Wall clock time and date at job start Wed Apr 15 2020 11:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 N 1.46905 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.46899 * 110.99577 * 66.04922 * 4 3 2 6 6 C 1.46901 * 110.99914 * 190.00130 * 4 3 2 7 7 C 1.53000 * 109.46705 * 170.00290 * 6 4 3 8 8 C 1.50700 * 109.47003 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99802 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00311 * 179.97438 * 8 7 6 11 11 C 1.47422 * 125.64498 * 359.97438 * 10 8 7 12 12 C 1.54912 * 104.83500 * 155.91583 * 11 10 8 13 13 C 1.55162 * 101.57717 * 37.00946 * 12 11 10 14 14 H 1.09002 * 110.72059 * 82.86237 * 13 12 11 15 15 N 1.46502 * 110.72003 * 205.95874 * 13 12 11 16 16 C 1.36943 * 119.99977 * 271.15847 * 15 13 12 17 17 H 1.07994 * 119.99567 * 359.97438 * 16 15 13 18 18 C 1.38808 * 119.99866 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00443 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47216 * 90.00068 * 20 18 16 22 22 H 1.48496 * 109.47225 * 210.00199 * 20 18 16 23 23 H 1.48505 * 109.47073 * 330.00068 * 20 18 16 24 24 C 1.47018 * 125.65427 * 180.02562 * 10 8 7 25 25 H 1.09004 * 109.47261 * 299.99970 * 1 2 3 26 26 H 1.09001 * 109.47277 * 59.99632 * 1 2 3 27 27 H 1.08997 * 109.47571 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 240.00030 * 2 1 3 29 29 H 1.08996 * 109.47230 * 119.99869 * 2 1 3 30 30 H 1.09001 * 109.47364 * 60.00196 * 3 2 1 31 31 H 1.09000 * 109.47619 * 299.99902 * 3 2 1 32 32 H 1.09006 * 109.47064 * 183.95601 * 5 4 3 33 33 H 1.09005 * 109.47409 * 303.95084 * 5 4 3 34 34 H 1.08998 * 109.47421 * 63.95482 * 5 4 3 35 35 H 1.08988 * 109.47321 * 50.00337 * 6 4 3 36 36 H 1.09000 * 109.46800 * 289.99898 * 6 4 3 37 37 H 1.09006 * 109.47299 * 59.99972 * 7 6 4 38 38 H 1.08992 * 109.47118 * 299.99665 * 7 6 4 39 39 H 1.09003 * 110.37241 * 37.07952 * 11 10 8 40 40 H 1.08998 * 110.46196 * 274.80100 * 11 10 8 41 41 H 1.08999 * 111.00244 * 278.93675 * 12 11 10 42 42 H 1.09004 * 111.03866 * 155.09187 * 12 11 10 43 43 H 0.96999 * 120.00288 * 91.15410 * 15 13 12 44 44 H 0.96997 * 120.00308 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.88087 * 61.59317 * 24 10 8 46 46 H 1.09003 * 109.87911 * 300.43469 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0359 0.8856 -1.2524 6 6 4.0353 2.7932 0.2388 7 6 5.5442 2.7172 0.4803 8 6 6.0843 4.1028 0.7241 9 8 5.3360 5.0572 0.7059 10 7 7.3987 4.2815 0.9623 11 6 8.4154 3.2152 1.0132 12 6 9.7531 3.9269 0.6911 13 6 9.5610 5.2898 1.4073 14 1 9.8060 5.2070 2.4662 15 7 10.3725 6.3295 0.7693 16 6 11.6601 6.5436 1.1835 17 1 12.0771 5.9462 1.9807 18 6 12.4290 7.5283 0.5787 19 7 11.9205 8.2566 -0.3925 20 14 14.1852 7.8208 1.1442 21 1 15.1081 6.9649 0.3560 22 1 14.5393 9.2485 0.9411 23 1 14.3043 7.4813 2.5850 24 6 8.0560 5.5720 1.2155 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 5.1232 0.8322 -1.1975 33 1 3.6303 -0.1147 -1.4044 34 1 3.7451 1.5259 -2.0853 35 1 3.5485 3.2237 1.1138 36 1 3.8377 3.4188 -0.6316 37 1 6.0310 2.2866 -0.3947 38 1 5.7418 2.0916 1.3507 39 1 8.2023 2.4517 0.2650 40 1 8.4521 2.7708 2.0078 41 1 9.8740 4.0638 -0.3835 42 1 10.5979 3.3807 1.1108 43 1 9.9977 6.8662 0.0535 44 1 12.4580 8.9445 -0.8154 45 1 7.6461 6.0261 2.1176 46 1 7.9090 6.2363 0.3639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187276441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:46 Heat of formation + Delta-G solvation = -47.308615 kcal Electronic energy + Delta-G solvation = -22218.345048 eV Core-core repulsion = 18949.033567 eV Total energy + Delta-G solvation = -3269.311482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14572 -39.18084 -38.44409 -35.92290 -34.63144 -33.37207 -31.79518 -30.91891 -29.30469 -28.10465 -26.48132 -25.38147 -24.09766 -22.57903 -21.62678 -21.51198 -20.11601 -19.34599 -18.28341 -17.46833 -16.93478 -16.71302 -16.49373 -15.87283 -15.76760 -15.49554 -15.24101 -15.04050 -14.55493 -14.40043 -13.98281 -13.78010 -13.65205 -13.29355 -13.14498 -13.01870 -12.95581 -12.80298 -12.66842 -12.65780 -12.42726 -12.32045 -12.13797 -11.90830 -11.80634 -11.72567 -11.65806 -11.41547 -10.95003 -10.93559 -9.69088 -9.36688 -9.05178 -7.95270 -5.25854 1.49189 1.50907 1.59074 1.59324 1.90429 2.56798 2.91210 3.36476 3.60235 3.76818 3.84221 3.88931 4.01465 4.08316 4.13655 4.18766 4.28566 4.42036 4.44379 4.49571 4.53011 4.55225 4.57718 4.68815 4.72406 4.83469 4.85459 4.87828 4.94422 4.96337 5.02693 5.08918 5.20474 5.23297 5.27533 5.31806 5.43502 5.44960 5.53756 6.01719 6.08583 6.25115 6.54377 7.10966 7.31311 8.03336 8.26850 9.28279 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.053541 B = 0.002441 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.841091 B =11469.065476 C =11639.196530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.052 3.948 4 N -0.544 5.544 5 C 0.013 3.987 6 C 0.076 3.924 7 C -0.116 4.116 8 C 0.520 3.480 9 O -0.595 6.595 10 N -0.614 5.614 11 C 0.106 3.894 12 C -0.146 4.146 13 C 0.165 3.835 14 H 0.071 0.929 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.085 0.915 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.976 3.024 21 H -0.286 1.286 22 H -0.300 1.300 23 H -0.266 1.266 24 C 0.108 3.892 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.060 0.940 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.425 -21.170 1.488 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.076 4.076 4 N -0.268 5.268 5 C -0.134 4.134 6 C -0.053 4.053 7 C -0.155 4.155 8 C 0.311 3.689 9 O -0.477 6.477 10 N -0.347 5.347 11 C -0.016 4.016 12 C -0.187 4.187 13 C 0.055 3.945 14 H 0.089 0.911 15 N -0.372 5.372 16 C -0.370 4.370 17 H 0.103 0.897 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.805 3.195 21 H -0.213 1.213 22 H -0.227 1.227 23 H -0.191 1.191 24 C -0.016 4.016 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.576 -20.998 1.970 27.453 hybrid contribution 0.616 1.772 -0.975 2.114 sum -16.959 -19.226 0.996 25.656 Atomic orbital electron populations 1.21733 0.94948 1.02325 1.01840 1.21497 0.95920 0.95099 1.02755 1.22232 0.86428 0.98317 1.00629 1.62032 1.08248 1.20859 1.35650 1.22601 1.01615 1.00336 0.88885 1.21688 0.93944 0.89059 1.00575 1.21546 0.96064 0.91744 1.06189 1.21070 0.80037 0.92464 0.75367 1.90680 1.57787 1.45151 1.54044 1.48598 1.07271 1.09260 1.69577 1.22565 0.85605 0.89672 1.03725 1.23374 0.97202 0.97229 1.00880 1.21397 0.87456 0.89044 0.96598 0.91075 1.42562 1.11762 1.40512 1.42327 1.19651 0.89405 1.13672 1.14258 0.89719 1.25630 1.02790 0.99195 0.99447 1.69838 1.37964 1.25724 1.28738 0.85097 0.79859 0.76252 0.78268 1.21297 1.22730 1.19074 1.21983 0.93659 0.86137 0.99858 0.92651 0.92902 0.91648 0.91505 0.91271 0.91110 0.95326 0.90196 0.89741 0.96186 0.91225 0.95884 0.86930 0.85838 0.87914 0.88584 0.92630 0.89097 0.79719 0.94098 0.92208 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.11 -1.37 5.86 30.59 0.18 -1.19 16 3 C 0.05 0.80 4.96 86.30 0.43 1.23 16 4 N -0.54 -9.24 4.76 -922.44 -4.39 -13.63 16 5 C 0.01 0.19 9.13 127.69 1.17 1.35 16 6 C 0.08 1.61 4.25 86.30 0.37 1.97 16 7 C -0.12 -2.24 4.63 29.85 0.14 -2.10 16 8 C 0.52 15.35 7.85 87.66 0.69 16.04 16 9 O -0.60 -23.04 16.31 -3.04 -0.05 -23.09 16 10 N -0.61 -17.90 3.33 -811.81 -2.70 -20.60 16 11 C 0.11 2.29 6.69 86.86 0.58 2.87 16 12 C -0.15 -4.34 6.77 31.99 0.22 -4.12 16 13 C 0.16 6.16 3.59 46.18 0.17 6.33 16 14 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 15 N -0.73 -36.18 5.24 -317.33 -1.66 -37.84 16 16 C -0.24 -12.76 9.97 84.03 0.84 -11.93 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 19 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 20 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 C 0.11 3.91 6.62 86.73 0.57 4.49 16 25 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.74 6.47 -2.38 -0.02 0.72 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.15 7.93 -2.39 -0.02 1.13 16 31 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 32 H 0.08 0.96 6.47 -2.38 -0.02 0.94 16 33 H 0.08 0.94 6.30 -2.38 -0.02 0.93 16 34 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.07 1.64 7.89 -2.39 -0.02 1.62 16 36 H 0.02 0.57 8.08 -2.39 -0.02 0.55 16 37 H 0.11 1.75 6.26 -2.38 -0.01 1.74 16 38 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 1.61 7.48 -2.39 -0.02 1.60 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 43 H 0.37 20.29 7.55 -92.71 -0.70 19.59 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.04 1.73 7.71 -2.39 -0.02 1.71 16 Total: -1.00 -69.27 365.22 0.27 -69.01 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.24 Total: 27.94 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.52 Total: 10.15 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -8.47 Total: -131.31 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.27 0.27 -69.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187276441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.700 kcal (2) G-P(sol) polarization free energy of solvation -69.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds