Wall clock time and date at job start Wed Apr 15 2020 11:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46537 * 2 1 4 4 N 1.46902 * 109.46808 * 180.02562 * 3 2 1 5 5 C 1.46901 * 111.00082 * 293.95037 * 4 3 2 6 6 C 1.46905 * 110.99691 * 169.99510 * 4 3 2 7 7 C 1.50701 * 109.46755 * 189.99739 * 6 4 3 8 8 O 1.21280 * 120.00362 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99617 * 179.97438 * 7 6 4 10 10 C 1.48216 * 119.96824 * 180.02562 * 9 7 6 11 11 C 1.47135 * 110.33904 * 102.47308 * 10 9 7 12 12 C 1.53789 * 111.84539 * 58.29836 * 11 10 9 13 13 N 1.43465 * 107.95825 * 281.66677 * 12 11 10 14 14 C 1.36944 * 118.93846 * 273.60773 * 13 12 11 15 15 H 1.08000 * 119.99821 * 24.61982 * 14 13 12 16 16 C 1.38810 * 120.00048 * 204.62585 * 14 13 12 17 17 N 1.31621 * 119.99786 * 203.00943 * 16 14 13 18 18 Si 1.86800 * 120.00203 * 22.99989 * 16 14 13 19 19 H 1.48500 * 109.47578 * 265.75135 * 18 16 14 20 20 H 1.48499 * 109.47109 * 145.74548 * 18 16 14 21 21 H 1.48507 * 109.46961 * 25.74996 * 18 16 14 22 22 C 1.48859 * 122.12251 * 93.88897 * 13 12 11 23 23 C 1.43619 * 119.96856 * 359.97438 * 9 7 6 24 24 H 1.08993 * 109.47417 * 60.00872 * 1 2 3 25 25 H 1.09002 * 109.46760 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47618 * 299.99857 * 1 2 3 27 27 H 1.08992 * 109.47145 * 240.00147 * 2 1 3 28 28 H 1.09002 * 109.47313 * 119.99293 * 2 1 3 29 29 H 1.08991 * 109.47338 * 59.99445 * 3 2 1 30 30 H 1.09002 * 109.46742 * 299.99643 * 3 2 1 31 31 H 1.08994 * 109.46845 * 296.04900 * 5 4 3 32 32 H 1.08994 * 109.46757 * 56.04795 * 5 4 3 33 33 H 1.09001 * 109.46711 * 176.04577 * 5 4 3 34 34 H 1.09002 * 109.46635 * 70.00100 * 6 4 3 35 35 H 1.08994 * 109.47230 * 310.00323 * 6 4 3 36 36 H 1.09000 * 109.32286 * 342.20746 * 10 9 7 37 37 H 1.08998 * 109.18266 * 222.65057 * 10 9 7 38 38 H 1.09001 * 109.00609 * 297.68712 * 11 10 9 39 39 H 1.09000 * 108.94345 * 178.86685 * 11 10 9 40 40 H 1.08997 * 109.76815 * 162.04808 * 12 11 10 41 41 H 1.09006 * 109.80641 * 41.30189 * 12 11 10 42 42 H 0.96998 * 119.99910 * 5.15283 * 17 16 14 43 43 H 1.08995 * 109.48053 * 80.34635 * 22 13 12 44 44 H 1.09000 * 109.48016 * 200.38205 * 22 13 12 45 45 H 1.08996 * 108.87916 * 31.46861 * 23 9 7 46 46 H 1.09004 * 108.87092 * 150.00564 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 -0.0006 5 6 4.0359 0.8858 1.2524 6 6 4.0351 2.7934 -0.2389 7 6 5.5213 2.7186 -0.4768 8 8 6.0865 1.6459 -0.4509 9 7 6.2224 3.8440 -0.7194 10 6 7.6840 3.7697 -0.9539 11 6 7.9783 3.8918 -2.3903 12 6 7.4399 5.2084 -2.9749 13 7 6.0288 5.0555 -3.1833 14 6 5.5880 4.5082 -4.3587 15 1 6.2335 3.8530 -4.9248 16 6 4.3117 4.7957 -4.8226 17 7 3.7135 3.9717 -5.6566 18 14 3.4430 6.3519 -4.2630 19 1 2.5816 6.0446 -3.0930 20 1 2.6046 6.8764 -5.3708 21 1 4.4522 7.3719 -3.8803 22 6 5.0280 5.4782 -2.1656 23 6 5.5522 5.1138 -0.7515 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.6765 1.9564 0.8899 30 1 1.6765 1.9563 -0.8901 31 1 3.7451 1.5261 2.0852 32 1 3.6304 -0.1144 1.4043 33 1 5.1232 0.8326 1.1973 34 1 3.8375 3.4190 0.6315 35 1 3.5482 3.2239 -1.1139 36 1 8.0597 2.8139 -0.5886 37 1 8.1748 4.5800 -0.4149 38 1 7.5209 3.0554 -2.9188 39 1 9.0581 3.8546 -2.5346 40 1 7.9321 5.4187 -3.9244 41 1 7.6230 6.0249 -2.2762 42 1 4.1322 3.1281 -5.8887 43 1 4.8732 6.5549 -2.2334 44 1 4.0848 4.9630 -2.3475 45 1 4.7101 5.0857 -0.0601 46 1 6.2479 5.8879 -0.4279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197907380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:59 Heat of formation + Delta-G solvation = -20.379920 kcal Electronic energy + Delta-G solvation = -24423.178112 eV Core-core repulsion = 21155.034346 eV Total energy + Delta-G solvation = -3268.143766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37578 -39.17658 -38.06264 -36.02141 -34.60659 -33.97087 -33.33915 -29.78975 -28.96264 -27.96189 -27.28045 -24.92433 -24.67090 -23.09445 -21.73334 -21.54700 -20.01226 -19.29533 -18.20271 -17.49022 -17.07713 -16.71913 -16.42156 -16.26291 -15.71253 -15.59112 -15.19848 -15.12928 -14.72736 -14.45612 -14.27109 -13.94879 -13.74903 -13.67874 -13.34943 -13.02130 -12.84202 -12.81941 -12.70282 -12.53571 -12.38202 -11.99424 -11.97707 -11.92033 -11.59528 -11.49472 -11.46957 -11.28211 -10.73543 -10.58920 -9.58333 -9.26277 -8.92784 -8.56227 -5.46175 1.42041 1.57421 1.62459 1.75150 2.06514 2.59719 2.94889 3.08060 3.43472 3.59843 3.92466 4.00763 4.05719 4.08868 4.14646 4.21337 4.30209 4.36494 4.44913 4.47831 4.49032 4.54273 4.61839 4.64689 4.68532 4.79647 4.80000 4.85765 4.88463 4.93063 5.00525 5.07722 5.18485 5.18882 5.28441 5.39226 5.42047 5.72099 5.80638 5.93106 6.12406 6.26789 6.52013 6.95074 7.26084 7.72267 8.04844 8.86232 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.006818 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.555508 B = 4105.815331 C = 5388.568417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.056 3.944 4 N -0.554 5.554 5 C 0.027 3.973 6 C 0.044 3.956 7 C 0.513 3.487 8 O -0.572 6.572 9 N -0.592 5.592 10 C 0.130 3.870 11 C -0.155 4.155 12 C 0.159 3.841 13 N -0.611 5.611 14 C -0.329 4.329 15 H 0.014 0.986 16 C -0.073 4.073 17 N -0.957 5.957 18 Si 1.102 2.898 19 H -0.265 1.265 20 H -0.316 1.316 21 H -0.255 1.255 22 C 0.091 3.909 23 C 0.095 3.905 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.010 0.990 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.079 0.921 42 H 0.242 0.758 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 2.601 18.902 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.071 4.071 4 N -0.279 5.279 5 C -0.121 4.121 6 C -0.087 4.087 7 C 0.302 3.698 8 O -0.452 6.452 9 N -0.323 5.323 10 C 0.009 3.991 11 C -0.196 4.196 12 C 0.032 3.968 13 N -0.335 5.335 14 C -0.459 4.459 15 H 0.032 0.968 16 C -0.266 4.266 17 N -0.600 5.600 18 Si 0.927 3.073 19 H -0.191 1.191 20 H -0.245 1.245 21 H -0.180 1.180 22 C -0.034 4.034 23 C -0.030 4.030 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.029 0.971 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.121 0.879 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.458 2.659 18.368 18.616 hybrid contribution 1.242 -1.177 -0.497 1.782 sum -0.216 1.482 17.870 17.933 Atomic orbital electron populations 1.21701 0.94003 1.02452 1.02173 1.21507 0.96611 0.95394 1.02057 1.22235 0.85311 0.98417 1.01114 1.61524 1.08591 1.20629 1.37184 1.22481 1.01196 1.00147 0.88272 1.21976 0.91804 0.91809 1.03071 1.20882 0.89861 0.83517 0.75544 1.90574 1.72086 1.29401 1.53134 1.47545 1.08878 1.06949 1.68921 1.20642 0.79484 1.03237 0.95746 1.21671 1.00809 1.00084 0.97051 1.20492 0.83202 0.94690 0.98421 1.44001 1.01857 1.72817 1.14821 1.19996 1.00657 1.23838 1.01368 0.96806 1.27503 0.96030 1.05961 0.97102 1.70971 1.39262 1.10058 1.39662 0.83443 0.75155 0.73630 0.75069 1.19078 1.24531 1.17993 1.22868 0.92589 0.98482 0.89507 1.21969 0.99403 0.85487 0.96141 0.93164 0.91629 0.91507 0.93342 0.91070 0.92777 0.92014 0.94406 0.90470 0.91969 0.88944 0.89341 0.91470 0.87413 0.97129 0.89823 0.94789 0.90265 0.94962 0.92114 0.93654 0.87935 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.12 -2.75 5.86 30.60 0.18 -2.57 16 3 C 0.06 1.46 4.96 86.30 0.43 1.89 16 4 N -0.55 -17.48 4.50 -927.05 -4.17 -21.65 16 5 C 0.03 0.71 9.01 127.69 1.15 1.87 16 6 C 0.04 1.38 4.00 85.56 0.34 1.72 16 7 C 0.51 18.90 7.40 87.66 0.65 19.55 16 8 O -0.57 -25.12 13.75 -3.03 -0.04 -25.16 16 9 N -0.59 -18.99 2.46 -830.64 -2.05 -21.04 16 10 C 0.13 3.88 5.70 84.22 0.48 4.36 16 11 C -0.16 -5.48 5.64 29.04 0.16 -5.31 16 12 C 0.16 5.86 5.63 87.21 0.49 6.35 16 13 N -0.61 -27.53 2.33 -697.53 -1.62 -29.16 16 14 C -0.33 -18.93 9.55 84.03 0.80 -18.13 16 15 H 0.01 0.92 8.06 -2.91 -0.02 0.90 16 16 C -0.07 -4.27 5.14 84.86 0.44 -3.83 16 17 N -0.96 -62.40 13.70 21.65 0.30 -62.10 16 18 Si 1.10 50.68 24.43 68.60 1.68 52.35 16 19 H -0.26 -10.73 6.75 99.48 0.67 -10.06 16 20 H -0.32 -15.28 7.11 99.48 0.71 -14.58 16 21 H -0.26 -10.35 6.41 99.48 0.64 -9.71 16 22 C 0.09 3.33 4.54 86.66 0.39 3.72 16 23 C 0.10 2.52 5.05 87.65 0.44 2.96 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.50 6.47 -2.39 -0.02 1.48 16 29 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 30 H 0.06 1.78 7.93 -2.39 -0.02 1.76 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.87 6.30 -2.39 -0.02 1.85 16 33 H 0.06 2.00 5.88 -2.39 -0.01 1.99 16 34 H 0.09 2.16 7.35 -2.39 -0.02 2.14 16 35 H 0.09 3.13 7.13 -2.39 -0.02 3.11 16 36 H 0.07 2.19 7.12 -2.39 -0.02 2.17 16 37 H 0.11 2.28 8.05 -2.39 -0.02 2.26 16 38 H 0.01 0.47 7.91 -2.39 -0.02 0.45 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.03 1.35 8.02 -2.39 -0.02 1.33 16 41 H 0.08 2.27 7.59 -2.38 -0.02 2.25 16 42 H 0.24 16.32 8.73 -92.71 -0.81 15.51 16 43 H 0.06 2.03 5.81 -2.39 -0.01 2.02 16 44 H 0.05 1.91 4.74 -2.39 -0.01 1.89 16 45 H 0.10 2.09 6.38 -2.39 -0.02 2.08 16 46 H 0.11 2.13 7.72 -2.38 -0.02 2.11 16 Total: -1.00 -78.00 342.00 1.56 -76.44 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.80 Total: 19.72 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.67 Total: 10.59 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -7.54 Total: -133.94 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.04 Total: -25.16 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 1.68 Total: 52.35 kcal Total: -78.00 1.56 -76.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197907380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.063 kcal (2) G-P(sol) polarization free energy of solvation -78.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds