Wall clock time and date at job start Wed Apr 15 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.45966 * 2 1 4 4 C 1.53043 * 109.44634 * 240.03782 * 2 1 3 5 5 C 1.53192 * 109.30860 * 178.61931 * 4 2 1 6 6 N 1.46926 * 108.77820 * 54.63429 * 5 4 2 7 7 C 1.34779 * 120.63009 * 126.41120 * 6 5 4 8 8 O 1.21277 * 120.00078 * 179.97438 * 7 6 5 9 9 C 1.50704 * 119.99796 * 0.02562 * 7 6 5 10 10 H 1.08994 * 109.47087 * 40.00379 * 9 7 6 11 11 N 1.46906 * 109.46630 * 159.99814 * 9 7 6 12 12 C 1.52991 * 109.47266 * 279.99978 * 9 7 6 13 13 C 1.52998 * 109.47440 * 175.00419 * 12 9 7 14 14 C 1.50696 * 109.47711 * 179.97438 * 13 12 9 15 15 H 1.08008 * 119.99557 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00222 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47446 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46748 * 120.00510 * 18 16 14 21 21 H 1.48501 * 109.47081 * 239.99947 * 18 16 14 22 22 C 1.46925 * 118.73914 * 306.39111 * 6 5 4 23 23 C 1.53037 * 109.46300 * 119.97485 * 2 1 3 24 24 H 1.09001 * 109.52544 * 61.40618 * 23 2 1 25 25 C 1.52998 * 109.50033 * 301.32547 * 23 2 1 26 26 N 1.46898 * 109.47375 * 175.16133 * 25 23 2 27 27 H 1.08998 * 109.46704 * 300.01854 * 1 2 3 28 28 H 1.08993 * 109.47252 * 60.02426 * 1 2 3 29 29 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.50069 * 58.67050 * 4 2 1 31 31 H 1.09000 * 109.49902 * 298.56731 * 4 2 1 32 32 H 1.09006 * 109.58809 * 294.84764 * 5 4 2 33 33 H 1.09002 * 109.58657 * 174.42750 * 5 4 2 34 34 H 1.00898 * 111.00304 * 296.04192 * 11 9 7 35 35 H 1.00903 * 110.99629 * 60.00176 * 11 9 7 36 36 H 1.09003 * 109.47162 * 295.00110 * 12 9 7 37 37 H 1.08999 * 109.47428 * 55.00031 * 12 9 7 38 38 H 1.09003 * 109.46691 * 299.99979 * 13 12 9 39 39 H 1.08999 * 109.47127 * 59.99428 * 13 12 9 40 40 H 0.97001 * 119.99960 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.58340 * 173.39503 * 22 6 5 42 42 H 1.09003 * 109.58494 * 293.68068 * 22 6 5 43 43 H 1.09006 * 109.46964 * 295.16380 * 25 23 2 44 44 H 1.09002 * 109.46887 * 55.16018 * 25 23 2 45 45 H 1.00902 * 110.99741 * 180.02562 * 26 25 23 46 46 H 1.00896 * 111.00122 * 303.95110 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7207 -1.2503 5 6 3.5711 -0.6888 -1.2646 6 7 4.0677 -1.2492 -0.0005 7 6 4.9618 -2.2578 -0.0007 8 8 5.3644 -2.7114 1.0495 9 6 5.4620 -2.8209 -1.3060 10 1 5.6248 -2.0082 -2.0137 11 7 6.7265 -3.5334 -1.0792 12 6 4.4245 -3.7914 -1.8737 13 6 4.8743 -4.2676 -3.2564 14 6 3.8527 -5.2240 -3.8154 15 1 2.9708 -5.4682 -3.2415 16 6 4.0437 -5.7873 -5.0592 17 7 5.1177 -5.4903 -5.7577 18 14 2.7776 -6.9735 -5.7517 19 1 1.6700 -7.1401 -4.7767 20 1 2.2381 -6.4334 -7.0255 21 1 3.4179 -8.2894 -6.0038 22 6 3.5715 -0.6890 1.2639 23 6 2.0400 -0.7209 1.2499 24 1 1.6978 -1.7558 1.2387 25 6 1.5032 -0.0191 2.4990 26 7 1.8965 -0.7775 3.6940 27 1 -0.3633 0.5141 0.8898 28 1 -0.3633 0.5134 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6569 -0.2206 -2.1399 31 1 1.6974 -1.7556 -1.2385 32 1 3.9142 0.3407 -1.3676 33 1 3.9412 -1.2846 -2.0989 34 1 7.4469 -2.9006 -0.7652 35 1 6.6018 -4.2923 -0.4260 36 1 4.3268 -4.6491 -1.2081 37 1 3.4624 -3.2861 -1.9587 38 1 4.9720 -3.4099 -3.9219 39 1 5.8363 -4.7729 -3.1714 40 1 5.2523 -5.8869 -6.6326 41 1 3.9418 -1.2851 2.0979 42 1 3.9167 0.3397 1.3682 43 1 1.9161 0.9881 2.5556 44 1 0.4159 0.0365 2.4455 45 1 1.5532 -0.3341 4.5328 46 1 1.5804 -1.7339 3.6356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424192130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:41 Heat of formation + Delta-G solvation = -84.406468 kcal Electronic energy + Delta-G solvation = -23626.827058 eV Core-core repulsion = 20355.906893 eV Total energy + Delta-G solvation = -3270.920165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.57518 -39.39849 -36.89854 -36.06011 -34.81403 -34.44980 -31.95070 -31.56492 -29.49548 -28.11134 -26.37600 -25.18117 -23.99060 -22.73824 -22.12502 -21.09773 -19.90671 -18.58995 -18.22710 -17.30816 -16.93795 -16.71392 -16.44752 -16.03187 -15.90812 -15.57134 -15.16706 -15.04009 -14.46023 -14.30439 -14.26110 -14.07841 -13.78054 -13.62679 -13.44075 -13.15322 -12.82238 -12.73551 -12.66399 -12.48391 -12.22419 -11.99224 -11.85893 -11.72248 -11.64622 -11.38415 -11.28667 -11.14851 -10.94124 -10.48884 -9.71837 -9.63533 -9.46452 -8.13209 -6.23317 1.41295 1.42530 1.49134 1.55016 2.01548 2.44870 3.19909 3.43134 3.52628 3.67546 3.75885 3.77647 3.96362 4.06001 4.08509 4.24004 4.29460 4.38731 4.49925 4.53320 4.65858 4.72045 4.73022 4.76984 4.86435 4.91095 4.94984 5.01081 5.06503 5.13550 5.21370 5.24023 5.37911 5.51326 5.57350 5.57606 5.83922 5.98523 6.07698 6.22724 6.30713 6.35142 6.49515 6.58290 6.94642 7.08274 7.44736 8.98227 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.004337 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.979674 B = 6454.087637 C = 7334.345078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.089 0.911 4 C -0.129 4.129 5 C 0.095 3.905 6 N -0.604 5.604 7 C 0.485 3.515 8 O -0.585 6.585 9 C 0.085 3.915 10 H 0.108 0.892 11 N -0.818 5.818 12 C -0.079 4.079 13 C 0.042 3.958 14 C -0.541 4.541 15 H 0.053 0.947 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.281 1.281 22 C 0.124 3.876 23 C -0.087 4.087 24 H 0.051 0.949 25 C 0.072 3.928 26 N -0.864 5.864 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.346 0.654 35 H 0.344 0.656 36 H 0.037 0.963 37 H 0.065 0.935 38 H -0.004 1.004 39 H 0.004 0.996 40 H 0.262 0.738 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.351 0.649 46 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 16.212 13.904 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 H 0.107 0.893 4 C -0.167 4.167 5 C -0.027 4.027 6 N -0.336 5.336 7 C 0.272 3.728 8 O -0.466 6.466 9 C -0.030 4.030 10 H 0.126 0.874 11 N -0.347 5.347 12 C -0.117 4.117 13 C 0.005 3.995 14 C -0.579 4.579 15 H 0.072 0.928 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.783 3.217 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.207 1.207 22 C 0.002 3.998 23 C -0.107 4.107 24 H 0.069 0.931 25 C -0.059 4.059 26 N -0.395 5.395 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.014 0.986 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.165 0.835 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.633 15.942 13.283 22.475 hybrid contribution -1.365 -0.796 0.596 1.689 sum -9.998 15.145 13.879 22.847 Atomic orbital electron populations 1.21874 0.94041 1.01636 1.02742 1.21103 0.96462 0.99712 0.92644 0.89318 1.21984 0.94004 1.01138 0.99550 1.22073 0.95414 1.00263 0.84974 1.48328 1.42182 1.34560 1.08559 1.22398 0.78753 0.79057 0.92611 1.90616 1.59917 1.61281 1.34792 1.21640 0.91643 0.97361 0.92366 0.87424 1.59010 1.06370 1.14383 1.54915 1.21385 0.96146 0.96491 0.97684 1.18807 0.95600 0.94676 0.90447 1.21708 1.07050 1.26878 1.02266 0.92847 1.25866 0.97489 0.98509 0.97529 1.70108 1.28533 1.45337 1.12920 0.85508 0.79186 0.78592 0.78393 1.18923 1.20136 1.20737 1.21570 0.94065 0.98717 0.85497 1.21485 0.94095 0.99481 0.95627 0.93069 1.21834 0.98123 0.97460 0.88509 1.58679 1.69016 1.06771 1.05010 0.91245 0.91604 0.93762 0.88573 0.93164 0.88871 0.89848 0.84109 0.84257 0.94415 0.91619 0.98551 0.97706 0.92916 0.90980 0.90737 0.90182 0.93388 0.83517 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.81 71.98 0.63 -1.29 16 2 C -0.08 -1.24 2.23 -10.76 -0.02 -1.27 16 3 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 4 C -0.13 -2.49 5.36 30.67 0.16 -2.33 16 5 C 0.09 2.09 5.76 86.36 0.50 2.59 16 6 N -0.60 -16.28 2.97 -818.89 -2.43 -18.71 16 7 C 0.48 16.43 6.94 87.66 0.61 17.04 16 8 O -0.59 -23.28 15.66 -3.02 -0.05 -23.32 16 9 C 0.09 3.02 2.29 44.17 0.10 3.12 16 10 H 0.11 3.55 6.80 -2.39 -0.02 3.54 16 11 N -0.82 -29.38 8.44 -171.80 -1.45 -30.83 16 12 C -0.08 -3.29 4.45 30.59 0.14 -3.15 16 13 C 0.04 2.20 4.86 29.85 0.15 2.34 16 14 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 15 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 18 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 C 0.12 2.95 5.53 86.36 0.48 3.43 16 23 C -0.09 -1.63 2.02 -10.72 -0.02 -1.65 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 C 0.07 1.02 5.93 86.30 0.51 1.53 16 26 N -0.86 -13.47 9.19 -186.72 -1.72 -15.18 16 27 H 0.07 0.74 6.30 -2.39 -0.02 0.72 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.08 2.13 4.83 -2.39 -0.01 2.12 16 34 H 0.35 10.76 9.06 -89.70 -0.81 9.95 16 35 H 0.34 12.70 8.58 -89.69 -0.77 11.93 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.56 6.96 -2.39 -0.02 2.55 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.07 2.16 6.78 -2.39 -0.02 2.15 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.05 0.57 6.15 -2.39 -0.01 0.55 16 45 H 0.35 3.97 9.08 -89.69 -0.81 3.16 16 46 H 0.34 5.45 8.99 -89.70 -0.81 4.65 16 Total: -1.00 -69.99 356.08 -1.61 -71.59 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -2.20 Total: 35.81 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 3.93 Total: -9.56 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -5.31 Total: -120.98 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -69.99 -1.61 -71.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.812 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds