Wall clock time and date at job start Wed Apr 15 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 N 1.46907 * 109.47230 * 179.97438 * 3 2 1 5 5 C 1.46899 * 110.99899 * 293.95646 * 4 3 2 6 6 C 1.46892 * 111.00188 * 170.00145 * 4 3 2 7 7 C 1.50701 * 109.47478 * 190.00270 * 6 4 3 8 8 O 1.21278 * 119.99350 * 359.97438 * 7 6 4 9 9 N 1.34766 * 120.00456 * 180.02562 * 7 6 4 10 10 C 1.47027 * 125.64888 * 0.02562 * 9 7 6 11 11 C 1.54321 * 107.27188 * 181.02560 * 10 9 7 12 12 C 1.55153 * 102.94280 * 22.19292 * 11 10 9 13 13 H 1.09000 * 111.00333 * 82.57355 * 12 11 10 14 14 N 1.46503 * 111.00579 * 206.38626 * 12 11 10 15 15 C 1.46494 * 120.00031 * 58.54559 * 14 12 11 16 16 C 1.36940 * 120.00039 * 238.54769 * 14 12 11 17 17 H 1.08004 * 120.00059 * 23.30095 * 16 14 12 18 18 C 1.38810 * 120.00037 * 203.29175 * 16 14 12 19 19 N 1.31617 * 119.99710 * 13.97172 * 18 16 14 20 20 Si 1.86798 * 120.00090 * 193.96093 * 18 16 14 21 21 H 1.48508 * 109.46589 * 90.00418 * 20 18 16 22 22 H 1.48498 * 109.47412 * 210.00316 * 20 18 16 23 23 H 1.48494 * 109.47079 * 330.00827 * 20 18 16 24 24 C 1.47426 * 125.65125 * 179.71506 * 9 7 6 25 25 H 1.09001 * 109.46879 * 60.00395 * 1 2 3 26 26 H 1.08999 * 109.46569 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47180 * 299.99878 * 1 2 3 28 28 H 1.08996 * 109.47393 * 240.00492 * 2 1 3 29 29 H 1.09000 * 109.47386 * 119.99742 * 2 1 3 30 30 H 1.09002 * 109.47136 * 60.00095 * 3 2 1 31 31 H 1.08991 * 109.47505 * 300.00157 * 3 2 1 32 32 H 1.09004 * 109.47158 * 59.99789 * 5 4 3 33 33 H 1.08996 * 109.47092 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47382 * 299.99679 * 5 4 3 35 35 H 1.09005 * 109.47143 * 310.00449 * 6 4 3 36 36 H 1.08996 * 109.47438 * 69.99979 * 6 4 3 37 37 H 1.08997 * 109.88496 * 300.44462 * 10 9 7 38 38 H 1.09000 * 109.87965 * 61.45590 * 10 9 7 39 39 H 1.09000 * 110.72118 * 140.55668 * 11 10 9 40 40 H 1.09003 * 110.71823 * 263.65552 * 11 10 9 41 41 H 1.09004 * 109.47076 * 95.16991 * 15 14 12 42 42 H 1.09000 * 109.47705 * 215.17055 * 15 14 12 43 43 H 1.09000 * 109.47234 * 335.16960 * 15 14 12 44 44 H 0.96997 * 119.99844 * 179.97438 * 19 18 16 45 45 H 1.08993 * 110.36669 * 274.74765 * 24 9 7 46 46 H 1.09007 * 110.36592 * 37.06721 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0349 0.8860 1.2542 6 6 4.0355 2.7931 -0.2375 7 6 5.5219 2.7184 -0.4742 8 8 6.0870 1.6457 -0.4468 9 7 6.2233 3.8436 -0.7154 10 6 5.6677 5.2036 -0.7749 11 6 6.8333 6.1609 -1.1010 12 6 7.8768 5.2243 -1.7652 13 1 7.6509 5.0741 -2.8209 14 7 9.2353 5.7441 -1.5905 15 6 9.7660 5.9692 -0.2437 16 6 10.0091 6.0197 -2.6862 17 1 9.5432 6.2220 -3.6393 18 6 11.3924 6.0393 -2.5719 19 7 11.9716 5.5323 -1.5043 20 14 12.4317 6.7848 -3.9333 21 1 12.6374 8.2306 -3.6635 22 1 13.7476 6.0985 -3.9837 23 1 11.7362 6.6181 -5.2346 24 6 7.6759 3.9156 -0.9569 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.6854 -0.1398 1.3711 33 1 5.1245 0.8974 1.2279 34 1 3.6851 1.4869 2.0936 35 1 3.5493 3.2235 -1.1130 36 1 3.8372 3.4191 0.6326 37 1 4.9109 5.2609 -1.5572 38 1 5.2271 5.4664 0.1868 39 1 6.5125 6.9360 -1.7970 40 1 7.2342 6.6047 -0.1897 41 1 10.3412 5.0982 0.0703 42 1 10.4110 6.8478 -0.2494 43 1 8.9406 6.1289 0.4500 44 1 12.9382 5.5456 -1.4245 45 1 8.2156 3.9643 -0.0112 46 1 8.0066 3.0557 -1.5396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193622322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:49 Heat of formation + Delta-G solvation = -1.044373 kcal Electronic energy + Delta-G solvation = -22937.493100 eV Core-core repulsion = 19670.187786 eV Total energy + Delta-G solvation = -3267.305313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.90495 -38.07505 -36.84263 -34.78758 -33.35906 -31.69870 -29.85959 -28.86122 -27.36651 -27.04940 -26.05919 -24.01232 -22.70156 -22.25762 -20.93482 -19.32007 -18.86846 -17.06116 -17.00798 -16.14684 -15.72792 -15.59310 -15.15448 -14.86323 -14.33310 -13.96675 -13.86620 -13.37683 -13.23696 -13.03913 -12.69401 -12.49820 -12.34124 -12.23815 -12.04236 -11.91287 -11.83407 -11.53449 -11.36402 -11.28675 -10.91468 -10.81943 -10.78581 -10.51513 -10.47650 -10.27426 -9.90375 -9.84383 -9.48085 -8.60621 -8.44517 -8.26210 -6.81486 -5.77356 -3.25416 2.88101 3.09520 3.36762 3.43166 3.44692 3.87406 4.45391 4.62054 4.69604 4.79041 5.00177 5.02433 5.10466 5.17554 5.22672 5.28221 5.31668 5.34019 5.43377 5.49141 5.53892 5.57131 5.62764 5.75754 5.80441 5.88736 5.90951 5.99808 6.01398 6.13906 6.31125 6.38507 6.55259 6.62049 6.74918 6.82712 6.88340 6.93349 7.30419 7.68352 7.76933 7.85690 8.33909 8.47631 9.17316 9.79739 10.28680 11.26986 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.040463 B = 0.002951 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.825668 B = 9487.343717 C = 9584.848223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.526 5.526 5 C 0.017 3.983 6 C 0.042 3.958 7 C 0.524 3.476 8 O -0.528 6.528 9 N -0.617 5.617 10 C 0.104 3.896 11 C -0.154 4.154 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.584 5.584 15 C 0.158 3.842 16 C -0.262 4.262 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.089 3.911 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.018 0.982 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.042 0.958 43 H 0.002 0.998 44 H 0.254 0.746 45 H 0.066 0.934 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.728 -3.694 4.909 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.250 5.250 5 C -0.130 4.130 6 C -0.089 4.089 7 C 0.312 3.688 8 O -0.404 6.404 9 N -0.352 5.352 10 C -0.020 4.020 11 C -0.194 4.194 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.305 5.305 15 C 0.014 3.986 16 C -0.391 4.391 17 H 0.088 0.912 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.035 4.035 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.073 -4.641 4.597 21.109 hybrid contribution 0.343 0.988 0.072 1.048 sum -19.730 -3.653 4.669 20.601 Atomic orbital electron populations 1.21739 0.95655 1.01759 1.01688 1.21534 0.95173 0.96280 1.02988 1.22207 0.86770 0.97579 1.00683 1.61625 1.06986 1.20130 1.36281 1.22595 1.02947 0.99430 0.88062 1.21939 0.93478 0.91139 1.02376 1.20058 0.88555 0.82986 0.77230 1.90666 1.71341 1.27653 1.50775 1.48569 1.10159 1.06229 1.70252 1.22020 0.97324 0.82281 1.00360 1.23207 0.95785 0.98105 1.02274 1.21505 0.86113 0.89100 0.97041 0.90356 1.43861 1.10267 1.72870 1.03477 1.20812 0.93776 1.00410 0.83598 1.19217 0.87787 1.42025 0.90080 0.91185 1.25071 0.96978 0.99715 0.97668 1.70070 1.09206 1.46627 1.28793 0.86213 0.79795 0.78792 0.81467 1.21437 1.21717 1.20406 1.23107 0.78278 1.01337 1.00809 0.92653 0.92534 0.92944 0.90943 0.91868 0.94962 0.90784 0.91260 0.89282 0.96343 0.88140 0.92251 0.91937 0.92308 0.90611 0.90553 0.94854 0.93956 0.97930 0.93595 0.91537 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -1.03 5.86 -26.73 -0.16 -1.18 16 3 C 0.06 0.51 4.96 -3.82 -0.02 0.49 16 4 N -0.53 -6.47 4.50 -244.37 -1.10 -7.57 16 5 C 0.02 0.21 8.96 60.06 0.54 0.75 16 6 C 0.04 0.50 4.64 -4.98 -0.02 0.48 16 7 C 0.52 8.53 7.54 -10.99 -0.08 8.45 16 8 O -0.53 -10.63 14.59 5.56 0.08 -10.55 16 9 N -0.62 -9.94 3.32 -170.38 -0.57 -10.51 16 10 C 0.10 1.33 6.48 -3.06 -0.02 1.31 16 11 C -0.15 -2.36 6.48 -24.90 -0.16 -2.52 16 12 C 0.17 3.41 3.55 -65.66 -0.23 3.18 16 13 H 0.08 1.57 7.95 -51.93 -0.41 1.16 16 14 N -0.58 -14.15 2.96 -170.90 -0.51 -14.65 16 15 C 0.16 3.77 7.60 59.84 0.45 4.23 16 16 C -0.26 -7.01 9.60 -15.06 -0.14 -7.15 16 17 H 0.07 1.83 7.86 -52.48 -0.41 1.41 16 18 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 19 N -0.90 -26.04 10.78 55.49 0.60 -25.44 16 20 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.09 1.73 6.47 -2.41 -0.02 1.71 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.54 6.55 -51.93 -0.34 0.20 16 30 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 32 H 0.07 0.75 6.47 -51.93 -0.34 0.42 16 33 H 0.09 1.34 5.82 -51.93 -0.30 1.03 16 34 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 1.02 7.93 -51.93 -0.41 0.61 16 36 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.23 6.38 -51.93 -0.33 0.89 16 41 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 42 H 0.04 1.08 7.39 -51.93 -0.38 0.70 16 43 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.07 1.38 7.06 -51.93 -0.37 1.02 16 46 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -31.07 356.92 -8.92 -39.99 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.20 Total: -2.36 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 0.42 Total: 9.16 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -1.57 Total: -58.17 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.07 -8.92 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193622322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.950 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds