Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47182 * 2 1 4 4 N 1.46904 * 109.47298 * 239.99755 * 2 1 3 5 5 C 1.46900 * 111.00250 * 273.89228 * 4 2 1 6 6 H 1.09000 * 109.50293 * 33.21852 * 5 4 2 7 7 C 1.53116 * 109.50057 * 153.29655 * 5 4 2 8 8 C 1.53121 * 109.15882 * 177.59319 * 7 5 4 9 9 C 1.53034 * 109.27848 * 302.34641 * 8 7 5 10 10 N 1.46846 * 109.52420 * 59.17962 * 9 8 7 11 11 C 1.46895 * 111.00351 * 174.15674 * 10 9 8 12 12 C 1.50702 * 109.47432 * 293.95590 * 11 10 9 13 13 O 1.21279 * 119.99693 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00303 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00123 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47193 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00278 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99494 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00243 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47096 * 89.99714 * 20 18 16 22 22 H 1.48498 * 109.46971 * 209.99703 * 20 18 16 23 23 H 1.48495 * 109.47047 * 329.99758 * 20 18 16 24 24 C 1.46851 * 111.19653 * 298.25993 * 10 9 8 25 25 H 1.09002 * 109.47404 * 56.57352 * 1 2 3 26 26 H 1.09005 * 109.46957 * 176.57173 * 1 2 3 27 27 H 1.09003 * 109.47004 * 296.56975 * 1 2 3 28 28 H 1.08998 * 109.47184 * 120.00159 * 2 1 3 29 29 H 1.09000 * 109.47129 * 60.00202 * 3 2 1 30 30 H 1.08997 * 109.47371 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47191 * 300.00154 * 3 2 1 32 32 H 1.00905 * 110.99914 * 149.93310 * 4 2 1 33 33 H 1.09000 * 109.52761 * 297.50252 * 7 5 4 34 34 H 1.09002 * 109.52475 * 57.62716 * 7 5 4 35 35 H 1.08999 * 109.50294 * 62.28743 * 8 7 5 36 36 H 1.09004 * 109.50377 * 182.40667 * 8 7 5 37 37 H 1.09005 * 109.45876 * 179.19146 * 9 8 7 38 38 H 1.08998 * 109.46424 * 299.17296 * 9 8 7 39 39 H 1.09003 * 109.46977 * 53.95416 * 11 10 9 40 40 H 1.08997 * 109.47440 * 173.95139 * 11 10 9 41 41 H 0.97000 * 119.99678 * 359.97438 * 14 12 11 42 42 H 1.09003 * 109.47172 * 300.00240 * 15 14 12 43 43 H 1.09005 * 109.46854 * 59.99634 * 15 14 12 44 44 H 0.97006 * 119.99631 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.45653 * 301.72086 * 24 10 9 46 46 H 1.09002 * 109.46245 * 181.75976 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.1075 -2.1412 -0.9720 6 1 1.3125 -2.4519 -0.2941 7 6 1.9588 -2.8779 -2.3060 8 6 2.1114 -4.3829 -2.0686 9 6 3.4706 -4.6570 -1.4211 10 7 3.5633 -3.9307 -0.1482 11 6 4.7976 -4.2789 0.5680 12 6 4.7457 -5.7264 0.9842 13 8 3.7757 -6.4013 0.7114 14 7 5.7772 -6.2708 1.6595 15 6 5.7265 -7.6778 2.0645 16 6 6.9928 -8.0350 2.7992 17 1 7.7590 -7.2888 2.9490 18 6 7.1738 -9.3148 3.2791 19 7 6.2410 -10.2236 3.0962 20 14 8.7432 -9.7574 4.1904 21 1 8.5603 -9.5053 5.6425 22 1 9.0540 -11.1930 3.9726 23 1 9.8628 -8.9256 3.6808 24 6 3.4668 -2.4802 -0.3563 25 1 -0.3634 0.5661 -0.8577 26 1 -0.3633 -1.0259 -0.0615 27 1 -0.3633 0.4597 0.9192 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 2.9089 -0.3184 -1.4953 33 1 0.9745 -2.6736 -2.7273 34 1 2.7290 -2.5374 -2.9980 35 1 1.3170 -4.7295 -1.4077 36 1 2.0491 -4.9097 -3.0209 37 1 3.5765 -5.7263 -1.2377 38 1 4.2649 -4.3226 -2.0885 39 1 5.6547 -4.1195 -0.0863 40 1 4.8941 -3.6497 1.4528 41 1 6.5532 -5.7311 1.8774 42 1 4.8698 -7.8367 2.7194 43 1 5.6293 -8.3072 1.1799 44 1 6.3681 -11.1240 3.4342 45 1 4.2611 -2.1562 -1.0287 46 1 3.5699 -1.9684 0.6006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731032712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = -46.686912 kcal Electronic energy + Delta-G solvation = -22689.581057 eV Core-core repulsion = 19420.296534 eV Total energy + Delta-G solvation = -3269.284522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.78547 -38.46394 -36.64434 -34.17620 -33.40067 -32.32110 -31.66381 -28.51696 -27.86915 -27.39648 -26.37835 -23.34390 -22.72467 -21.93330 -20.79265 -19.79130 -19.61372 -17.15014 -16.32471 -16.03928 -15.69116 -15.24397 -15.07353 -14.73430 -14.66888 -14.29756 -14.06390 -13.90823 -13.51211 -13.23683 -12.83091 -12.65287 -12.55060 -12.34580 -12.13832 -11.96999 -11.87454 -11.57157 -11.50061 -11.34472 -11.05767 -10.98402 -10.89714 -10.67792 -10.53877 -10.45843 -10.29350 -9.39936 -9.03595 -8.73312 -8.61195 -8.20735 -7.84735 -6.17110 -4.24026 3.23439 3.29432 3.31751 3.39279 3.56975 3.96162 4.26394 4.42579 4.65202 4.70335 4.79214 4.84428 5.04241 5.13701 5.18262 5.19025 5.24695 5.38011 5.38771 5.43193 5.49058 5.55196 5.57664 5.59567 5.63845 5.70487 5.75658 5.83928 5.88281 6.03364 6.03648 6.09469 6.31973 6.39388 6.80732 7.00987 7.16402 7.21086 7.33158 7.45939 7.52451 7.67571 7.97117 8.64144 8.79117 9.13385 9.42837 10.93104 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.030650 B = 0.002829 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.312854 B = 9894.862097 C =10370.356102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 C -0.154 4.154 4 N -0.679 5.679 5 C 0.091 3.909 6 H 0.087 0.913 7 C -0.105 4.105 8 C -0.114 4.114 9 C 0.050 3.950 10 N -0.514 5.514 11 C 0.036 3.964 12 C 0.499 3.501 13 O -0.537 6.537 14 N -0.715 5.715 15 C 0.252 3.748 16 C -0.543 4.543 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.031 3.969 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.338 0.662 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.024 0.976 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.389 0.611 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.266 0.734 45 H 0.031 0.969 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 21.232 -8.610 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.212 4.212 4 N -0.310 5.310 5 C -0.019 4.019 6 H 0.105 0.895 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.078 4.078 10 N -0.239 5.239 11 C -0.096 4.096 12 C 0.282 3.718 13 O -0.415 6.415 14 N -0.365 5.365 15 C 0.131 3.869 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.099 4.099 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.221 0.779 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.222 20.354 -8.763 23.636 hybrid contribution 2.826 0.147 0.809 2.943 sum -5.396 20.501 -7.953 22.642 Atomic orbital electron populations 1.21791 0.94493 1.02110 1.01293 1.21541 0.96183 0.93998 0.91716 1.21982 1.00693 0.96006 1.02515 1.60751 1.33651 1.02989 1.33600 1.21637 0.96252 0.86888 0.97146 0.89460 1.21551 1.02034 0.94560 0.96198 1.21546 0.97904 0.95403 1.00376 1.22304 0.96235 1.01107 0.88129 1.61513 1.35570 1.05049 1.21762 1.22002 0.91805 0.96190 0.99567 1.20277 0.83598 0.88511 0.79372 1.90628 1.32590 1.62939 1.55339 1.46457 1.18961 1.15123 1.55918 1.19076 0.97448 0.74988 0.95403 1.21227 1.02895 0.96661 1.37381 0.91957 1.24956 0.97067 0.96073 0.95947 1.69978 1.33387 1.03775 1.45128 0.86417 0.82784 0.77767 0.79953 1.20449 1.20992 1.19783 1.22841 0.97839 0.89158 1.00061 0.92250 0.92569 0.92787 0.93527 0.91963 0.92867 0.91840 0.84353 0.91384 0.92511 0.90820 0.91413 0.88223 0.95812 0.92609 0.88605 0.77882 0.95553 0.95629 0.92443 0.95073 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.42 37.16 0.35 -0.78 16 2 C 0.08 0.61 3.03 -67.71 -0.21 0.41 16 3 C -0.15 -1.01 9.17 37.16 0.34 -0.67 16 4 N -0.68 -5.94 6.07 -99.66 -0.60 -6.55 16 5 C 0.09 0.94 2.42 -67.64 -0.16 0.78 16 6 H 0.09 1.05 7.19 -51.93 -0.37 0.67 16 7 C -0.11 -1.09 5.61 -26.61 -0.15 -1.24 16 8 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 9 C 0.05 0.71 5.11 -3.84 -0.02 0.69 16 10 N -0.51 -7.36 4.39 -236.12 -1.04 -8.40 16 11 C 0.04 0.52 5.45 -4.98 -0.03 0.50 16 12 C 0.50 9.92 7.50 -10.98 -0.08 9.84 16 13 O -0.54 -12.81 14.35 5.56 0.08 -12.73 16 14 N -0.72 -15.00 5.55 -61.47 -0.34 -15.34 16 15 C 0.25 6.68 5.43 -5.20 -0.03 6.65 16 16 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.03 0.34 4.70 -3.84 -0.02 0.33 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.42 7.26 -51.93 -0.38 0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.33 8.12 -51.93 -0.42 -0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.34 2.67 8.03 -39.29 -0.32 2.35 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.76 5.80 -51.93 -0.30 1.46 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.10 1.21 7.98 -51.93 -0.41 0.80 16 41 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.03 0.33 8.11 -51.93 -0.42 -0.10 16 46 H 0.07 0.74 7.47 -51.93 -0.39 0.35 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -31.18 362.56 -9.65 -40.84 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.35 Total: 4.78 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.58 Total: 1.54 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -1.25 Total: -55.72 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.18 -9.65 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731032712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.849 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds