Wall clock time and date at job start Wed Apr 15 2020 11:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47272 * 2 1 4 4 N 1.46898 * 109.47444 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99964 * 66.04203 * 4 3 2 6 6 C 1.46904 * 111.00117 * 190.00074 * 4 3 2 7 7 C 1.52993 * 109.46924 * 169.99996 * 6 4 3 8 8 C 1.50707 * 109.46827 * 179.97438 * 7 6 4 9 9 O 1.21275 * 120.00197 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99596 * 180.02562 * 8 7 6 11 11 C 1.46969 * 120.59184 * 179.97438 * 10 8 7 12 12 C 1.53365 * 108.63823 * 235.24762 * 11 10 8 13 13 N 1.46971 * 108.63406 * 310.57818 * 12 11 10 14 14 C 1.36933 * 120.58954 * 235.20080 * 13 12 11 15 15 H 1.08004 * 119.99676 * 151.84704 * 14 13 12 16 16 C 1.38804 * 120.00274 * 331.57456 * 14 13 12 17 17 N 1.31613 * 120.00257 * 342.82344 * 16 14 13 18 18 Si 1.86809 * 120.00042 * 162.81945 * 16 14 13 19 19 H 1.48504 * 109.46931 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46750 * 119.99895 * 18 16 14 21 21 H 1.48498 * 109.47076 * 239.99975 * 18 16 14 22 22 C 1.46964 * 118.81046 * 55.47559 * 13 12 11 23 23 C 1.46965 * 120.59893 * 0.02562 * 10 8 7 24 24 H 1.08996 * 109.46624 * 60.00156 * 1 2 3 25 25 H 1.08992 * 109.46781 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46888 * 300.00064 * 1 2 3 27 27 H 1.08990 * 109.47555 * 239.99793 * 2 1 3 28 28 H 1.09001 * 109.47175 * 119.99389 * 2 1 3 29 29 H 1.09004 * 109.47163 * 59.99595 * 3 2 1 30 30 H 1.09003 * 109.47028 * 299.99892 * 3 2 1 31 31 H 1.08995 * 109.47064 * 183.95343 * 5 4 3 32 32 H 1.08998 * 109.46723 * 303.96016 * 5 4 3 33 33 H 1.09002 * 109.46883 * 63.95607 * 5 4 3 34 34 H 1.09000 * 109.47239 * 49.99460 * 6 4 3 35 35 H 1.09000 * 109.46431 * 289.99882 * 6 4 3 36 36 H 1.09008 * 109.47542 * 59.99971 * 7 6 4 37 37 H 1.08996 * 109.47528 * 299.99998 * 7 6 4 38 38 H 1.09001 * 109.60759 * 115.50025 * 11 10 8 39 39 H 1.08998 * 109.74755 * 355.07824 * 11 10 8 40 40 H 1.08993 * 109.61301 * 190.83327 * 12 11 10 41 41 H 1.09004 * 109.75220 * 70.40370 * 12 11 10 42 42 H 0.97004 * 120.00510 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.60931 * 64.27031 * 22 13 12 44 44 H 1.09004 * 109.60392 * 184.78099 * 22 13 12 45 45 H 1.09002 * 109.60509 * 244.49992 * 23 10 8 46 46 H 1.09000 * 109.60856 * 4.83277 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8855 -1.2524 6 6 4.0354 2.7932 0.2388 7 6 5.5442 2.7172 0.4804 8 6 6.0843 4.1030 0.7241 9 8 5.3361 5.0573 0.7059 10 7 7.3989 4.2817 0.9613 11 6 7.9397 5.6273 1.2001 12 6 9.0721 5.8853 0.1986 13 7 9.9906 4.7382 0.2226 14 6 11.3264 4.9200 0.4627 15 1 11.9051 4.1313 0.9204 16 6 11.9381 6.1159 0.1127 17 7 11.3502 6.9320 -0.7362 18 14 13.5956 6.5671 0.8467 19 1 14.0399 5.4888 1.7659 20 1 14.5915 6.7298 -0.2428 21 1 13.4732 7.8411 1.5998 22 6 9.4508 3.3933 -0.0218 23 6 8.3176 3.1348 0.9848 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.1233 0.8322 -1.1974 32 1 3.6304 -0.1148 -1.4042 33 1 3.7453 1.5257 -2.0853 34 1 3.5485 3.2239 1.1138 35 1 3.8378 3.4188 -0.6317 36 1 6.0312 2.2866 -0.3947 37 1 5.7418 2.0916 1.3508 38 1 8.3287 5.6901 2.2164 39 1 7.1536 6.3698 1.0628 40 1 9.6100 6.7905 0.4797 41 1 8.6585 6.0018 -0.8032 42 1 11.7778 7.7676 -0.9811 43 1 9.0612 3.3346 -1.0381 44 1 10.2389 2.6526 0.1139 45 1 8.7335 3.0198 1.9857 46 1 7.7790 2.2290 0.7062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113567888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:42 Heat of formation + Delta-G solvation = -11.255382 kcal Electronic energy + Delta-G solvation = -22917.385343 eV Core-core repulsion = 19649.637247 eV Total energy + Delta-G solvation = -3267.748096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.72719 -38.06487 -36.74728 -33.93359 -33.83247 -31.27837 -31.11766 -29.82024 -27.40426 -26.98702 -25.35825 -23.63433 -22.87205 -21.81894 -20.88119 -20.22403 -18.48689 -17.28815 -16.30291 -16.05019 -15.69029 -15.36200 -14.97490 -14.81751 -14.52271 -14.26154 -13.67027 -13.60229 -13.27177 -13.20058 -13.11391 -12.97428 -12.34672 -12.23733 -12.00416 -11.93091 -11.76309 -11.58507 -11.26116 -11.08891 -10.94521 -10.82810 -10.76097 -10.71028 -10.55205 -10.25094 -9.97657 -9.84430 -9.32522 -8.60737 -8.50471 -8.22437 -6.72476 -5.86004 -3.31561 3.01489 3.33154 3.34808 3.41397 3.43285 3.86152 4.43220 4.64523 4.79363 4.84739 4.95622 5.06386 5.11835 5.20912 5.24734 5.28502 5.31885 5.39964 5.48622 5.52532 5.58128 5.72214 5.74928 5.77393 5.82111 5.89249 5.90953 5.91861 5.93707 6.05608 6.15192 6.34726 6.38935 6.49930 6.68875 6.87251 6.88842 6.90220 7.25699 7.54068 7.71632 7.93751 8.35059 8.58973 9.10794 9.73607 10.30403 11.21368 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.046655 B = 0.002925 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.009967 B = 9569.098170 C = 9830.410888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.546 5.546 5 C 0.017 3.983 6 C 0.072 3.928 7 C -0.134 4.134 8 C 0.509 3.491 9 O -0.560 6.560 10 N -0.597 5.597 11 C 0.087 3.913 12 C 0.158 3.842 13 N -0.592 5.592 14 C -0.257 4.257 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.131 3.869 23 C 0.089 3.911 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.022 0.978 42 H 0.255 0.745 43 H 0.023 0.977 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 -12.913 1.637 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.269 5.269 5 C -0.132 4.132 6 C -0.056 4.056 7 C -0.174 4.174 8 C 0.297 3.703 9 O -0.440 6.440 10 N -0.329 5.329 11 C -0.036 4.036 12 C 0.032 3.968 13 N -0.314 5.314 14 C -0.386 4.386 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.003 3.997 23 C -0.036 4.036 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.944 -12.545 1.950 20.381 hybrid contribution 0.754 0.791 -0.429 1.174 sum -15.190 -11.754 1.522 19.267 Atomic orbital electron populations 1.21741 0.95720 1.01679 1.01812 1.21549 0.95281 0.96444 1.02652 1.22156 0.87063 0.97148 1.00954 1.61989 1.07569 1.22524 1.34865 1.22507 1.01104 0.99767 0.89781 1.21809 0.93859 0.88122 1.01769 1.21611 0.96349 0.95288 1.04184 1.20525 0.82052 0.90970 0.76771 1.90641 1.57211 1.43137 1.53017 1.48077 1.06553 1.09253 1.69008 1.22478 0.97914 0.82631 1.00621 1.21184 0.88312 0.92857 0.94450 1.44028 1.04517 1.00469 1.82434 1.19228 0.84690 1.01262 1.33423 0.91408 1.25099 0.98003 0.99295 0.97205 1.70029 1.39474 1.12311 1.32658 0.86204 0.83535 0.78259 0.78629 1.20181 1.21688 1.21452 1.21358 0.93970 0.89681 0.94679 1.22459 0.92351 0.87358 1.01445 0.92898 0.92592 0.92635 0.91985 0.91124 0.90759 0.94897 0.91015 0.91223 0.95585 0.90106 0.93973 0.89100 0.88411 0.92254 0.90204 0.88293 0.95939 0.93491 0.95945 0.91465 0.91566 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.94 5.86 -26.73 -0.16 -1.09 16 3 C 0.05 0.51 4.96 -3.82 -0.02 0.49 16 4 N -0.55 -5.82 4.76 -242.91 -1.16 -6.98 16 5 C 0.02 0.16 9.13 60.07 0.55 0.70 16 6 C 0.07 0.91 4.25 -3.83 -0.02 0.89 16 7 C -0.13 -1.73 3.97 -27.88 -0.11 -1.84 16 8 C 0.51 8.84 7.70 -10.98 -0.08 8.76 16 9 O -0.56 -11.49 15.39 5.56 0.09 -11.41 16 10 N -0.60 -10.85 2.95 -172.24 -0.51 -11.36 16 11 C 0.09 1.77 6.59 -3.60 -0.02 1.75 16 12 C 0.16 3.79 5.51 -3.60 -0.02 3.77 16 13 N -0.59 -14.41 2.96 -171.80 -0.51 -14.91 16 14 C -0.26 -6.81 9.57 -15.06 -0.14 -6.95 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 16 C 0.00 0.08 4.91 -17.44 -0.09 -0.01 16 17 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 18 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 C 0.13 2.56 6.70 -3.39 -0.02 2.53 16 23 C 0.09 1.43 6.52 -3.39 -0.02 1.40 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 6.47 -51.93 -0.34 0.13 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.69 7.93 -51.93 -0.41 0.28 16 30 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.07 0.66 6.47 -51.93 -0.34 0.33 16 32 H 0.07 0.56 6.30 -51.93 -0.33 0.24 16 33 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 35 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.09 1.08 6.13 -51.92 -0.32 0.77 16 37 H 0.10 1.14 7.91 -51.93 -0.41 0.73 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.64 7.00 -51.93 -0.36 1.28 16 40 H 0.10 2.62 6.00 -51.93 -0.31 2.30 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.07 0.93 5.91 -51.93 -0.31 0.62 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -30.65 355.37 -9.07 -39.72 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.14 Total: -1.22 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 0.21 Total: 9.79 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -1.55 Total: -58.42 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.65 -9.07 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113567888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.463 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds