Wall clock time and date at job start Wed Apr 15 2020 11:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47136 * 2 1 4 4 N 1.46504 * 109.47008 * 180.02562 * 3 2 1 5 5 C 1.34774 * 119.99791 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00229 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00017 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.46734 * 32.93012 * 7 5 4 9 9 C 1.52999 * 109.47175 * 272.93178 * 7 5 4 10 10 N 1.46897 * 109.47009 * 152.93113 * 7 5 4 11 11 C 1.46962 * 111.00115 * 296.76501 * 10 7 5 12 12 C 1.53042 * 109.38240 * 176.82508 * 11 10 7 13 13 N 1.46951 * 109.36883 * 58.39113 * 12 11 10 14 14 C 1.46900 * 111.00319 * 176.81300 * 13 12 11 15 15 C 1.50706 * 109.46927 * 189.99964 * 14 13 12 16 16 H 1.07995 * 120.00322 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99652 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99760 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99776 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47268 * 90.00260 * 19 17 15 21 21 H 1.48502 * 109.46609 * 209.99762 * 19 17 15 22 22 H 1.48496 * 109.47528 * 329.99834 * 19 17 15 23 23 C 1.46962 * 110.87836 * 300.67825 * 13 12 11 24 24 C 1.46953 * 111.01743 * 172.95379 * 10 7 5 25 25 H 1.09006 * 109.47179 * 299.99665 * 1 2 3 26 26 H 1.09001 * 109.47348 * 59.99636 * 1 2 3 27 27 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47179 * 240.00335 * 2 1 3 29 29 H 1.09001 * 109.47348 * 120.00364 * 2 1 3 30 30 H 1.08994 * 109.47017 * 60.00513 * 3 2 1 31 31 H 1.08994 * 109.46959 * 300.00403 * 3 2 1 32 32 H 0.97002 * 119.99967 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.47283 * 59.99901 * 9 7 5 34 34 H 1.09003 * 109.46914 * 179.97438 * 9 7 5 35 35 H 1.08997 * 109.47484 * 299.99928 * 9 7 5 36 36 H 1.08998 * 109.48799 * 56.84254 * 11 10 7 37 37 H 1.09004 * 109.48638 * 296.80369 * 11 10 7 38 38 H 1.09006 * 109.48991 * 178.35881 * 12 11 10 39 39 H 1.08999 * 109.48810 * 298.42215 * 12 11 10 40 40 H 1.08997 * 109.46956 * 309.99530 * 14 13 12 41 41 H 1.09003 * 109.47175 * 69.99749 * 14 13 12 42 42 H 0.96996 * 119.99901 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.49153 * 179.28389 * 23 13 12 44 44 H 1.08996 * 109.49096 * 299.35180 * 23 13 12 45 45 H 1.08999 * 109.47081 * 63.19948 * 24 10 7 46 46 H 1.08996 * 109.50842 * 303.15689 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0011 7 6 5.6859 2.6097 -0.0003 8 1 6.0492 1.7473 -0.5593 9 6 6.1960 2.5354 1.4403 10 7 6.1755 3.8432 -0.6301 11 6 5.7685 3.9118 -2.0405 12 6 6.2284 5.2438 -2.6376 13 7 7.6876 5.3583 -2.5075 14 6 8.1773 6.5916 -3.1378 15 6 9.6826 6.5586 -3.2035 16 1 10.2215 5.7070 -2.8156 17 6 10.3716 7.6159 -3.7590 18 7 11.6851 7.5873 -3.8160 19 14 9.4393 9.0892 -4.4294 20 1 9.2612 10.0947 -3.3512 21 1 10.2070 9.6935 -5.5478 22 1 8.1089 8.6508 -4.9222 23 6 8.0946 5.2902 -1.0970 24 6 7.6347 3.9582 -0.4999 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9900 0.6024 -0.0013 33 1 5.8327 1.6201 1.9077 34 1 7.2860 2.5350 1.4402 35 1 5.8327 3.3977 1.9993 36 1 4.6832 3.8375 -2.1098 37 1 6.2252 3.0894 -2.5912 38 1 5.9530 5.2843 -3.6916 39 1 5.7502 6.0656 -2.1047 40 1 7.7712 6.6702 -4.1462 41 1 7.8580 7.4518 -2.5494 42 1 12.1699 8.3312 -4.2064 43 1 9.1799 5.3644 -1.0276 44 1 7.6377 6.1126 -0.5466 45 1 8.1129 3.1363 -1.0328 46 1 7.9105 3.9175 0.5539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:01 Heat of formation + Delta-G solvation = -53.754965 kcal Electronic energy + Delta-G solvation = -22990.431039 eV Core-core repulsion = 19720.840023 eV Total energy + Delta-G solvation = -3269.591016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -41.29988 -39.76793 -37.11807 -36.52644 -34.70944 -33.64300 -32.42138 -31.73568 -29.73544 -27.52346 -26.59968 -25.02694 -23.58801 -22.95754 -22.52666 -21.09190 -20.62299 -18.96117 -18.06796 -17.82420 -16.87291 -16.68246 -16.30318 -15.95393 -15.91292 -15.57851 -15.40638 -15.22736 -14.86384 -14.51379 -14.35276 -13.84343 -13.64977 -13.56033 -13.38234 -13.18930 -12.93497 -12.80791 -12.74328 -12.52072 -12.44879 -12.22152 -12.03740 -12.02100 -11.79000 -11.73876 -11.47396 -11.37844 -10.79963 -10.70308 -10.09976 -9.34152 -9.08570 -8.29405 -6.32196 1.33704 1.34579 1.45858 1.60811 2.07636 2.33342 2.88111 3.02646 3.18338 3.71478 3.91287 3.93914 4.03779 4.08825 4.11753 4.14194 4.30128 4.36084 4.42084 4.42756 4.57044 4.66765 4.71817 4.74367 4.76118 4.81383 4.85676 4.89620 4.92825 4.97392 5.08713 5.13341 5.15461 5.24816 5.25844 5.34661 5.49832 5.51331 5.87292 5.95410 6.04845 6.33179 6.58799 6.61314 6.72807 7.28872 7.31237 8.86781 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.003120 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.030435 B = 8971.123537 C = 9448.946942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.117 3.883 4 N -0.719 5.719 5 C 0.516 3.484 6 O -0.567 6.567 7 C 0.066 3.934 8 H 0.083 0.917 9 C -0.139 4.139 10 N -0.535 5.535 11 C 0.073 3.927 12 C 0.057 3.943 13 N -0.539 5.539 14 C 0.171 3.829 15 C -0.513 4.513 16 H 0.043 0.957 17 C 0.011 3.989 18 N -0.944 5.944 19 Si 0.944 3.056 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.253 1.253 23 C 0.067 3.933 24 C 0.070 3.930 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.416 0.584 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.021 0.979 40 H 0.029 0.971 41 H -0.019 1.019 42 H 0.267 0.733 43 H 0.068 0.932 44 H 0.019 0.981 45 H 0.045 0.955 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.807 -18.605 10.052 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.006 4.006 4 N -0.373 5.373 5 C 0.302 3.698 6 O -0.444 6.444 7 C -0.045 4.045 8 H 0.101 0.899 9 C -0.197 4.197 10 N -0.261 5.261 11 C -0.055 4.055 12 C -0.072 4.072 13 N -0.264 5.264 14 C 0.044 3.956 15 C -0.551 4.551 16 H 0.061 0.939 17 C -0.187 4.187 18 N -0.585 5.585 19 Si 0.768 3.232 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.177 1.177 23 C -0.062 4.062 24 C -0.058 4.058 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.253 0.747 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.047 0.953 41 H -0.002 1.002 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.117 -17.769 9.995 28.641 hybrid contribution 0.305 0.832 -0.535 1.035 sum -19.812 -16.937 9.460 27.728 Atomic orbital electron populations 1.21702 0.94347 1.02799 1.02096 1.21683 0.97076 0.93772 1.03783 1.21432 0.79136 0.98860 1.01188 1.45957 1.07632 1.08548 1.75180 1.20787 0.90185 0.83631 0.75161 1.90703 1.70816 1.33076 1.49810 1.21680 0.91035 0.92627 0.99203 0.89911 1.21852 1.02716 1.03314 0.91791 1.61871 1.12503 1.36298 1.15466 1.22000 0.99627 0.96408 0.87452 1.22133 0.87884 0.96907 1.00267 1.62088 1.10643 1.38264 1.15413 1.19934 0.94681 0.86860 0.94102 1.21200 0.90769 1.04152 1.39022 0.93867 1.25781 0.95598 1.01362 0.95951 1.70026 1.07983 1.33442 1.47054 0.85764 0.79514 0.79320 0.78638 1.19563 1.20338 1.17700 1.22009 1.00046 0.96658 0.87447 1.22207 0.85957 0.96067 1.01522 0.92566 0.92809 0.90997 0.90377 0.89983 0.92695 0.93114 0.74731 0.88994 0.89882 0.92825 0.90686 0.93700 0.90317 0.96060 0.95315 1.00182 0.92366 0.91393 0.96235 0.93717 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.00 6.05 30.59 0.19 -0.82 16 3 C 0.12 1.74 5.67 86.38 0.49 2.23 16 4 N -0.72 -10.97 5.56 -463.06 -2.57 -13.54 16 5 C 0.52 12.20 6.00 87.66 0.53 12.72 16 6 O -0.57 -19.13 15.78 -3.04 -0.05 -19.18 16 7 C 0.07 1.41 2.47 44.17 0.11 1.52 16 8 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 9 C -0.14 -2.34 8.71 71.98 0.63 -1.72 16 10 N -0.54 -15.85 4.27 -874.88 -3.74 -19.59 16 11 C 0.07 2.30 5.33 86.31 0.46 2.76 16 12 C 0.06 2.12 5.61 86.31 0.48 2.61 16 13 N -0.54 -23.72 4.70 -900.28 -4.23 -27.96 16 14 C 0.17 8.67 3.79 85.56 0.32 8.99 16 15 C -0.51 -30.26 9.03 25.60 0.23 -30.03 16 16 H 0.04 2.80 7.37 -2.91 -0.02 2.78 16 17 C 0.01 0.63 5.47 84.66 0.46 1.10 16 18 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 19 Si 0.94 45.34 27.47 68.60 1.88 47.22 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 23 C 0.07 2.70 5.43 86.31 0.47 3.17 16 24 C 0.07 2.12 5.14 86.31 0.44 2.57 16 25 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.42 3.47 8.47 -92.71 -0.79 2.68 16 33 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 1.27 6.25 -2.39 -0.01 1.26 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 2.34 6.56 -2.39 -0.02 2.33 16 37 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.08 2.79 8.07 -2.38 -0.02 2.77 16 39 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.03 1.45 7.08 -2.39 -0.02 1.43 16 41 H -0.02 -1.00 7.55 -2.39 -0.02 -1.01 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.07 3.05 6.79 -2.39 -0.02 3.04 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.10 2.63 6.02 -2.39 -0.01 2.61 16 Total: -1.00 -75.15 357.55 -2.78 -77.93 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.10 Total: 9.64 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.52 Total: 4.61 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -10.24 Total: -120.23 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.05 Total: -19.18 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -75.15 -2.78 -77.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.179 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds