Wall clock time and date at job start Wed Apr 15 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 N 1.46907 * 109.47230 * 179.97438 * 3 2 1 5 5 C 1.46899 * 110.99899 * 293.95646 * 4 3 2 6 6 C 1.46892 * 111.00188 * 170.00145 * 4 3 2 7 7 C 1.50701 * 109.47478 * 190.00270 * 6 4 3 8 8 O 1.21278 * 119.99350 * 359.97438 * 7 6 4 9 9 N 1.34766 * 120.00456 * 180.02562 * 7 6 4 10 10 C 1.47027 * 125.64888 * 0.02562 * 9 7 6 11 11 C 1.54321 * 107.27188 * 181.02560 * 10 9 7 12 12 C 1.55153 * 102.94280 * 22.19292 * 11 10 9 13 13 H 1.09000 * 111.00333 * 82.57355 * 12 11 10 14 14 N 1.46503 * 111.00579 * 206.38626 * 12 11 10 15 15 C 1.46494 * 120.00031 * 58.54559 * 14 12 11 16 16 C 1.36940 * 120.00039 * 238.54769 * 14 12 11 17 17 H 1.08004 * 120.00059 * 23.30095 * 16 14 12 18 18 C 1.38810 * 120.00037 * 203.29175 * 16 14 12 19 19 N 1.31617 * 119.99710 * 13.97172 * 18 16 14 20 20 Si 1.86798 * 120.00090 * 193.96093 * 18 16 14 21 21 H 1.48508 * 109.46589 * 90.00418 * 20 18 16 22 22 H 1.48498 * 109.47412 * 210.00316 * 20 18 16 23 23 H 1.48494 * 109.47079 * 330.00827 * 20 18 16 24 24 C 1.47426 * 125.65125 * 179.71506 * 9 7 6 25 25 H 1.09001 * 109.46879 * 60.00395 * 1 2 3 26 26 H 1.08999 * 109.46569 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47180 * 299.99878 * 1 2 3 28 28 H 1.08996 * 109.47393 * 240.00492 * 2 1 3 29 29 H 1.09000 * 109.47386 * 119.99742 * 2 1 3 30 30 H 1.09002 * 109.47136 * 60.00095 * 3 2 1 31 31 H 1.08991 * 109.47505 * 300.00157 * 3 2 1 32 32 H 1.09004 * 109.47158 * 59.99789 * 5 4 3 33 33 H 1.08996 * 109.47092 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47382 * 299.99679 * 5 4 3 35 35 H 1.09005 * 109.47143 * 310.00449 * 6 4 3 36 36 H 1.08996 * 109.47438 * 69.99979 * 6 4 3 37 37 H 1.08997 * 109.88496 * 300.44462 * 10 9 7 38 38 H 1.09000 * 109.87965 * 61.45590 * 10 9 7 39 39 H 1.09000 * 110.72118 * 140.55668 * 11 10 9 40 40 H 1.09003 * 110.71823 * 263.65552 * 11 10 9 41 41 H 1.09004 * 109.47076 * 95.16991 * 15 14 12 42 42 H 1.09000 * 109.47705 * 215.17055 * 15 14 12 43 43 H 1.09000 * 109.47234 * 335.16960 * 15 14 12 44 44 H 0.96997 * 119.99844 * 179.97438 * 19 18 16 45 45 H 1.08993 * 110.36669 * 274.74765 * 24 9 7 46 46 H 1.09007 * 110.36592 * 37.06721 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0349 0.8860 1.2542 6 6 4.0355 2.7931 -0.2375 7 6 5.5219 2.7184 -0.4742 8 8 6.0870 1.6457 -0.4468 9 7 6.2233 3.8436 -0.7154 10 6 5.6677 5.2036 -0.7749 11 6 6.8333 6.1609 -1.1010 12 6 7.8768 5.2243 -1.7652 13 1 7.6509 5.0741 -2.8209 14 7 9.2353 5.7441 -1.5905 15 6 9.7660 5.9692 -0.2437 16 6 10.0091 6.0197 -2.6862 17 1 9.5432 6.2220 -3.6393 18 6 11.3924 6.0393 -2.5719 19 7 11.9716 5.5323 -1.5043 20 14 12.4317 6.7848 -3.9333 21 1 12.6374 8.2306 -3.6635 22 1 13.7476 6.0985 -3.9837 23 1 11.7362 6.6181 -5.2346 24 6 7.6759 3.9156 -0.9569 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.6854 -0.1398 1.3711 33 1 5.1245 0.8974 1.2279 34 1 3.6851 1.4869 2.0936 35 1 3.5493 3.2235 -1.1130 36 1 3.8372 3.4191 0.6326 37 1 4.9109 5.2609 -1.5572 38 1 5.2271 5.4664 0.1868 39 1 6.5125 6.9360 -1.7970 40 1 7.2342 6.6047 -0.1897 41 1 10.3412 5.0982 0.0703 42 1 10.4110 6.8478 -0.2494 43 1 8.9406 6.1289 0.4500 44 1 12.9382 5.5456 -1.4245 45 1 8.2156 3.9643 -0.0112 46 1 8.0066 3.0557 -1.5396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193622322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:48 Heat of formation + Delta-G solvation = -21.646681 kcal Electronic energy + Delta-G solvation = -22938.386483 eV Core-core repulsion = 19670.187786 eV Total energy + Delta-G solvation = -3268.198697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17097 -39.29244 -38.01008 -36.52405 -34.08750 -33.47906 -31.39342 -30.07142 -28.60103 -28.06558 -27.84612 -25.38286 -24.06751 -23.43472 -21.65483 -20.94905 -20.08871 -18.94979 -18.19258 -17.55143 -16.82980 -16.66346 -16.39129 -16.18408 -15.66552 -15.17227 -14.93269 -14.78291 -14.66372 -14.36530 -14.18870 -13.76052 -13.60374 -13.42676 -13.12313 -12.93825 -12.79240 -12.78128 -12.64552 -12.48007 -12.40213 -12.33677 -12.18414 -12.03859 -11.92907 -11.81728 -11.44166 -11.40620 -10.77112 -10.64980 -9.62908 -9.28269 -8.79951 -7.84534 -5.35008 1.47787 1.48109 1.57446 1.65093 1.89714 2.50840 2.98372 3.27042 3.52052 3.60437 3.93538 3.98495 4.08109 4.14763 4.20512 4.29288 4.30437 4.37300 4.47289 4.49974 4.53106 4.57308 4.70548 4.72508 4.79217 4.85237 4.88408 4.90575 5.02988 5.09541 5.19499 5.24231 5.27339 5.31767 5.32332 5.43891 5.45261 5.64223 5.69360 5.93746 6.12557 6.30783 6.62906 7.12066 7.22212 7.83105 8.27355 9.18113 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.040463 B = 0.002951 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.825668 B = 9487.343717 C = 9584.848223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.058 3.942 4 N -0.551 5.551 5 C 0.023 3.977 6 C 0.053 3.947 7 C 0.517 3.483 8 O -0.578 6.578 9 N -0.617 5.617 10 C 0.107 3.893 11 C -0.140 4.140 12 C 0.165 3.835 13 H 0.073 0.927 14 N -0.601 5.601 15 C 0.177 3.823 16 C -0.266 4.266 17 H 0.076 0.924 18 C -0.054 4.054 19 N -0.938 5.938 20 Si 0.972 3.028 21 H -0.283 1.283 22 H -0.299 1.299 23 H -0.267 1.267 24 C 0.100 3.900 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.071 0.929 41 H -0.001 1.001 42 H 0.017 0.983 43 H 0.036 0.964 44 H 0.248 0.752 45 H 0.046 0.954 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.195 -2.219 4.650 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.069 4.069 4 N -0.275 5.275 5 C -0.125 4.125 6 C -0.078 4.078 7 C 0.306 3.694 8 O -0.457 6.457 9 N -0.351 5.351 10 C -0.015 4.015 11 C -0.179 4.179 12 C 0.056 3.944 13 H 0.091 0.909 14 N -0.322 5.322 15 C 0.032 3.968 16 C -0.396 4.396 17 H 0.094 0.906 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.800 3.200 21 H -0.210 1.210 22 H -0.226 1.226 23 H -0.191 1.191 24 C -0.026 4.026 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.146 0.854 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.017 0.983 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -23.619 -3.143 4.330 24.217 hybrid contribution 1.354 0.461 0.154 1.439 sum -22.265 -2.682 4.484 22.870 Atomic orbital electron populations 1.21698 0.94069 1.02242 1.02334 1.21524 0.96491 0.95904 1.02023 1.22269 0.84627 0.98100 1.01900 1.61580 1.08952 1.20611 1.36391 1.22456 1.00740 1.00365 0.88921 1.21943 0.89621 0.91670 1.04558 1.21019 0.90439 0.82012 0.75882 1.90653 1.72687 1.29592 1.52770 1.48629 1.08452 1.08024 1.70044 1.22251 0.96620 0.79213 1.03435 1.23061 0.94902 0.98066 1.01885 1.21672 0.85115 0.90264 0.97334 0.90870 1.44057 1.11747 1.73573 1.02869 1.20495 0.94144 0.97719 0.84438 1.19589 0.88315 1.40771 0.90952 0.90647 1.25869 0.98296 1.00772 0.99964 1.70249 1.08897 1.48492 1.30789 0.85196 0.77694 0.77797 0.79319 1.20973 1.22568 1.19150 1.22644 0.80944 0.99856 0.99121 0.92085 0.92227 0.92157 0.92476 0.92357 0.93549 0.89524 0.90659 0.92769 0.94750 0.85440 0.89619 0.88494 0.89024 0.88585 0.91043 0.98300 0.96381 0.94524 0.94263 0.93530 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.81 5.86 30.60 0.18 -1.63 16 3 C 0.06 0.88 4.96 86.30 0.43 1.31 16 4 N -0.55 -12.32 4.50 -927.06 -4.17 -16.49 16 5 C 0.02 0.54 8.96 127.69 1.14 1.68 16 6 C 0.05 1.08 4.64 85.56 0.40 1.48 16 7 C 0.52 16.19 7.54 87.66 0.66 16.85 16 8 O -0.58 -23.85 14.59 -3.02 -0.04 -23.89 16 9 N -0.62 -18.87 3.32 -811.36 -2.70 -21.57 16 10 C 0.11 2.27 6.48 86.73 0.56 2.83 16 11 C -0.14 -3.86 6.48 31.78 0.21 -3.65 16 12 C 0.17 6.42 3.55 46.46 0.17 6.58 16 13 H 0.07 2.90 7.95 -2.39 -0.02 2.88 16 14 N -0.60 -29.45 2.96 -694.59 -2.05 -31.50 16 15 C 0.18 8.63 7.60 127.77 0.97 9.60 16 16 C -0.27 -14.40 9.60 84.03 0.81 -13.59 16 17 H 0.08 3.91 7.86 -2.91 -0.02 3.89 16 18 C -0.05 -3.00 5.08 84.86 0.43 -2.57 16 19 N -0.94 -56.09 10.78 21.65 0.23 -55.85 16 20 Si 0.97 44.96 29.58 68.60 2.03 46.99 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 C 0.10 3.97 6.47 86.93 0.56 4.53 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 0.91 6.55 -2.39 -0.02 0.89 16 30 H 0.05 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.09 1.11 7.93 -2.39 -0.02 1.09 16 32 H 0.07 1.60 6.47 -2.39 -0.02 1.58 16 33 H 0.05 1.65 5.82 -2.39 -0.01 1.64 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.13 1.95 7.93 -2.38 -0.02 1.93 16 36 H 0.09 1.35 8.12 -2.39 -0.02 1.34 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 2.07 6.38 -2.39 -0.02 2.06 16 41 H 0.00 -0.07 7.33 -2.39 -0.02 -0.09 16 42 H 0.02 0.93 7.39 -2.39 -0.02 0.91 16 43 H 0.04 1.49 6.34 -2.39 -0.02 1.48 16 44 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.05 2.01 7.06 -2.39 -0.02 2.00 16 46 H 0.04 1.71 8.04 -2.38 -0.02 1.69 16 Total: -1.00 -71.55 356.92 1.45 -70.09 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.93 Total: 9.63 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 7.23 Total: 22.60 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -8.69 Total: -125.41 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.04 Total: -23.89 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.55 1.45 -70.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193622322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.445 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds