Wall clock time and date at job start Wed Apr 15 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47236 * 2 1 4 4 N 1.46901 * 109.47314 * 179.97438 * 3 2 1 5 5 C 1.46900 * 111.00071 * 293.95951 * 4 3 2 6 6 C 1.46898 * 110.99984 * 170.00237 * 4 3 2 7 7 C 1.50704 * 109.46804 * 190.00523 * 6 4 3 8 8 O 1.21279 * 120.00220 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99640 * 180.02562 * 7 6 4 10 10 C 1.47022 * 125.64929 * 359.69135 * 9 7 6 11 11 C 1.54340 * 107.26573 * 178.85153 * 10 9 7 12 12 C 1.55148 * 103.01948 * 338.13758 * 11 10 9 13 13 H 1.09003 * 111.00837 * 277.23291 * 12 11 10 14 14 N 1.46504 * 111.03866 * 153.39597 * 12 11 10 15 15 C 1.46495 * 119.99923 * 307.78635 * 14 12 11 16 16 C 1.36938 * 119.99919 * 127.78409 * 14 12 11 17 17 H 1.07999 * 120.00376 * 23.26475 * 16 14 12 18 18 C 1.38816 * 119.99869 * 203.26449 * 16 14 12 19 19 N 1.31621 * 119.99905 * 13.81977 * 18 16 14 20 20 Si 1.86794 * 119.99765 * 193.81937 * 18 16 14 21 21 H 1.48498 * 109.47552 * 60.00178 * 20 18 16 22 22 H 1.48500 * 109.46862 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47708 * 299.99910 * 20 18 16 24 24 C 1.47425 * 125.64664 * 179.97438 * 9 7 6 25 25 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47049 * 299.99938 * 1 2 3 27 27 H 1.09005 * 109.47108 * 59.99629 * 1 2 3 28 28 H 1.09005 * 109.47378 * 240.00495 * 2 1 3 29 29 H 1.09001 * 109.47519 * 120.00089 * 2 1 3 30 30 H 1.09005 * 109.47051 * 60.00063 * 3 2 1 31 31 H 1.08992 * 109.47130 * 300.00394 * 3 2 1 32 32 H 1.08995 * 109.46955 * 296.04187 * 5 4 3 33 33 H 1.09000 * 109.47143 * 56.04861 * 5 4 3 34 34 H 1.09002 * 109.47000 * 176.04388 * 5 4 3 35 35 H 1.09000 * 109.47023 * 310.00139 * 6 4 3 36 36 H 1.08997 * 109.47367 * 70.00406 * 6 4 3 37 37 H 1.09007 * 109.88040 * 298.39107 * 10 9 7 38 38 H 1.08997 * 109.88792 * 59.56087 * 10 9 7 39 39 H 1.09007 * 110.84721 * 219.67163 * 11 10 9 40 40 H 1.08993 * 110.66749 * 96.52254 * 11 10 9 41 41 H 1.09000 * 109.46895 * 95.15838 * 15 14 12 42 42 H 1.08999 * 109.47295 * 215.15862 * 15 14 12 43 43 H 1.08999 * 109.47013 * 335.16139 * 15 14 12 44 44 H 0.97001 * 119.99710 * 180.02562 * 19 18 16 45 45 H 1.08993 * 110.36643 * 322.92889 * 24 9 7 46 46 H 1.08996 * 110.36552 * 85.25480 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8858 1.2542 6 6 4.0355 2.7931 -0.2374 7 6 5.5219 2.7182 -0.4743 8 8 6.0869 1.6453 -0.4478 9 7 6.2234 3.8435 -0.7154 10 6 5.6666 5.2026 -0.7817 11 6 6.8418 6.1664 -1.0502 12 6 8.0744 5.3580 -0.5664 13 1 8.2005 5.4460 0.5128 14 7 9.2886 5.7787 -1.2700 15 6 9.3091 5.8214 -2.7342 16 6 10.4043 6.1322 -0.5590 17 1 10.5427 5.7642 0.4469 18 6 11.3574 6.9635 -1.1312 19 7 11.0755 7.6281 -2.2318 20 14 13.0400 7.1389 -0.3392 21 1 13.7047 5.8120 -0.2897 22 1 13.8680 8.0772 -1.1388 23 1 12.8854 7.6668 1.0401 24 6 7.6751 3.9147 -0.9623 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.7436 1.5263 2.0866 33 1 3.6293 -0.1145 1.4059 34 1 5.1223 0.8325 1.2000 35 1 3.5493 3.2235 -1.1130 36 1 3.8373 3.4190 0.6326 37 1 4.9399 5.2664 -1.5917 38 1 5.1916 5.4553 0.1662 39 1 6.7310 7.0838 -0.4719 40 1 6.9206 6.3900 -2.1141 41 1 9.0791 6.8321 -3.0715 42 1 10.2980 5.5351 -3.0923 43 1 8.5653 5.1288 -3.1283 44 1 11.7417 8.2087 -2.6319 45 1 8.2016 3.1911 -0.3401 46 1 7.8898 3.7375 -2.0161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193622325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:51 Heat of formation + Delta-G solvation = -20.974890 kcal Electronic energy + Delta-G solvation = -22914.093985 eV Core-core repulsion = 19645.924420 eV Total energy + Delta-G solvation = -3268.169566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17370 -39.29592 -38.00987 -36.52390 -34.08534 -33.47098 -31.40794 -30.07803 -28.60620 -28.05552 -27.84303 -25.37895 -24.06549 -23.44329 -21.64742 -20.94309 -20.09266 -18.95511 -18.19160 -17.56967 -16.83248 -16.66342 -16.41114 -16.07698 -15.71400 -15.09405 -15.00294 -14.89917 -14.62678 -14.38531 -14.14037 -13.86869 -13.57089 -13.43457 -12.95372 -12.93126 -12.80491 -12.77840 -12.61678 -12.48555 -12.41346 -12.35869 -12.14962 -12.11392 -11.92699 -11.84775 -11.43846 -11.43025 -10.78089 -10.64216 -9.63173 -9.28310 -8.79184 -7.84734 -5.34082 1.46502 1.49536 1.55463 1.64977 1.89162 2.50594 2.98494 3.26938 3.52253 3.58570 3.93043 3.98956 4.07673 4.14287 4.19345 4.28882 4.31717 4.36217 4.45799 4.50152 4.54210 4.57526 4.70676 4.71422 4.78459 4.85607 4.89527 4.91025 5.01977 5.10276 5.21595 5.23971 5.26832 5.30171 5.32286 5.43159 5.45335 5.63129 5.69774 5.94107 6.12452 6.30779 6.61576 7.12436 7.21645 7.83083 8.27179 9.17757 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.044540 B = 0.002928 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.491280 B = 9559.209416 C = 9828.401620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.057 3.943 4 N -0.549 5.549 5 C 0.022 3.978 6 C 0.051 3.949 7 C 0.520 3.480 8 O -0.574 6.574 9 N -0.616 5.616 10 C 0.109 3.891 11 C -0.141 4.141 12 C 0.166 3.834 13 H 0.072 0.928 14 N -0.602 5.602 15 C 0.177 3.823 16 C -0.270 4.270 17 H 0.069 0.931 18 C -0.047 4.047 19 N -0.933 5.933 20 Si 0.968 3.032 21 H -0.283 1.283 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.099 3.901 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.014 0.986 42 H 0.011 0.989 43 H 0.028 0.972 44 H 0.250 0.750 45 H 0.049 0.951 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.027 -7.903 4.905 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.274 5.274 5 C -0.126 4.126 6 C -0.080 4.080 7 C 0.309 3.691 8 O -0.454 6.454 9 N -0.351 5.351 10 C -0.013 4.013 11 C -0.181 4.181 12 C 0.057 3.943 13 H 0.090 0.910 14 N -0.323 5.323 15 C 0.033 3.967 16 C -0.400 4.400 17 H 0.087 0.913 18 C -0.243 4.243 19 N -0.578 5.578 20 Si 0.796 3.204 21 H -0.209 1.209 22 H -0.219 1.219 23 H -0.199 1.199 24 C -0.026 4.026 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.032 0.968 42 H 0.030 0.970 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.509 -8.710 4.450 23.629 hybrid contribution 1.346 0.707 0.676 1.664 sum -20.164 -8.003 5.126 22.291 Atomic orbital electron populations 1.21700 0.94141 1.02247 1.02299 1.21526 0.96435 0.95850 1.02083 1.22265 0.84752 0.98126 1.01832 1.61594 1.08863 1.20519 1.36408 1.22482 1.01043 1.00236 0.88854 1.21957 0.89836 0.91689 1.04500 1.20930 0.90319 0.81959 0.75845 1.90646 1.72536 1.29331 1.52842 1.48584 1.08600 1.07849 1.70051 1.22199 0.96260 0.79383 1.03451 1.23044 0.94244 0.98625 1.02187 1.21526 0.86218 0.90637 0.95912 0.90958 1.43963 1.09417 1.76875 1.02084 1.20504 0.96722 0.96902 0.82608 1.19468 0.98029 1.23225 0.99274 0.91350 1.25747 1.02772 0.96929 0.98857 1.70203 1.34298 1.30388 1.22940 0.85342 0.79984 0.77163 0.77938 1.20926 1.21918 1.19896 1.22570 0.80747 0.99502 0.99808 0.92185 0.92210 0.92136 0.92393 0.92262 0.93645 0.89624 0.94953 0.90465 0.92517 0.85636 0.89707 0.88936 0.88838 0.89721 0.91603 0.96751 0.97028 0.95344 0.94129 0.93239 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.12 -1.74 5.87 30.59 0.18 -1.56 16 3 C 0.06 0.85 4.96 86.30 0.43 1.28 16 4 N -0.55 -11.91 4.50 -927.05 -4.17 -16.08 16 5 C 0.02 0.49 9.01 127.69 1.15 1.64 16 6 C 0.05 1.02 4.64 85.56 0.40 1.42 16 7 C 0.52 15.62 7.57 87.66 0.66 16.29 16 8 O -0.57 -22.46 14.57 -3.03 -0.04 -22.50 16 9 N -0.62 -18.27 3.33 -811.79 -2.70 -20.97 16 10 C 0.11 2.44 6.49 86.73 0.56 3.00 16 11 C -0.14 -4.30 6.50 31.79 0.21 -4.10 16 12 C 0.17 6.47 3.53 46.38 0.16 6.64 16 13 H 0.07 2.87 7.96 -2.39 -0.02 2.85 16 14 N -0.60 -29.57 2.96 -695.06 -2.06 -31.62 16 15 C 0.18 8.64 7.57 127.77 0.97 9.60 16 16 C -0.27 -14.68 9.60 84.03 0.81 -13.88 16 17 H 0.07 3.63 7.87 -2.91 -0.02 3.61 16 18 C -0.05 -2.62 5.08 84.86 0.43 -2.19 16 19 N -0.93 -54.21 10.77 21.65 0.23 -53.98 16 20 Si 0.97 44.85 29.58 68.60 2.03 46.88 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 C 0.10 3.69 6.47 86.85 0.56 4.25 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.06 0.89 6.47 -2.39 -0.02 0.87 16 30 H 0.05 0.58 8.12 -2.38 -0.02 0.56 16 31 H 0.09 1.09 7.93 -2.39 -0.02 1.07 16 32 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 1.54 6.30 -2.39 -0.02 1.52 16 34 H 0.06 1.66 5.88 -2.39 -0.01 1.65 16 35 H 0.13 1.92 7.93 -2.39 -0.02 1.90 16 36 H 0.09 1.34 8.12 -2.39 -0.02 1.32 16 37 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.07 2.17 6.99 -2.39 -0.02 2.16 16 41 H 0.01 0.75 7.33 -2.39 -0.02 0.73 16 42 H 0.01 0.59 7.38 -2.39 -0.02 0.58 16 43 H 0.03 1.20 6.38 -2.39 -0.02 1.18 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 46 H 0.05 2.08 6.43 -2.39 -0.02 2.07 16 Total: -1.00 -68.54 356.80 1.45 -67.08 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.93 Total: 9.60 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 7.23 Total: 21.59 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -8.69 Total: -122.65 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.04 Total: -22.50 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.54 1.45 -67.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193622325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.109 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds