Wall clock time and date at job start Wed Apr 15 2020 11:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.45738 * 2 1 4 4 C 1.53032 * 109.45787 * 240.03096 * 2 1 3 5 5 C 1.53189 * 109.31100 * 178.62790 * 4 2 1 6 6 N 1.46929 * 108.77770 * 54.63406 * 5 4 2 7 7 C 1.34772 * 120.63308 * 126.36803 * 6 5 4 8 8 O 1.21283 * 119.99912 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99971 * 0.02562 * 7 6 5 10 10 H 1.09001 * 109.46817 * 319.98961 * 9 7 6 11 11 N 1.46910 * 109.46728 * 199.99907 * 9 7 6 12 12 C 1.52992 * 109.47798 * 79.99728 * 9 7 6 13 13 C 1.52997 * 109.47482 * 185.00026 * 12 9 7 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.46932 * 118.73406 * 306.64186 * 6 5 4 23 23 C 1.52761 * 109.00449 * 53.31096 * 22 6 5 24 24 H 1.09002 * 109.38680 * 65.51312 * 23 22 6 25 25 C 1.53003 * 109.56042 * 185.55139 * 23 22 6 26 26 N 1.46901 * 109.46916 * 294.96395 * 25 23 22 27 27 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47050 * 299.97312 * 1 2 3 29 29 H 1.08998 * 109.47428 * 59.97072 * 1 2 3 30 30 H 1.09000 * 109.50549 * 58.67413 * 4 2 1 31 31 H 1.09005 * 109.52713 * 298.59084 * 4 2 1 32 32 H 1.08998 * 109.58643 * 294.84389 * 5 4 2 33 33 H 1.09004 * 109.70792 * 174.49112 * 5 4 2 34 34 H 1.00894 * 110.99558 * 176.04306 * 11 9 7 35 35 H 1.00892 * 110.99957 * 299.99600 * 11 9 7 36 36 H 1.09002 * 109.47103 * 64.99779 * 12 9 7 37 37 H 1.08998 * 109.46862 * 305.00591 * 12 9 7 38 38 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 40 40 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.58497 * 173.14277 * 22 6 5 42 42 H 1.08996 * 109.58645 * 293.56801 * 22 6 5 43 43 H 1.08998 * 109.47293 * 54.96312 * 25 23 22 44 44 H 1.08996 * 109.47267 * 174.96959 * 25 23 22 45 45 H 1.00899 * 111.00208 * 56.05402 * 26 25 23 46 46 H 1.00907 * 110.99898 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6889 -1.2640 6 7 4.0676 -1.2493 0.0003 7 6 4.9609 -2.2584 0.0004 8 8 5.3633 -2.7120 1.0508 9 6 5.4607 -2.8224 -1.3046 10 1 4.6348 -2.8859 -2.0130 11 7 6.0154 -4.1637 -1.0779 12 6 6.5497 -1.9093 -1.8713 13 6 6.9691 -2.4129 -3.2538 14 6 8.0414 -1.5131 -3.8122 15 1 8.3892 -0.6670 -3.2382 16 6 8.5790 -1.7707 -5.0554 17 7 9.5151 -0.9857 -5.5424 18 14 7.9779 -3.2345 -6.0479 19 1 6.8367 -2.8184 -6.9022 20 1 9.0807 -3.7374 -6.9058 21 1 7.5383 -4.3115 -5.1248 22 6 3.5668 -0.6926 1.2645 23 6 2.0396 -0.7208 1.2501 24 1 1.6969 -1.7555 1.2386 25 6 1.5025 -0.0187 2.4990 26 7 1.8922 -0.7791 3.6939 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5134 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 1.6574 -0.2208 -2.1398 31 1 1.6976 -1.7557 -1.2389 32 1 3.9144 0.3405 -1.3671 33 1 3.9437 -1.2834 -2.0983 34 1 6.2985 -4.5896 -1.9476 35 1 6.7832 -4.1317 -0.4241 36 1 7.4124 -1.9160 -1.2050 37 1 6.1641 -0.8934 -1.9561 38 1 6.1064 -2.4062 -3.9200 39 1 7.3548 -3.4288 -3.1688 40 1 9.8931 -1.1667 -6.4172 41 1 3.9341 -1.2910 2.0982 42 1 3.9096 0.3365 1.3718 43 1 1.9177 0.9874 2.5571 44 1 0.4154 0.0394 2.4439 45 1 2.8928 -0.9024 3.7337 46 1 1.5487 -0.3357 4.5327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424192128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:39 Heat of formation + Delta-G solvation = -56.448439 kcal Electronic energy + Delta-G solvation = -23495.551417 eV Core-core repulsion = 20225.843603 eV Total energy + Delta-G solvation = -3269.707814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45411 -38.38185 -35.68068 -35.18066 -33.69328 -32.81591 -30.71220 -30.32359 -28.65065 -26.95186 -25.37325 -24.04219 -22.79429 -21.89932 -20.53000 -19.96121 -18.91214 -17.53160 -16.75794 -16.39384 -15.75252 -15.34426 -15.06879 -14.77866 -14.49976 -14.25404 -14.13038 -13.94204 -13.69665 -13.40917 -13.36899 -13.01700 -12.69499 -12.66604 -12.22260 -12.04167 -11.84777 -11.71517 -11.38972 -11.31299 -11.02835 -10.98119 -10.57508 -10.51094 -10.32140 -10.07792 -9.89540 -9.33305 -9.31601 -8.97448 -8.63311 -8.59178 -8.29844 -6.12810 -4.12379 2.87102 3.02284 3.23887 3.32661 3.33933 4.17291 4.36622 4.46258 4.48186 4.57642 4.77513 4.81518 5.02936 5.07162 5.14232 5.19832 5.20420 5.25311 5.33431 5.40834 5.43712 5.49123 5.58456 5.64294 5.69314 5.71068 5.77661 5.92360 5.93683 5.98795 6.13555 6.23930 6.31997 6.54858 6.64256 6.84555 7.08339 7.13043 7.20208 7.31805 7.55505 7.65931 7.79181 8.39486 8.43725 8.91187 9.48447 11.00420 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.003855 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.089534 B = 7261.986732 C = 7744.650823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.130 4.130 5 C 0.101 3.899 6 N -0.612 5.612 7 C 0.529 3.471 8 O -0.537 6.537 9 C 0.071 3.929 10 H 0.097 0.903 11 N -0.831 5.831 12 C -0.130 4.130 13 C -0.010 4.010 14 C -0.523 4.523 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.116 3.884 23 C -0.096 4.096 24 H 0.084 0.916 25 C 0.067 3.933 26 N -0.853 5.853 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.350 0.650 35 H 0.348 0.652 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.264 0.736 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.027 0.973 44 H 0.078 0.922 45 H 0.343 0.657 46 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.431 2.805 11.951 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.022 4.022 6 N -0.347 5.347 7 C 0.317 3.683 8 O -0.413 6.413 9 C -0.044 4.044 10 H 0.115 0.885 11 N -0.362 5.362 12 C -0.170 4.170 13 C -0.047 4.047 14 C -0.561 4.561 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.007 4.007 23 C -0.116 4.116 24 H 0.102 0.898 25 C -0.065 4.065 26 N -0.383 5.383 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.096 0.904 45 H 0.156 0.844 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.230 1.795 12.330 22.914 hybrid contribution 1.174 0.746 -0.901 1.657 sum -18.056 2.541 11.429 21.520 Atomic orbital electron populations 1.21890 0.94966 1.02043 1.01633 1.21114 0.95785 0.99456 0.94210 0.91011 1.21993 0.95242 1.01578 0.98008 1.21879 0.93955 0.99992 0.86326 1.48002 1.43820 1.36040 1.06796 1.20776 0.77726 0.78158 0.91599 1.90625 1.57529 1.59478 1.33688 1.21548 0.98947 0.90715 0.93179 0.88527 1.58744 1.41240 1.18776 1.17489 1.22221 0.96717 0.98725 0.99356 1.19572 0.96746 0.96912 0.91516 1.21060 1.19742 1.12742 1.02586 0.91092 1.25043 0.94583 0.96301 0.97513 1.69913 1.27293 1.38278 1.18440 0.86765 0.78566 0.83528 0.80319 1.20243 1.21332 1.18959 1.21477 0.93061 0.98604 0.87600 1.21512 0.95063 1.01177 0.93842 0.89797 1.21870 1.00735 0.94119 0.89728 1.58732 1.19343 1.55500 1.04739 0.92531 0.92483 0.92570 0.90367 0.91271 0.91039 0.88717 0.83525 0.83874 0.92055 0.91858 0.96840 0.96574 0.92627 0.88961 0.92246 0.95505 0.90359 0.84379 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.82 37.16 0.33 -0.72 16 2 C -0.09 -0.72 2.23 -90.58 -0.20 -0.92 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -1.19 5.36 -26.62 -0.14 -1.33 16 5 C 0.10 1.15 5.59 -3.71 -0.02 1.13 16 6 N -0.61 -8.22 2.98 -173.03 -0.52 -8.74 16 7 C 0.53 8.83 6.95 -10.99 -0.08 8.76 16 8 O -0.54 -10.51 15.66 5.55 0.09 -10.43 16 9 C 0.07 1.17 2.35 -68.86 -0.16 1.01 16 10 H 0.10 1.47 6.54 -51.93 -0.34 1.13 16 11 N -0.83 -13.80 8.94 -5.65 -0.05 -13.85 16 12 C -0.13 -2.47 4.54 -26.74 -0.12 -2.59 16 13 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 14 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 15 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 18 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 22 C 0.12 1.34 5.32 -3.93 -0.02 1.32 16 23 C -0.10 -0.92 2.08 -90.72 -0.19 -1.11 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 C 0.07 0.53 6.00 -3.82 -0.02 0.51 16 26 N -0.85 -7.19 9.62 -10.37 -0.10 -7.28 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.36 6.29 -51.93 -0.33 0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.13 5.18 -51.93 -0.27 0.86 16 34 H 0.35 5.60 7.55 -39.29 -0.30 5.31 16 35 H 0.35 5.90 8.58 -39.30 -0.34 5.56 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.17 7.20 -51.93 -0.37 0.79 16 38 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 39 H 0.02 0.36 5.93 -51.93 -0.31 0.05 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 1.22 5.81 -51.93 -0.30 0.92 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.59 6.14 -51.93 -0.32 0.27 16 45 H 0.34 2.98 7.38 -39.29 -0.29 2.69 16 46 H 0.34 2.19 9.08 -39.29 -0.36 1.83 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -31.98 348.53 -8.11 -40.10 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -7.72 Total: 12.34 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.17 Total: -7.22 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.11 Total: -56.35 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.98 -8.11 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.352 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds