Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47136 * 2 1 4 4 N 1.46504 * 109.47008 * 180.02562 * 3 2 1 5 5 C 1.34774 * 119.99791 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00229 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00017 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.46734 * 32.93012 * 7 5 4 9 9 C 1.52999 * 109.47175 * 272.93178 * 7 5 4 10 10 N 1.46897 * 109.47009 * 152.93113 * 7 5 4 11 11 C 1.46962 * 111.00115 * 296.76501 * 10 7 5 12 12 C 1.53042 * 109.38240 * 176.82508 * 11 10 7 13 13 N 1.46951 * 109.36883 * 58.39113 * 12 11 10 14 14 C 1.46900 * 111.00319 * 176.81300 * 13 12 11 15 15 C 1.50706 * 109.46927 * 189.99964 * 14 13 12 16 16 H 1.07995 * 120.00322 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99652 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99760 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99776 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47268 * 90.00260 * 19 17 15 21 21 H 1.48502 * 109.46609 * 209.99762 * 19 17 15 22 22 H 1.48496 * 109.47528 * 329.99834 * 19 17 15 23 23 C 1.46962 * 110.87836 * 300.67825 * 13 12 11 24 24 C 1.46953 * 111.01743 * 172.95379 * 10 7 5 25 25 H 1.09006 * 109.47179 * 299.99665 * 1 2 3 26 26 H 1.09001 * 109.47348 * 59.99636 * 1 2 3 27 27 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47179 * 240.00335 * 2 1 3 29 29 H 1.09001 * 109.47348 * 120.00364 * 2 1 3 30 30 H 1.08994 * 109.47017 * 60.00513 * 3 2 1 31 31 H 1.08994 * 109.46959 * 300.00403 * 3 2 1 32 32 H 0.97002 * 119.99967 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.47283 * 59.99901 * 9 7 5 34 34 H 1.09003 * 109.46914 * 179.97438 * 9 7 5 35 35 H 1.08997 * 109.47484 * 299.99928 * 9 7 5 36 36 H 1.08998 * 109.48799 * 56.84254 * 11 10 7 37 37 H 1.09004 * 109.48638 * 296.80369 * 11 10 7 38 38 H 1.09006 * 109.48991 * 178.35881 * 12 11 10 39 39 H 1.08999 * 109.48810 * 298.42215 * 12 11 10 40 40 H 1.08997 * 109.46956 * 309.99530 * 14 13 12 41 41 H 1.09003 * 109.47175 * 69.99749 * 14 13 12 42 42 H 0.96996 * 119.99901 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.49153 * 179.28389 * 23 13 12 44 44 H 1.08996 * 109.49096 * 299.35180 * 23 13 12 45 45 H 1.08999 * 109.47081 * 63.19948 * 24 10 7 46 46 H 1.08996 * 109.50842 * 303.15689 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0011 7 6 5.6859 2.6097 -0.0003 8 1 6.0492 1.7473 -0.5593 9 6 6.1960 2.5354 1.4403 10 7 6.1755 3.8432 -0.6301 11 6 5.7685 3.9118 -2.0405 12 6 6.2284 5.2438 -2.6376 13 7 7.6876 5.3583 -2.5075 14 6 8.1773 6.5916 -3.1378 15 6 9.6826 6.5586 -3.2035 16 1 10.2215 5.7070 -2.8156 17 6 10.3716 7.6159 -3.7590 18 7 11.6851 7.5873 -3.8160 19 14 9.4393 9.0892 -4.4294 20 1 9.2612 10.0947 -3.3512 21 1 10.2070 9.6935 -5.5478 22 1 8.1089 8.6508 -4.9222 23 6 8.0946 5.2902 -1.0970 24 6 7.6347 3.9582 -0.4999 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9900 0.6024 -0.0013 33 1 5.8327 1.6201 1.9077 34 1 7.2860 2.5350 1.4402 35 1 5.8327 3.3977 1.9993 36 1 4.6832 3.8375 -2.1098 37 1 6.2252 3.0894 -2.5912 38 1 5.9530 5.2843 -3.6916 39 1 5.7502 6.0656 -2.1047 40 1 7.7712 6.6702 -4.1462 41 1 7.8580 7.4518 -2.5494 42 1 12.1699 8.3312 -4.2064 43 1 9.1799 5.3644 -1.0276 44 1 7.6377 6.1126 -0.5466 45 1 8.1129 3.1363 -1.0328 46 1 7.9105 3.9175 0.5539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -27.147398 kcal Electronic energy + Delta-G solvation = -22989.277248 eV Core-core repulsion = 19720.840023 eV Total energy + Delta-G solvation = -3268.437226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -40.24645 -38.44316 -36.11558 -35.31187 -33.02562 -32.50578 -31.11786 -30.36231 -27.95647 -26.83255 -25.12031 -23.72567 -22.40593 -21.92593 -21.09160 -20.07795 -19.21845 -17.14500 -16.85136 -16.63300 -16.07889 -15.60620 -14.95232 -14.53389 -14.38204 -14.32121 -14.16449 -13.71554 -13.56742 -13.36425 -13.03795 -12.80815 -12.52017 -12.42333 -12.36729 -12.07133 -11.82963 -11.57987 -11.56010 -11.33347 -11.28883 -10.92946 -10.74740 -10.62791 -10.46013 -9.92379 -9.78335 -9.66960 -9.26829 -9.21306 -8.54856 -8.14617 -7.32596 -6.02903 -3.99822 2.57742 2.90622 3.31799 3.38970 3.42351 3.98857 4.41204 4.45278 4.54289 4.58763 4.80944 4.83179 4.95093 4.98808 5.21277 5.21518 5.24331 5.30068 5.36874 5.46789 5.52836 5.58207 5.63409 5.69830 5.72396 5.78465 5.78953 5.89116 5.94481 6.07977 6.17445 6.23944 6.40506 6.54532 6.67586 6.89287 6.99981 7.05245 7.25891 7.37473 7.64175 7.95369 8.09681 8.16938 8.69041 9.04844 9.59418 11.10171 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.003120 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.030435 B = 8971.123537 C = 9448.946942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.738 5.738 5 C 0.517 3.483 6 O -0.515 6.515 7 C 0.067 3.933 8 H 0.057 0.943 9 C -0.143 4.143 10 N -0.518 5.518 11 C 0.062 3.938 12 C 0.057 3.943 13 N -0.529 5.529 14 C 0.162 3.838 15 C -0.508 4.508 16 H 0.080 0.920 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.876 3.124 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.067 3.933 24 C 0.056 3.944 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.028 0.972 41 H -0.015 1.015 42 H 0.263 0.737 43 H 0.093 0.907 44 H 0.031 0.969 45 H 0.041 0.959 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.187 -16.934 9.672 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.005 4.005 4 N -0.392 5.392 5 C 0.303 3.697 6 O -0.388 6.388 7 C -0.045 4.045 8 H 0.075 0.925 9 C -0.201 4.201 10 N -0.244 5.244 11 C -0.066 4.066 12 C -0.072 4.072 13 N -0.254 5.254 14 C 0.036 3.964 15 C -0.546 4.546 16 H 0.098 0.902 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.703 3.297 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.062 4.062 24 C -0.071 4.071 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.003 0.997 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.482 -16.022 9.601 26.277 hybrid contribution -0.199 0.414 -0.472 0.658 sum -18.681 -15.609 9.130 25.999 Atomic orbital electron populations 1.21681 0.94564 1.02129 1.02410 1.21737 0.97003 0.95909 1.02699 1.21367 0.79714 0.96983 1.02426 1.46088 1.07226 1.08785 1.77141 1.20617 0.89859 0.83482 0.75784 1.90717 1.69902 1.31117 1.47063 1.21539 0.91478 0.93533 0.97963 0.92539 1.21841 1.02260 1.02583 0.93387 1.61965 1.13003 1.33474 1.15925 1.22171 0.99618 0.98042 0.86776 1.22063 0.90027 0.95550 0.99594 1.62144 1.08679 1.40211 1.14395 1.20165 0.97067 0.85386 0.93806 1.21030 0.88840 1.05240 1.39479 0.90185 1.24898 0.94741 0.98118 0.95618 1.69890 1.06199 1.32123 1.45837 0.86851 0.80404 0.83365 0.79068 1.20331 1.21208 1.19181 1.22038 1.01594 0.94288 0.88268 1.22364 0.85514 0.98805 1.00437 0.92346 0.92288 0.92198 0.91290 0.91339 0.91601 0.91577 0.76787 0.92021 0.90705 0.90961 0.90974 0.94434 0.91024 0.94815 0.95404 0.99728 0.92703 0.88839 0.95090 0.94062 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.14 -0.72 6.05 -26.73 -0.16 -0.88 16 3 C 0.12 0.97 5.67 -4.04 -0.02 0.95 16 4 N -0.74 -6.54 5.56 -60.29 -0.33 -6.87 16 5 C 0.52 6.57 6.00 -10.98 -0.07 6.51 16 6 O -0.51 -8.81 15.78 5.56 0.09 -8.72 16 7 C 0.07 0.80 2.47 -68.86 -0.17 0.63 16 8 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 9 C -0.14 -1.41 8.71 37.16 0.32 -1.09 16 10 N -0.52 -8.06 4.27 -227.88 -0.97 -9.03 16 11 C 0.06 1.01 5.33 -3.77 -0.02 0.99 16 12 C 0.06 1.08 5.61 -3.77 -0.02 1.05 16 13 N -0.53 -11.58 4.70 -235.91 -1.11 -12.69 16 14 C 0.16 4.07 3.79 -4.97 -0.02 4.05 16 15 C -0.51 -14.58 9.03 -34.43 -0.31 -14.89 16 16 H 0.08 2.48 7.37 -52.49 -0.39 2.09 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 19 Si 0.88 21.95 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 23 C 0.07 1.33 5.43 -3.76 -0.02 1.31 16 24 C 0.06 0.89 5.14 -3.77 -0.02 0.87 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 2.39 8.47 -40.82 -0.35 2.04 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.70 6.25 -51.93 -0.32 0.37 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.17 6.56 -51.93 -0.34 0.83 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 41 H -0.01 -0.38 7.55 -51.93 -0.39 -0.77 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.09 2.01 6.79 -51.93 -0.35 1.66 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.07 6.02 -51.93 -0.31 0.76 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -33.80 357.55 -9.40 -43.20 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.33 Total: -2.58 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -0.24 Total: 1.02 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -1.64 Total: -55.59 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.80 -9.40 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.054 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds