Wall clock time and date at job start Wed Apr 15 2020 11:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.45966 * 2 1 4 4 C 1.53043 * 109.44634 * 240.03782 * 2 1 3 5 5 C 1.53192 * 109.30860 * 178.61931 * 4 2 1 6 6 N 1.46926 * 108.77820 * 54.63429 * 5 4 2 7 7 C 1.34779 * 120.63009 * 126.41120 * 6 5 4 8 8 O 1.21277 * 120.00078 * 179.97438 * 7 6 5 9 9 C 1.50704 * 119.99796 * 0.02562 * 7 6 5 10 10 H 1.08994 * 109.47087 * 40.00379 * 9 7 6 11 11 N 1.46906 * 109.46630 * 159.99814 * 9 7 6 12 12 C 1.52991 * 109.47266 * 279.99978 * 9 7 6 13 13 C 1.52998 * 109.47440 * 175.00419 * 12 9 7 14 14 C 1.50696 * 109.47711 * 179.97438 * 13 12 9 15 15 H 1.08008 * 119.99557 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00222 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47446 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46748 * 120.00510 * 18 16 14 21 21 H 1.48501 * 109.47081 * 239.99947 * 18 16 14 22 22 C 1.46925 * 118.73914 * 306.39111 * 6 5 4 23 23 C 1.53037 * 109.46300 * 119.97485 * 2 1 3 24 24 H 1.09001 * 109.52544 * 61.40618 * 23 2 1 25 25 C 1.52998 * 109.50033 * 301.32547 * 23 2 1 26 26 N 1.46898 * 109.47375 * 175.16133 * 25 23 2 27 27 H 1.08998 * 109.46704 * 300.01854 * 1 2 3 28 28 H 1.08993 * 109.47252 * 60.02426 * 1 2 3 29 29 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.50069 * 58.67050 * 4 2 1 31 31 H 1.09000 * 109.49902 * 298.56731 * 4 2 1 32 32 H 1.09006 * 109.58809 * 294.84764 * 5 4 2 33 33 H 1.09002 * 109.58657 * 174.42750 * 5 4 2 34 34 H 1.00898 * 111.00304 * 296.04192 * 11 9 7 35 35 H 1.00903 * 110.99629 * 60.00176 * 11 9 7 36 36 H 1.09003 * 109.47162 * 295.00110 * 12 9 7 37 37 H 1.08999 * 109.47428 * 55.00031 * 12 9 7 38 38 H 1.09003 * 109.46691 * 299.99979 * 13 12 9 39 39 H 1.08999 * 109.47127 * 59.99428 * 13 12 9 40 40 H 0.97001 * 119.99960 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.58340 * 173.39503 * 22 6 5 42 42 H 1.09003 * 109.58494 * 293.68068 * 22 6 5 43 43 H 1.09006 * 109.46964 * 295.16380 * 25 23 2 44 44 H 1.09002 * 109.46887 * 55.16018 * 25 23 2 45 45 H 1.00902 * 110.99741 * 180.02562 * 26 25 23 46 46 H 1.00896 * 111.00122 * 303.95110 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7207 -1.2503 5 6 3.5711 -0.6888 -1.2646 6 7 4.0677 -1.2492 -0.0005 7 6 4.9618 -2.2578 -0.0007 8 8 5.3644 -2.7114 1.0495 9 6 5.4620 -2.8209 -1.3060 10 1 5.6248 -2.0082 -2.0137 11 7 6.7265 -3.5334 -1.0792 12 6 4.4245 -3.7914 -1.8737 13 6 4.8743 -4.2676 -3.2564 14 6 3.8527 -5.2240 -3.8154 15 1 2.9708 -5.4682 -3.2415 16 6 4.0437 -5.7873 -5.0592 17 7 5.1177 -5.4903 -5.7577 18 14 2.7776 -6.9735 -5.7517 19 1 1.6700 -7.1401 -4.7767 20 1 2.2381 -6.4334 -7.0255 21 1 3.4179 -8.2894 -6.0038 22 6 3.5715 -0.6890 1.2639 23 6 2.0400 -0.7209 1.2499 24 1 1.6978 -1.7558 1.2387 25 6 1.5032 -0.0191 2.4990 26 7 1.8965 -0.7775 3.6940 27 1 -0.3633 0.5141 0.8898 28 1 -0.3633 0.5134 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6569 -0.2206 -2.1399 31 1 1.6974 -1.7556 -1.2385 32 1 3.9142 0.3407 -1.3676 33 1 3.9412 -1.2846 -2.0989 34 1 7.4469 -2.9006 -0.7652 35 1 6.6018 -4.2923 -0.4260 36 1 4.3268 -4.6491 -1.2081 37 1 3.4624 -3.2861 -1.9587 38 1 4.9720 -3.4099 -3.9219 39 1 5.8363 -4.7729 -3.1714 40 1 5.2523 -5.8869 -6.6326 41 1 3.9418 -1.2851 2.0979 42 1 3.9167 0.3397 1.3682 43 1 1.9161 0.9881 2.5556 44 1 0.4159 0.0365 2.4455 45 1 1.5532 -0.3341 4.5328 46 1 1.5804 -1.7339 3.6356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424192130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:42 Heat of formation + Delta-G solvation = -60.080162 kcal Electronic energy + Delta-G solvation = -23625.772190 eV Core-core repulsion = 20355.906893 eV Total energy + Delta-G solvation = -3269.865297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39433 -38.33786 -35.35514 -35.04331 -33.58887 -32.78152 -30.70432 -30.05470 -28.52446 -26.57687 -25.15431 -23.90200 -22.67381 -21.91199 -20.40468 -20.16419 -18.67790 -17.16937 -16.37435 -16.09206 -15.94833 -15.40502 -15.15455 -14.86490 -14.65993 -14.35375 -14.14241 -13.60043 -13.47953 -13.33975 -13.11359 -12.76234 -12.34988 -12.26460 -12.01612 -11.95235 -11.84380 -11.48004 -11.14753 -11.00860 -10.90209 -10.62567 -10.60809 -10.48686 -10.41284 -9.95537 -9.76902 -9.33606 -8.97244 -8.93251 -8.51287 -8.31886 -8.15082 -5.93139 -3.95081 2.84780 3.16856 3.33822 3.41593 3.45228 4.19069 4.50208 4.53216 4.56954 4.67441 4.79301 4.92507 5.06127 5.10759 5.24736 5.28979 5.30618 5.40723 5.42574 5.46628 5.49542 5.58562 5.66649 5.73236 5.83798 5.87068 5.88504 5.99957 6.03967 6.11151 6.29494 6.46791 6.62407 6.70804 6.83857 7.10834 7.14810 7.43213 7.61427 7.77247 7.85118 7.97479 8.14593 8.38769 8.49671 9.13095 9.68071 11.17794 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.004337 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.979674 B = 6454.087637 C = 7334.345078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.130 4.130 5 C 0.100 3.900 6 N -0.612 5.612 7 C 0.485 3.515 8 O -0.554 6.554 9 C 0.077 3.923 10 H 0.097 0.903 11 N -0.808 5.808 12 C -0.096 4.096 13 C 0.031 3.969 14 C -0.520 4.520 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.123 3.877 23 C -0.094 4.094 24 H 0.073 0.927 25 C 0.066 3.934 26 N -0.851 5.851 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.333 0.667 35 H 0.347 0.653 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.012 0.988 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.340 0.660 46 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 14.681 13.694 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.168 4.168 5 C -0.023 4.023 6 N -0.346 5.346 7 C 0.272 3.728 8 O -0.432 6.432 9 C -0.039 4.039 10 H 0.115 0.885 11 N -0.335 5.335 12 C -0.134 4.134 13 C -0.006 4.006 14 C -0.559 4.559 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.715 3.285 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.001 3.999 23 C -0.114 4.114 24 H 0.092 0.908 25 C -0.065 4.065 26 N -0.380 5.380 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.152 0.848 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.764 14.368 13.066 20.565 hybrid contribution -1.963 -0.355 0.660 2.101 sum -8.727 14.013 13.727 21.470 Atomic orbital electron populations 1.21907 0.95146 1.02022 1.01595 1.21127 0.95628 0.99406 0.94379 0.91071 1.21980 0.95120 1.01979 0.97752 1.21875 0.94419 0.99301 0.86664 1.48274 1.43554 1.35721 1.07018 1.22698 0.78132 0.78325 0.93631 1.90630 1.58512 1.59939 1.34121 1.21851 0.92475 0.97918 0.91623 0.88549 1.59026 1.05826 1.13912 1.54763 1.21680 0.94724 0.96230 1.00748 1.19016 0.97431 0.95975 0.88140 1.21305 1.06507 1.26254 1.01793 0.93003 1.24982 0.95430 0.96735 0.97139 1.69985 1.26635 1.44103 1.12431 0.86617 0.81748 0.81173 0.78914 1.19893 1.21118 1.21058 1.21486 0.92437 0.98734 0.87289 1.21556 0.95985 1.00160 0.93719 0.90846 1.21874 0.97376 0.97579 0.89672 1.58676 1.68540 1.06577 1.04248 0.92651 0.92460 0.92600 0.90325 0.90861 0.91627 0.88273 0.85515 0.83896 0.92949 0.92755 0.96928 0.94680 0.93174 0.88269 0.92391 0.91074 0.94828 0.84802 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.81 37.16 0.33 -0.87 16 2 C -0.09 -0.78 2.23 -90.58 -0.20 -0.98 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -1.38 5.36 -26.61 -0.14 -1.52 16 5 C 0.10 1.19 5.76 -3.71 -0.02 1.17 16 6 N -0.61 -8.50 2.97 -172.76 -0.51 -9.01 16 7 C 0.48 8.19 6.94 -10.98 -0.08 8.11 16 8 O -0.55 -10.85 15.66 5.56 0.09 -10.76 16 9 C 0.08 1.34 2.29 -68.86 -0.16 1.19 16 10 H 0.10 1.60 6.80 -51.93 -0.35 1.24 16 11 N -0.81 -14.20 8.44 -5.65 -0.05 -14.24 16 12 C -0.10 -1.96 4.45 -26.74 -0.12 -2.07 16 13 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 14 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 18 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.12 1.54 5.53 -3.71 -0.02 1.52 16 23 C -0.09 -0.96 2.02 -90.50 -0.18 -1.14 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 C 0.07 0.55 5.93 -3.83 -0.02 0.52 16 26 N -0.85 -7.18 9.19 -10.37 -0.10 -7.28 16 27 H 0.05 0.39 6.30 -51.93 -0.33 0.06 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.31 4.83 -51.93 -0.25 1.06 16 34 H 0.33 5.14 9.06 -39.29 -0.36 4.78 16 35 H 0.35 6.21 8.58 -39.29 -0.34 5.87 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 1.05 6.96 -51.93 -0.36 0.69 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.10 1.49 6.78 -51.93 -0.35 1.14 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.25 6.15 -51.93 -0.32 -0.07 16 45 H 0.34 2.20 9.08 -39.29 -0.36 1.84 16 46 H 0.34 2.84 8.99 -39.29 -0.35 2.49 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -32.23 356.08 -8.61 -40.85 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.96 Total: 11.32 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.16 Total: -6.80 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.08 Total: -56.62 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.23 -8.61 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.235 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds