Wall clock time and date at job start Wed Apr 15 2020 11:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 N 1.46905 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.46899 * 110.99577 * 66.04922 * 4 3 2 6 6 C 1.46901 * 110.99914 * 190.00130 * 4 3 2 7 7 C 1.53000 * 109.46705 * 170.00290 * 6 4 3 8 8 C 1.50700 * 109.47003 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99802 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00311 * 179.97438 * 8 7 6 11 11 C 1.47422 * 125.64498 * 359.97438 * 10 8 7 12 12 C 1.54912 * 104.83500 * 155.91583 * 11 10 8 13 13 C 1.55162 * 101.57717 * 37.00946 * 12 11 10 14 14 H 1.09002 * 110.72059 * 82.86237 * 13 12 11 15 15 N 1.46502 * 110.72003 * 205.95874 * 13 12 11 16 16 C 1.36943 * 119.99977 * 271.15847 * 15 13 12 17 17 H 1.07994 * 119.99567 * 359.97438 * 16 15 13 18 18 C 1.38808 * 119.99866 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00443 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47216 * 90.00068 * 20 18 16 22 22 H 1.48496 * 109.47225 * 210.00199 * 20 18 16 23 23 H 1.48505 * 109.47073 * 330.00068 * 20 18 16 24 24 C 1.47018 * 125.65427 * 180.02562 * 10 8 7 25 25 H 1.09004 * 109.47261 * 299.99970 * 1 2 3 26 26 H 1.09001 * 109.47277 * 59.99632 * 1 2 3 27 27 H 1.08997 * 109.47571 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 240.00030 * 2 1 3 29 29 H 1.08996 * 109.47230 * 119.99869 * 2 1 3 30 30 H 1.09001 * 109.47364 * 60.00196 * 3 2 1 31 31 H 1.09000 * 109.47619 * 299.99902 * 3 2 1 32 32 H 1.09006 * 109.47064 * 183.95601 * 5 4 3 33 33 H 1.09005 * 109.47409 * 303.95084 * 5 4 3 34 34 H 1.08998 * 109.47421 * 63.95482 * 5 4 3 35 35 H 1.08988 * 109.47321 * 50.00337 * 6 4 3 36 36 H 1.09000 * 109.46800 * 289.99898 * 6 4 3 37 37 H 1.09006 * 109.47299 * 59.99972 * 7 6 4 38 38 H 1.08992 * 109.47118 * 299.99665 * 7 6 4 39 39 H 1.09003 * 110.37241 * 37.07952 * 11 10 8 40 40 H 1.08998 * 110.46196 * 274.80100 * 11 10 8 41 41 H 1.08999 * 111.00244 * 278.93675 * 12 11 10 42 42 H 1.09004 * 111.03866 * 155.09187 * 12 11 10 43 43 H 0.96999 * 120.00288 * 91.15410 * 15 13 12 44 44 H 0.96997 * 120.00308 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.88087 * 61.59317 * 24 10 8 46 46 H 1.09003 * 109.87911 * 300.43469 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0359 0.8856 -1.2524 6 6 4.0353 2.7932 0.2388 7 6 5.5442 2.7172 0.4803 8 6 6.0843 4.1028 0.7241 9 8 5.3360 5.0572 0.7059 10 7 7.3987 4.2815 0.9623 11 6 8.4154 3.2152 1.0132 12 6 9.7531 3.9269 0.6911 13 6 9.5610 5.2898 1.4073 14 1 9.8060 5.2070 2.4662 15 7 10.3725 6.3295 0.7693 16 6 11.6601 6.5436 1.1835 17 1 12.0771 5.9462 1.9807 18 6 12.4290 7.5283 0.5787 19 7 11.9205 8.2566 -0.3925 20 14 14.1852 7.8208 1.1442 21 1 15.1081 6.9649 0.3560 22 1 14.5393 9.2485 0.9411 23 1 14.3043 7.4813 2.5850 24 6 8.0560 5.5720 1.2155 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 5.1232 0.8322 -1.1975 33 1 3.6303 -0.1147 -1.4044 34 1 3.7451 1.5259 -2.0853 35 1 3.5485 3.2237 1.1138 36 1 3.8377 3.4188 -0.6316 37 1 6.0310 2.2866 -0.3947 38 1 5.7418 2.0916 1.3507 39 1 8.2023 2.4517 0.2650 40 1 8.4521 2.7708 2.0078 41 1 9.8740 4.0638 -0.3835 42 1 10.5979 3.3807 1.1108 43 1 9.9977 6.8662 0.0535 44 1 12.4580 8.9445 -0.8154 45 1 7.6461 6.0261 2.1176 46 1 7.9090 6.2363 0.3639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187276441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:47 Heat of formation + Delta-G solvation = -26.160167 kcal Electronic energy + Delta-G solvation = -22217.427983 eV Core-core repulsion = 18949.033567 eV Total energy + Delta-G solvation = -3268.394416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90365 -38.26488 -37.19872 -34.14256 -33.94381 -31.70347 -30.72726 -29.51372 -27.85155 -27.43828 -25.48181 -23.69304 -22.82547 -21.73348 -20.93398 -20.03570 -18.94388 -17.41934 -17.13627 -16.28989 -15.88285 -15.81997 -14.99480 -14.78398 -14.73876 -14.48489 -13.86910 -13.51291 -13.30013 -13.22839 -13.16117 -12.61990 -12.45508 -12.38161 -12.09298 -12.00948 -11.81336 -11.75542 -11.64445 -11.21255 -11.19857 -11.03820 -10.86740 -10.84421 -10.71171 -10.34315 -10.10108 -9.79088 -9.64239 -8.98507 -8.61474 -8.39641 -7.06273 -5.83654 -3.14487 2.79337 3.07840 3.39762 3.45045 3.46977 3.71640 4.53115 4.56382 4.66521 4.72321 4.78487 4.93228 5.01706 5.05506 5.11047 5.17292 5.28249 5.30840 5.33630 5.41283 5.44702 5.46717 5.54879 5.60616 5.65268 5.72698 5.73962 5.80088 5.81663 5.85391 5.96002 5.97504 6.13335 6.25367 6.37183 6.57083 6.59664 6.77675 6.78977 6.88911 7.63576 7.74417 8.32190 8.34517 9.45065 9.99470 10.34078 11.38507 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.053541 B = 0.002441 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.841091 B =11469.065476 C =11639.196530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.545 5.545 5 C 0.016 3.984 6 C 0.071 3.929 7 C -0.131 4.131 8 C 0.525 3.475 9 O -0.550 6.550 10 N -0.613 5.613 11 C 0.099 3.901 12 C -0.155 4.155 13 C 0.172 3.828 14 H 0.065 0.935 15 N -0.716 5.716 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.100 3.900 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.065 0.935 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 -18.013 0.610 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.269 5.269 5 C -0.132 4.132 6 C -0.057 4.057 7 C -0.171 4.171 8 C 0.313 3.687 9 O -0.428 6.428 10 N -0.347 5.347 11 C -0.025 4.025 12 C -0.197 4.197 13 C 0.060 3.940 14 H 0.083 0.917 15 N -0.356 5.356 16 C -0.376 4.376 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.023 4.023 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.220 0.780 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.665 -17.756 1.057 25.069 hybrid contribution 0.744 0.830 -0.726 1.330 sum -16.921 -16.925 0.331 23.935 Atomic orbital electron populations 1.21741 0.95658 1.01729 1.01846 1.21547 0.95345 0.96374 1.02652 1.22165 0.86904 0.97234 1.01036 1.61983 1.07702 1.22362 1.34855 1.22511 1.00996 0.99880 0.89799 1.21817 0.93646 0.88315 1.01929 1.21577 0.96524 0.94648 1.04357 1.20237 0.80601 0.91182 0.76648 1.90696 1.56692 1.43256 1.52177 1.48504 1.06628 1.09736 1.69807 1.22396 0.88764 0.90393 1.00907 1.23571 0.94458 0.99080 1.02551 1.21184 0.87730 0.88731 0.96383 0.91689 1.42368 1.11768 1.39180 1.42313 1.19217 0.88609 1.14663 1.15101 0.90926 1.24786 0.98673 0.98613 0.98671 1.69665 1.36593 1.24646 1.26842 0.86160 0.84581 0.77163 0.78062 1.21651 1.21727 1.20667 1.22301 0.93876 0.84864 1.01291 0.92598 0.92889 0.92558 0.91995 0.91105 0.90684 0.94831 0.91114 0.91146 0.95549 0.89952 0.93887 0.89088 0.88215 0.91343 0.91542 0.90690 0.90514 0.77959 0.93346 0.91687 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.52 16 2 C -0.12 -0.84 5.86 -26.74 -0.16 -0.99 16 3 C 0.05 0.45 4.96 -3.82 -0.02 0.44 16 4 N -0.55 -5.16 4.76 -242.91 -1.16 -6.31 16 5 C 0.02 0.13 9.13 60.06 0.55 0.68 16 6 C 0.07 0.79 4.25 -3.82 -0.02 0.78 16 7 C -0.13 -1.45 4.63 -27.88 -0.13 -1.58 16 8 C 0.53 8.07 7.85 -10.99 -0.09 7.99 16 9 O -0.55 -10.49 16.31 5.55 0.09 -10.40 16 10 N -0.61 -9.44 3.33 -170.52 -0.57 -10.01 16 11 C 0.10 1.25 6.69 -2.53 -0.02 1.24 16 12 C -0.16 -2.48 6.77 -24.58 -0.17 -2.64 16 13 C 0.17 3.27 3.59 -66.10 -0.24 3.03 16 14 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 15 N -0.72 -17.44 5.24 -51.65 -0.27 -17.72 16 16 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.10 1.80 6.62 -3.07 -0.02 1.78 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.41 6.47 -51.93 -0.34 0.08 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 31 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 32 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 33 H 0.07 0.49 6.30 -51.93 -0.33 0.17 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.98 7.89 -51.94 -0.41 0.57 16 36 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.09 0.89 6.26 -51.93 -0.33 0.57 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.39 10.15 7.55 -40.82 -0.31 9.84 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.13 365.22 -9.16 -40.29 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.28 Total: 5.69 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.18 Total: 3.05 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -1.27 Total: -61.02 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.13 -9.16 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187276441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.128 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds