Wall clock time and date at job start Wed Apr 15 2020 11:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46537 * 2 1 4 4 N 1.46902 * 109.46808 * 180.02562 * 3 2 1 5 5 C 1.46901 * 111.00082 * 293.95037 * 4 3 2 6 6 C 1.46905 * 110.99691 * 169.99510 * 4 3 2 7 7 C 1.50701 * 109.46755 * 189.99739 * 6 4 3 8 8 O 1.21280 * 120.00362 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99617 * 179.97438 * 7 6 4 10 10 C 1.48216 * 119.96824 * 180.02562 * 9 7 6 11 11 C 1.47135 * 110.33904 * 102.47308 * 10 9 7 12 12 C 1.53789 * 111.84539 * 58.29836 * 11 10 9 13 13 N 1.43465 * 107.95825 * 281.66677 * 12 11 10 14 14 C 1.36944 * 118.93846 * 273.60773 * 13 12 11 15 15 H 1.08000 * 119.99821 * 24.61982 * 14 13 12 16 16 C 1.38810 * 120.00048 * 204.62585 * 14 13 12 17 17 N 1.31621 * 119.99786 * 203.00943 * 16 14 13 18 18 Si 1.86800 * 120.00203 * 22.99989 * 16 14 13 19 19 H 1.48500 * 109.47578 * 265.75135 * 18 16 14 20 20 H 1.48499 * 109.47109 * 145.74548 * 18 16 14 21 21 H 1.48507 * 109.46961 * 25.74996 * 18 16 14 22 22 C 1.48859 * 122.12251 * 93.88897 * 13 12 11 23 23 C 1.43619 * 119.96856 * 359.97438 * 9 7 6 24 24 H 1.08993 * 109.47417 * 60.00872 * 1 2 3 25 25 H 1.09002 * 109.46760 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47618 * 299.99857 * 1 2 3 27 27 H 1.08992 * 109.47145 * 240.00147 * 2 1 3 28 28 H 1.09002 * 109.47313 * 119.99293 * 2 1 3 29 29 H 1.08991 * 109.47338 * 59.99445 * 3 2 1 30 30 H 1.09002 * 109.46742 * 299.99643 * 3 2 1 31 31 H 1.08994 * 109.46845 * 296.04900 * 5 4 3 32 32 H 1.08994 * 109.46757 * 56.04795 * 5 4 3 33 33 H 1.09001 * 109.46711 * 176.04577 * 5 4 3 34 34 H 1.09002 * 109.46635 * 70.00100 * 6 4 3 35 35 H 1.08994 * 109.47230 * 310.00323 * 6 4 3 36 36 H 1.09000 * 109.32286 * 342.20746 * 10 9 7 37 37 H 1.08998 * 109.18266 * 222.65057 * 10 9 7 38 38 H 1.09001 * 109.00609 * 297.68712 * 11 10 9 39 39 H 1.09000 * 108.94345 * 178.86685 * 11 10 9 40 40 H 1.08997 * 109.76815 * 162.04808 * 12 11 10 41 41 H 1.09006 * 109.80641 * 41.30189 * 12 11 10 42 42 H 0.96998 * 119.99910 * 5.15283 * 17 16 14 43 43 H 1.08995 * 109.48053 * 80.34635 * 22 13 12 44 44 H 1.09000 * 109.48016 * 200.38205 * 22 13 12 45 45 H 1.08996 * 108.87916 * 31.46861 * 23 9 7 46 46 H 1.09004 * 108.87092 * 150.00564 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 -0.0006 5 6 4.0359 0.8858 1.2524 6 6 4.0351 2.7934 -0.2389 7 6 5.5213 2.7186 -0.4768 8 8 6.0865 1.6459 -0.4509 9 7 6.2224 3.8440 -0.7194 10 6 7.6840 3.7697 -0.9539 11 6 7.9783 3.8918 -2.3903 12 6 7.4399 5.2084 -2.9749 13 7 6.0288 5.0555 -3.1833 14 6 5.5880 4.5082 -4.3587 15 1 6.2335 3.8530 -4.9248 16 6 4.3117 4.7957 -4.8226 17 7 3.7135 3.9717 -5.6566 18 14 3.4430 6.3519 -4.2630 19 1 2.5816 6.0446 -3.0930 20 1 2.6046 6.8764 -5.3708 21 1 4.4522 7.3719 -3.8803 22 6 5.0280 5.4782 -2.1656 23 6 5.5522 5.1138 -0.7515 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.6765 1.9564 0.8899 30 1 1.6765 1.9563 -0.8901 31 1 3.7451 1.5261 2.0852 32 1 3.6304 -0.1144 1.4043 33 1 5.1232 0.8326 1.1973 34 1 3.8375 3.4190 0.6315 35 1 3.5482 3.2239 -1.1139 36 1 8.0597 2.8139 -0.5886 37 1 8.1748 4.5800 -0.4149 38 1 7.5209 3.0554 -2.9188 39 1 9.0581 3.8546 -2.5346 40 1 7.9321 5.4187 -3.9244 41 1 7.6230 6.0249 -2.2762 42 1 4.1322 3.1281 -5.8887 43 1 4.8732 6.5549 -2.2334 44 1 4.0848 4.9630 -2.3475 45 1 4.7101 5.0857 -0.0601 46 1 6.2479 5.8879 -0.4279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197907380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:00 Heat of formation + Delta-G solvation = 3.029271 kcal Electronic energy + Delta-G solvation = -24422.163014 eV Core-core repulsion = 21155.034346 eV Total energy + Delta-G solvation = -3267.128667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98071 -37.80920 -36.66769 -34.33920 -33.30825 -32.69331 -31.39644 -28.44940 -27.44300 -26.90218 -25.75377 -23.46815 -23.12704 -21.75209 -20.64712 -19.84264 -18.56869 -17.43648 -16.74630 -16.03203 -15.78738 -15.46696 -14.90295 -14.82699 -14.37995 -14.12475 -13.74432 -13.73920 -13.28673 -12.98698 -12.86468 -12.58272 -12.37963 -12.26006 -11.97850 -11.72263 -11.61704 -11.59013 -11.38739 -11.17195 -11.03003 -10.95238 -10.52067 -10.39999 -10.28991 -9.99952 -9.72978 -9.28176 -9.17539 -8.52882 -8.18063 -8.09918 -6.95790 -6.30149 -3.26799 3.03244 3.33847 3.35253 3.50347 3.64383 4.10288 4.59158 4.84058 4.88973 4.96264 5.05645 5.25763 5.29425 5.38179 5.38639 5.45118 5.47881 5.53888 5.57569 5.63453 5.68157 5.76675 5.80750 5.82095 5.85708 5.88260 6.00932 6.04713 6.17347 6.23249 6.28853 6.31971 6.35674 6.44676 6.50515 6.71314 6.89252 7.06988 7.14140 7.21318 7.86983 8.08051 8.47285 8.66127 9.06154 9.67621 10.15432 11.14651 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.006818 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.555508 B = 4105.815331 C = 5388.568417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.054 3.946 4 N -0.523 5.523 5 C 0.019 3.981 6 C 0.038 3.962 7 C 0.525 3.475 8 O -0.534 6.534 9 N -0.590 5.590 10 C 0.132 3.868 11 C -0.169 4.169 12 C 0.163 3.837 13 N -0.597 5.597 14 C -0.345 4.345 15 H 0.066 0.934 16 C -0.013 4.013 17 N -0.917 5.917 18 Si 1.053 2.947 19 H -0.297 1.297 20 H -0.301 1.301 21 H -0.286 1.286 22 C 0.101 3.899 23 C 0.093 3.907 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.015 0.985 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -0.101 15.114 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.073 4.073 4 N -0.247 5.247 5 C -0.129 4.129 6 C -0.093 4.093 7 C 0.313 3.687 8 O -0.411 6.411 9 N -0.322 5.322 10 C 0.010 3.990 11 C -0.210 4.210 12 C 0.035 3.965 13 N -0.320 5.320 14 C -0.473 4.473 15 H 0.084 0.916 16 C -0.214 4.214 17 N -0.556 5.556 18 Si 0.885 3.115 19 H -0.225 1.225 20 H -0.229 1.229 21 H -0.213 1.213 22 C -0.026 4.026 23 C -0.034 4.034 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.228 -0.066 14.529 14.581 hybrid contribution 1.024 -0.246 0.727 1.280 sum -0.205 -0.313 15.256 15.260 Atomic orbital electron populations 1.21736 0.95705 1.01597 1.01791 1.21524 0.95176 0.96346 1.02767 1.22214 0.86708 0.97534 1.00870 1.61571 1.07065 1.20387 1.35654 1.22585 1.02821 0.99133 0.88355 1.22051 0.93823 0.90883 1.02513 1.20295 0.88751 0.83600 0.76055 1.90592 1.71147 1.27913 1.51455 1.47361 1.08381 1.06549 1.69930 1.20538 0.79497 1.01901 0.97027 1.21824 0.99641 1.03199 0.96312 1.20318 0.85295 0.92919 0.97960 1.43899 0.99798 1.72771 1.15531 1.20222 1.01539 1.25751 0.99806 0.91602 1.26102 0.94592 1.03605 0.97091 1.70820 1.38329 1.09959 1.36503 0.84037 0.75274 0.77447 0.74728 1.22539 1.22877 1.21267 1.22683 0.94175 0.97865 0.87850 1.21869 0.97252 0.85587 0.98644 0.92408 0.92661 0.93078 0.90873 0.92128 0.95142 0.90381 0.96694 0.91464 0.89508 0.92598 0.87376 0.90350 0.92153 0.91103 0.92551 0.93091 0.94756 0.92541 0.94219 0.91125 0.91286 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.45 5.86 -26.73 -0.16 -1.61 16 3 C 0.05 0.74 4.96 -3.82 -0.02 0.72 16 4 N -0.52 -8.43 4.50 -244.37 -1.10 -9.53 16 5 C 0.02 0.27 9.01 60.07 0.54 0.81 16 6 C 0.04 0.63 4.00 -4.97 -0.02 0.61 16 7 C 0.53 9.90 7.40 -10.98 -0.08 9.82 16 8 O -0.53 -11.52 13.75 5.56 0.08 -11.44 16 9 N -0.59 -10.25 2.46 -176.48 -0.43 -10.68 16 10 C 0.13 2.14 5.70 -5.91 -0.03 2.11 16 11 C -0.17 -3.04 5.64 -29.14 -0.16 -3.21 16 12 C 0.16 3.17 5.63 -5.24 -0.03 3.14 16 13 N -0.60 -13.74 2.33 -171.82 -0.40 -14.14 16 14 C -0.34 -9.55 9.55 -15.06 -0.14 -9.69 16 15 H 0.07 2.01 8.06 -52.49 -0.42 1.58 16 16 C -0.01 -0.36 5.14 -17.43 -0.09 -0.45 16 17 N -0.92 -28.36 13.70 55.49 0.76 -27.60 16 18 Si 1.05 25.42 24.43 -169.99 -4.15 21.26 16 19 H -0.30 -6.62 6.75 56.52 0.38 -6.24 16 20 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.29 -6.50 6.41 56.52 0.36 -6.14 16 22 C 0.10 2.02 4.54 -1.60 -0.01 2.01 16 23 C 0.09 1.46 5.05 -4.43 -0.02 1.43 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 29 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.08 1.13 7.93 -51.93 -0.41 0.71 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 33 H 0.09 1.41 5.88 -51.93 -0.31 1.11 16 34 H 0.06 0.76 7.35 -51.93 -0.38 0.38 16 35 H 0.11 1.94 7.13 -51.93 -0.37 1.57 16 36 H 0.08 1.32 7.12 -51.93 -0.37 0.95 16 37 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.07 1.59 7.91 -51.93 -0.41 1.18 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 41 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 42 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 43 H 0.04 0.78 5.81 -51.93 -0.30 0.48 16 44 H 0.07 1.56 4.74 -51.93 -0.25 1.31 16 45 H 0.07 0.91 6.38 -51.93 -0.33 0.57 16 46 H 0.07 0.94 7.72 -51.93 -0.40 0.54 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -32.54 342.00 -7.97 -40.51 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.01 Total: 1.92 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 0.14 Total: 4.54 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -1.17 Total: -61.95 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.15 Total: 21.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.54 -7.97 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197907380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.536 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds