511 * 109.47108 * 179.97438 * 3 2 1 5 5 C 1.34767 * 119.99785 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00912 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99733 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.47014 * 300.00173 * 7 5 4 9 9 C 1.53005 * 109.47051 * 59.99803 * 7 5 4 10 10 N 1.46896 * 109.47128 * 179.97438 * 7 5 4 11 11 C 1.46961 * 110.99735 * 174.99762 * 10 7 5 12 12 C 1.53059 * 109.36302 * 183.18721 * 11 10 7 13 13 N 1.46952 * 109.36370 * 301.60193 * 12 11 10 14 14 C 1.46906 * 110.99889 * 183.18679 * 13 12 11 15 15 C 1.50701 * 109.46965 * 170.00017 * 14 13 12 16 16 H 1.08005 * 120.00268 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99915 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99666 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47066 * 59.99502 * 19 17 15 21 21 H 1.48496 * 109.47010 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46833 * 299.99859 * 19 17 15 23 23 C 1.46961 * 110.88410 * 59.32054 * 13 12 11 24 24 C 1.46955 * 111.00246 * 298.79916 * 10 7 5 25 25 H 1.09002 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46815 * 300.00546 * 1 2 3 27 27 H 1.08994 * 109.46385 * 60.00426 * 1 2 3 28 28 H 1.08997 * 109.47410 * 239.99598 * 2 1 3 29 29 H 1.09004 * 109.46926 * 119.99683 * 2 1 3 30 30 H 1.09000 * 109.47897 * 59.99587 * 3 2 1 31 31 H 1.09004 * 109.47055 * 299.99605 * 3 2 1 32 32 H 0.96999 * 119.99271 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.47344 * 300.00264 * 9 7 5 34 34 H 1.09004 * 109.46910 * 60.00305 * 9 7 5 35 35 H 1.08998 * 109.47155 * 179.97438 * 9 7 5 36 36 H 1.09003 * 109.48904 * 63.22353 * 11 10 7 37 37 H 1.08997 * 109.51213 * 303.16639 * 11 10 7 38 38 H 1.08999 * 109.48651 * 181.63251 * 12 11 10 39 39 H 1.08996 * 109.48556 * 61.57139 * 12 11 10 40 40 H 1.08993 * 109.47164 * 289.99960 * 14 13 12 41 41 H 1.08996 * 109.46920 * 49.99994 * 14 13 12 42 42 H 0.97001 * 119.99343 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.48904 * 60.64354 * 23 13 12 44 44 H 1.09002 * 109.49205 * 180.70887 * 23 13 12 45 45 H 1.09008 * 109.48713 * 296.78155 * 24 10 7 46 46 H 1.09002 * 109.48661 * 56.82117 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5726 3.6600 -0.0011 7 6 5.6859 2.6097 0.0014 8 1 6.0486 2.0966 0.8921 9 6 6.1970 1.8874 -1.2468 10 7 6.1756 3.9947 0.0001 11 6 7.6396 4.0357 0.1208 12 6 8.1020 5.4929 0.1956 13 7 7.6554 6.2082 -1.0079 14 6 8.1450 7.5932 -1.0093 15 6 7.8818 8.2177 -2.3553 16 1 7.3995 7.6431 -3.1322 17 6 8.2578 9.5223 -2.5953 18 7 8.8456 10.2219 -1.6494 19 14 7.9310 10.2967 -4.2636 20 1 6.4712 10.2881 -4.5359 21 1 8.4261 11.6967 -4.2649 22 1 8.6354 9.5210 -5.3158 23 6 6.1913 6.1671 -1.1287 24 6 5.7290 4.7100 -1.2034 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9900 0.6024 0.0013 33 1 5.8336 0.8597 -1.2463 34 1 5.8344 2.4005 -2.1375 35 1 7.2870 1.8878 -1.2462 36 1 8.0898 3.5555 -0.7480 37 1 7.9452 3.5104 1.0257 38 1 9.1898 5.5266 0.2560 39 1 7.6736 5.9654 1.0795 40 1 7.6273 8.1623 -0.2372 41 1 9.2164 7.6000 -0.8088 42 1 9.1097 11.1398 -1.8182 43 1 5.7411 6.6473 -0.2598 44 1 5.8861 6.6924 -2.0337 45 1 6.1574 4.2374 -2.0874 46 1 4.6412 4.6759 -1.2640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -53.992109 kcal Electronic energy + Delta-G solvation = -23083.208781 eV Core-core repulsion = 19813.607482 eV Total energy + Delta-G solvation = -3269.601300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41263 -39.69788 -37.11149 -36.54701 -34.73999 -33.68618 -31.90302 -31.69328 -29.16903 -27.37058 -26.74850 -24.66406 -24.53404 -23.13437 -22.53279 -21.22580 -20.21015 -18.51845 -17.92204 -17.64898 -16.90721 -16.73618 -16.25787 -15.92830 -15.85366 -15.67727 -15.34516 -15.20573 -14.72812 -14.58760 -13.98731 -13.85455 -13.68070 -13.49489 -13.33858 -13.12213 -12.89511 -12.83647 -12.68270 -12.57943 -12.45298 -12.26268 -12.02919 -11.94458 -11.87501 -11.73396 -11.55190 -11.19764 -10.63925 -10.55731 -10.05678 -9.25780 -9.04064 -8.21940 -6.32576 1.38948 1.43098 1.50958 1.65638 2.10181 2.39132 2.97047 3.09714 3.29749 3.75245 3.92068 3.95701 4.08319 4.09933 4.21671 4.21756 4.36059 4.37416 4.38648 4.47892 4.66638 4.69583 4.70840 4.77770 4.80634 4.88348 4.92566 4.97159 5.02152 5.10419 5.15944 5.16906 5.23510 5.26038 5.30558 5.36815 5.53569 5.62028 5.97366 6.03573 6.07085 6.31428 6.60990 6.63028 6.82419 7.32662 7.36844 8.89315 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.003250 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.015008 B = 8612.618389 C = 9224.337285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.117 3.883 4 N -0.716 5.716 5 C 0.513 3.487 6 O -0.568 6.568 7 C 0.066 3.934 8 H 0.137 0.863 9 C -0.177 4.177 10 N -0.536 5.536 11 C 0.071 3.929 12 C 0.051 3.949 13 N -0.540 5.540 14 C 0.209 3.791 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.265 1.265 23 C 0.075 3.925 24 C 0.067 3.933 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.417 0.583 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.015 0.985 40 H -0.045 1.045 41 H 0.008 0.992 42 H 0.265 0.735 43 H 0.003 0.997 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 -26.761 3.628 29.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.007 4.007 4 N -0.370 5.370 5 C 0.300 3.700 6 O -0.447 6.447 7 C -0.045 4.045 8 H 0.154 0.846 9 C -0.236 4.236 10 N -0.261 5.261 11 C -0.057 4.057 12 C -0.078 4.078 13 N -0.265 5.265 14 C 0.082 3.918 15 C -0.564 4.564 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.190 1.190 23 C -0.054 4.054 24 C -0.061 4.061 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.254 0.746 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.033 0.967 40 H -0.028 1.028 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.022 0.978 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.094 -25.848 3.679 28.368 hybrid contribution 0.148 1.003 -0.494 1.128 sum -10.946 -24.845 3.185 27.335 Atomic orbital electron populations 1.21708 0.94487 1.02794 1.02021 1.21675 0.96966 0.93685 1.03863 1.21427 0.79323 0.98893 1.01068 1.45869 1.07449 1.08475 1.75194 1.20893 0.90481 0.83606 0.75038 1.90669 1.70985 1.33005 1.50029 1.21770 0.90798 0.89843 1.02110 0.84587 1.22381 1.03060 1.01748 0.96389 1.62023 1.11470 1.13078 1.39496 1.22172 0.86121 0.94962 1.02429 1.22219 0.99939 0.94924 0.90681 1.62269 1.10328 1.16352 1.37581 1.19355 0.93629 0.83589 0.95206 1.21412 1.38939 0.97337 0.98685 0.92088 1.25959 0.94797 0.97624 1.01394 1.70091 1.41929 1.10336 1.35138 0.85402 0.78788 0.77224 0.79003 1.19478 1.20564 1.18993 1.21876 0.87871 0.96494 0.99112 1.22217 1.00827 0.92291 0.90795 0.90909 0.92752 0.92839 0.90105 0.89996 0.93028 0.93150 0.74591 0.88416 0.93493 0.90334 0.92899 0.87491 0.90346 0.96697 1.02774 0.97353 0.92610 0.97847 0.91979 0.94143 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.02 6.05 30.60 0.19 -0.84 16 3 C 0.12 1.81 5.67 86.38 0.49 2.30 16 4 N -0.72 -10.94 5.45 -463.05 -2.52 -13.47 16 5 C 0.51 12.42 6.85 87.66 0.60 13.02 16 6 O -0.57 -20.04 13.93 -3.02 -0.04 -20.08 16 7 C 0.07 1.38 2.77 44.17 0.12 1.50 16 8 H 0.14 2.00 8.11 -2.39 -0.02 1.98 16 9 C -0.18 -2.84 8.39 71.98 0.60 -2.23 16 10 N -0.54 -16.39 4.49 -874.82 -3.92 -20.32 16 11 C 0.07 2.01 5.25 86.31 0.45 2.46 16 12 C 0.05 1.96 5.61 86.31 0.48 2.45 16 13 N -0.54 -25.60 4.70 -900.27 -4.23 -29.83 16 14 C 0.21 11.97 4.72 85.56 0.40 12.37 16 15 C -0.53 -31.51 8.47 25.60 0.22 -31.29 16 16 H 0.06 3.59 7.13 -2.91 -0.02 3.57 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 19 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C 0.08 3.43 5.43 86.31 0.47 3.90 16 24 C 0.07 2.43 4.70 86.31 0.41 2.84 16 25 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.42 3.16 7.89 -92.71 -0.73 2.43 16 33 H 0.10 0.85 7.56 -2.39 -0.02 0.83 16 34 H 0.05 0.98 6.45 -2.39 -0.02 0.96 16 35 H 0.08 1.22 6.59 -2.39 -0.02 1.21 16 36 H 0.05 1.43 6.60 -2.39 -0.02 1.41 16 37 H 0.11 2.29 8.12 -2.39 -0.02 2.27 16 38 H 0.08 2.88 8.07 -2.39 -0.02 2.86 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 40 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 41 H 0.01 0.51 8.03 -2.39 -0.02 0.49 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.06 3.04 6.79 -2.39 -0.02 3.02 16 45 H 0.04 1.42 6.46 -2.38 -0.02 1.41 16 46 H 0.09 3.37 5.40 -2.39 -0.01 3.36 16 Total: -1.00 -77.34 354.90 -2.58 -79.92 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.22 Total: 7.55 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.61 Total: 6.37 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -10.39 Total: -121.82 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.08 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -77.34 -2.58 -79.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.931 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds