Wall clock time and date at job start Wed Apr 15 2020 11:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.45738 * 2 1 4 4 C 1.53032 * 109.45787 * 240.03096 * 2 1 3 5 5 C 1.53189 * 109.31100 * 178.62790 * 4 2 1 6 6 N 1.46929 * 108.77770 * 54.63406 * 5 4 2 7 7 C 1.34772 * 120.63308 * 126.36803 * 6 5 4 8 8 O 1.21283 * 119.99912 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99971 * 0.02562 * 7 6 5 10 10 H 1.09001 * 109.46817 * 319.98961 * 9 7 6 11 11 N 1.46910 * 109.46728 * 199.99907 * 9 7 6 12 12 C 1.52992 * 109.47798 * 79.99728 * 9 7 6 13 13 C 1.52997 * 109.47482 * 185.00026 * 12 9 7 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.46932 * 118.73406 * 306.64186 * 6 5 4 23 23 C 1.52761 * 109.00449 * 53.31096 * 22 6 5 24 24 H 1.09002 * 109.38680 * 65.51312 * 23 22 6 25 25 C 1.53003 * 109.56042 * 185.55139 * 23 22 6 26 26 N 1.46901 * 109.46916 * 294.96395 * 25 23 22 27 27 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47050 * 299.97312 * 1 2 3 29 29 H 1.08998 * 109.47428 * 59.97072 * 1 2 3 30 30 H 1.09000 * 109.50549 * 58.67413 * 4 2 1 31 31 H 1.09005 * 109.52713 * 298.59084 * 4 2 1 32 32 H 1.08998 * 109.58643 * 294.84389 * 5 4 2 33 33 H 1.09004 * 109.70792 * 174.49112 * 5 4 2 34 34 H 1.00894 * 110.99558 * 176.04306 * 11 9 7 35 35 H 1.00892 * 110.99957 * 299.99600 * 11 9 7 36 36 H 1.09002 * 109.47103 * 64.99779 * 12 9 7 37 37 H 1.08998 * 109.46862 * 305.00591 * 12 9 7 38 38 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 40 40 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.58497 * 173.14277 * 22 6 5 42 42 H 1.08996 * 109.58645 * 293.56801 * 22 6 5 43 43 H 1.08998 * 109.47293 * 54.96312 * 25 23 22 44 44 H 1.08996 * 109.47267 * 174.96959 * 25 23 22 45 45 H 1.00899 * 111.00208 * 56.05402 * 26 25 23 46 46 H 1.00907 * 110.99898 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6889 -1.2640 6 7 4.0676 -1.2493 0.0003 7 6 4.9609 -2.2584 0.0004 8 8 5.3633 -2.7120 1.0508 9 6 5.4607 -2.8224 -1.3046 10 1 4.6348 -2.8859 -2.0130 11 7 6.0154 -4.1637 -1.0779 12 6 6.5497 -1.9093 -1.8713 13 6 6.9691 -2.4129 -3.2538 14 6 8.0414 -1.5131 -3.8122 15 1 8.3892 -0.6670 -3.2382 16 6 8.5790 -1.7707 -5.0554 17 7 9.5151 -0.9857 -5.5424 18 14 7.9779 -3.2345 -6.0479 19 1 6.8367 -2.8184 -6.9022 20 1 9.0807 -3.7374 -6.9058 21 1 7.5383 -4.3115 -5.1248 22 6 3.5668 -0.6926 1.2645 23 6 2.0396 -0.7208 1.2501 24 1 1.6969 -1.7555 1.2386 25 6 1.5025 -0.0187 2.4990 26 7 1.8922 -0.7791 3.6939 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5134 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 1.6574 -0.2208 -2.1398 31 1 1.6976 -1.7557 -1.2389 32 1 3.9144 0.3405 -1.3671 33 1 3.9437 -1.2834 -2.0983 34 1 6.2985 -4.5896 -1.9476 35 1 6.7832 -4.1317 -0.4241 36 1 7.4124 -1.9160 -1.2050 37 1 6.1641 -0.8934 -1.9561 38 1 6.1064 -2.4062 -3.9200 39 1 7.3548 -3.4288 -3.1688 40 1 9.8931 -1.1667 -6.4172 41 1 3.9341 -1.2910 2.0982 42 1 3.9096 0.3365 1.3718 43 1 1.9177 0.9874 2.5571 44 1 0.4154 0.0394 2.4439 45 1 2.8928 -0.9024 3.7337 46 1 1.5487 -0.3357 4.5327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424192128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:39 Heat of formation + Delta-G solvation = -81.309421 kcal Electronic energy + Delta-G solvation = -23496.629470 eV Core-core repulsion = 20225.843603 eV Total energy + Delta-G solvation = -3270.785867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55546 -39.40075 -37.18999 -36.07241 -34.81725 -34.50815 -32.09926 -31.54301 -29.59090 -28.29492 -26.49181 -25.25525 -23.98013 -22.65560 -22.10344 -20.91467 -20.05945 -19.05880 -18.50271 -17.38735 -16.63825 -16.41117 -16.24377 -15.98330 -15.90562 -15.50453 -15.27971 -14.95359 -14.79425 -14.63546 -14.46103 -14.19742 -14.05978 -13.92772 -13.50647 -13.09477 -12.85352 -12.74368 -12.63394 -12.48522 -12.19404 -12.06953 -11.85849 -11.78089 -11.68998 -11.41612 -11.32828 -11.26218 -10.77219 -10.66037 -9.73156 -9.62267 -9.59953 -8.29840 -6.35451 1.38223 1.40847 1.51729 1.56895 1.93006 2.36414 3.05747 3.42471 3.53279 3.66455 3.74411 3.82234 3.96621 3.99374 4.03751 4.12649 4.24819 4.34665 4.46876 4.53801 4.56516 4.61998 4.65486 4.76372 4.80191 4.83220 4.92267 4.93451 5.01708 5.06984 5.13556 5.21514 5.34455 5.40488 5.44467 5.52987 5.55997 5.62043 6.02647 6.21628 6.24798 6.35720 6.46729 6.55174 6.72749 7.14072 7.29413 8.86939 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.003855 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.089534 B = 7261.986732 C = 7744.650823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.124 4.124 5 C 0.094 3.906 6 N -0.606 5.606 7 C 0.522 3.478 8 O -0.574 6.574 9 C 0.081 3.919 10 H 0.117 0.883 11 N -0.831 5.831 12 C -0.117 4.117 13 C -0.004 4.004 14 C -0.534 4.534 15 H 0.026 0.974 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.953 3.047 19 H -0.263 1.263 20 H -0.290 1.290 21 H -0.239 1.239 22 C 0.113 3.887 23 C -0.086 4.086 24 H 0.062 0.938 25 C 0.070 3.930 26 N -0.865 5.865 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.355 0.645 35 H 0.345 0.655 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.024 0.976 40 H 0.266 0.734 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.088 0.912 45 H 0.339 0.661 46 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.095 2.338 11.469 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.163 4.163 5 C -0.028 4.028 6 N -0.339 5.339 7 C 0.310 3.690 8 O -0.453 6.453 9 C -0.034 4.034 10 H 0.135 0.865 11 N -0.362 5.362 12 C -0.157 4.157 13 C -0.042 4.042 14 C -0.572 4.572 15 H 0.044 0.956 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.776 3.224 19 H -0.188 1.188 20 H -0.216 1.216 21 H -0.163 1.163 22 C -0.010 4.010 23 C -0.106 4.106 24 H 0.080 0.920 25 C -0.061 4.061 26 N -0.396 5.396 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.106 0.894 45 H 0.152 0.848 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.943 1.353 11.860 24.980 hybrid contribution 2.040 1.005 -0.691 2.377 sum -19.903 2.359 11.170 22.944 Atomic orbital electron populations 1.21851 0.93676 1.01958 1.02619 1.21111 0.96779 0.99439 0.92924 0.90158 1.21975 0.93295 1.01641 0.99342 1.22095 0.95669 1.00078 0.84992 1.48092 1.42595 1.34799 1.08385 1.20823 0.78262 0.78825 0.91055 1.90607 1.59101 1.60956 1.34647 1.21457 0.98466 0.89930 0.93561 0.86540 1.58757 1.41162 1.18695 1.17631 1.22021 0.96893 0.99451 0.97359 1.19490 0.95553 0.96024 0.93125 1.21409 1.21007 1.12315 1.02444 0.95570 1.26067 0.94633 0.99721 0.98923 1.70080 1.29222 1.40802 1.19192 0.85620 0.78191 0.79818 0.78800 1.18761 1.21603 1.16252 1.21606 0.94645 0.98553 0.86169 1.21409 0.93214 1.00385 0.95573 0.91993 1.21861 1.01249 0.94217 0.88753 1.58744 1.19200 1.56086 1.05561 0.93141 0.91575 0.91563 0.88380 0.91941 0.90230 0.89200 0.83017 0.84232 0.94164 0.91693 0.95037 0.95745 0.92512 0.90848 0.91092 0.94454 0.89350 0.84766 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.82 71.98 0.63 -0.99 16 2 C -0.08 -1.17 2.23 -10.77 -0.02 -1.20 16 3 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.12 -1.96 5.36 30.67 0.16 -1.79 16 5 C 0.09 1.94 5.59 86.36 0.48 2.42 16 6 N -0.61 -15.74 2.98 -819.72 -2.44 -18.18 16 7 C 0.52 17.23 6.95 87.66 0.61 17.84 16 8 O -0.57 -22.72 15.66 -3.04 -0.05 -22.76 16 9 C 0.08 2.56 2.35 44.16 0.10 2.67 16 10 H 0.12 3.25 6.54 -2.39 -0.02 3.23 16 11 N -0.83 -26.59 8.94 -171.79 -1.54 -28.13 16 12 C -0.12 -4.39 4.54 30.59 0.14 -4.25 16 13 C 0.00 -0.19 3.81 29.85 0.11 -0.08 16 14 C -0.53 -29.81 9.66 25.60 0.25 -29.56 16 15 H 0.03 1.64 7.99 -2.91 -0.02 1.61 16 16 C 0.00 0.19 5.47 84.66 0.46 0.65 16 17 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 18 Si 0.95 42.25 27.47 68.60 1.88 44.14 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 22 C 0.11 2.54 5.32 86.22 0.46 3.00 16 23 C -0.09 -1.52 2.08 -10.86 -0.02 -1.54 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 C 0.07 0.99 6.00 86.30 0.52 1.51 16 26 N -0.86 -13.67 9.62 -186.72 -1.80 -15.46 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.64 6.29 -2.38 -0.02 0.62 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.96 5.18 -2.39 -0.01 1.94 16 34 H 0.35 10.61 7.55 -89.70 -0.68 9.93 16 35 H 0.34 11.56 8.58 -89.70 -0.77 10.79 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 2.38 7.20 -2.39 -0.02 2.36 16 38 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 39 H 0.02 1.02 5.93 -2.39 -0.01 1.01 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.07 1.96 5.81 -2.39 -0.01 1.95 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.04 0.46 8.14 -2.39 -0.02 0.45 16 44 H 0.09 1.10 6.14 -2.39 -0.01 1.08 16 45 H 0.34 5.78 7.38 -89.69 -0.66 5.12 16 46 H 0.35 4.07 9.08 -89.69 -0.81 3.26 16 Total: -1.00 -70.44 348.53 -1.72 -72.16 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -1.97 Total: 38.21 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 3.89 Total: -11.32 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -5.47 Total: -120.42 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.14 kcal Total: -70.44 -1.72 -72.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.153 kcal (2) G-P(sol) polarization free energy of solvation -70.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds