Wall clock time and date at job start Wed Apr 15 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53047 * 109.45890 * 240.03136 * 2 1 3 5 5 C 1.53158 * 109.32738 * 301.35739 * 4 2 1 6 6 N 1.46928 * 108.76784 * 305.35696 * 5 4 2 7 7 C 1.34785 * 120.62870 * 233.63272 * 6 5 4 8 8 O 1.21285 * 119.99732 * 179.97438 * 7 6 5 9 9 C 1.50695 * 119.99784 * 359.97438 * 7 6 5 10 10 H 1.08994 * 109.47643 * 40.00191 * 9 7 6 11 11 N 1.46906 * 109.46791 * 160.00136 * 9 7 6 12 12 C 1.53002 * 109.47000 * 279.99670 * 9 7 6 13 13 C 1.53002 * 109.46846 * 175.00031 * 12 9 7 14 14 C 1.50695 * 109.47077 * 180.02562 * 13 12 9 15 15 H 1.08008 * 119.99951 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00332 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99456 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00270 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46723 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46932 * 119.99965 * 18 16 14 21 21 H 1.48496 * 109.47253 * 239.99953 * 18 16 14 22 22 C 1.46923 * 118.73888 * 53.60697 * 6 5 4 23 23 C 1.53040 * 109.46295 * 119.97855 * 2 1 3 24 24 H 1.09001 * 109.49828 * 178.61023 * 23 2 1 25 25 C 1.53005 * 109.49377 * 298.66838 * 23 2 1 26 26 N 1.46899 * 109.47201 * 184.99611 * 25 23 2 27 27 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 30 30 H 1.09000 * 109.49736 * 61.29961 * 4 2 1 31 31 H 1.08999 * 109.49490 * 181.39072 * 4 2 1 32 32 H 1.08998 * 109.59020 * 185.57414 * 5 4 2 33 33 H 1.08998 * 109.71140 * 65.21129 * 5 4 2 34 34 H 1.00905 * 111.00064 * 59.99761 * 11 9 7 35 35 H 1.00899 * 111.00050 * 183.95190 * 11 9 7 36 36 H 1.09000 * 109.47298 * 295.00414 * 12 9 7 37 37 H 1.08997 * 109.46928 * 55.00480 * 12 9 7 38 38 H 1.08997 * 109.47451 * 300.00800 * 13 12 9 39 39 H 1.09005 * 109.46743 * 60.00349 * 13 12 9 40 40 H 0.97001 * 119.99424 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.58786 * 186.60207 * 22 6 5 42 42 H 1.08998 * 109.58667 * 66.18245 * 22 6 5 43 43 H 1.09001 * 109.47238 * 305.00370 * 25 23 2 44 44 H 1.08998 * 109.46928 * 65.00317 * 25 23 2 45 45 H 1.00897 * 111.00033 * 179.97438 * 26 25 23 46 46 H 1.00892 * 111.00252 * 303.96210 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 1.4996 -2.1539 -1.2647 6 7 1.8625 -2.8088 -0.0005 7 6 2.5165 -3.9874 -0.0008 8 8 2.8109 -4.5177 1.0495 9 6 2.8817 -4.6461 -1.3060 10 1 3.2166 -3.8883 -2.0143 11 7 3.9617 -5.6160 -1.0796 12 6 1.6579 -5.3686 -1.8727 13 6 1.9928 -5.9314 -3.2554 14 6 0.7873 -6.6425 -3.8138 15 1 -0.1266 -6.6881 -3.2400 16 6 0.8508 -7.2350 -5.0572 17 7 1.9638 -7.1799 -5.7557 18 14 -0.6438 -8.1158 -5.7497 19 1 -1.7614 -8.0352 -4.7752 20 1 -1.0515 -7.4718 -7.0241 21 1 -0.3068 -9.5401 -6.0006 22 6 1.4996 -2.1543 1.2638 23 6 2.0399 -0.7210 1.2499 24 1 3.1296 -0.7430 1.2381 25 6 1.5576 0.0195 2.4990 26 7 2.1447 -0.6017 3.6937 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6958 -0.1935 -2.1399 31 1 3.1295 -0.7428 -1.2383 32 1 1.9382 -2.7014 -2.0989 33 1 0.4147 -2.1368 -1.3690 34 1 3.6757 -6.3295 -0.4259 35 1 4.2689 -6.0247 -1.9495 36 1 1.3769 -6.1844 -1.2066 37 1 0.8284 -4.6666 -1.9573 38 1 2.2740 -5.1157 -3.9214 39 1 2.8224 -6.6335 -3.1707 40 1 2.0084 -7.5963 -6.6306 41 1 1.9382 -2.7021 2.0979 42 1 0.4147 -2.1349 1.3669 43 1 1.8653 1.0637 2.4438 44 1 0.4706 -0.0364 2.5574 45 1 1.8415 -0.1300 4.5325 46 1 1.9273 -1.5861 3.7333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424192131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:45 Heat of formation + Delta-G solvation = -57.253059 kcal Electronic energy + Delta-G solvation = -23616.437642 eV Core-core repulsion = 20346.694937 eV Total energy + Delta-G solvation = -3269.742705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52535 -38.39665 -35.54089 -35.11336 -33.38662 -32.85592 -30.67354 -29.88460 -27.98552 -26.89978 -25.27599 -24.73097 -23.30385 -21.79942 -20.60362 -19.40774 -18.25181 -17.49449 -16.42030 -16.16293 -15.91954 -15.45103 -15.09398 -14.98161 -14.52627 -14.39740 -13.93134 -13.73611 -13.63514 -13.43655 -13.25572 -12.93461 -12.71581 -12.26799 -12.09207 -11.87505 -11.65544 -11.47489 -11.28467 -11.09703 -10.96666 -10.89114 -10.67576 -10.60539 -10.50224 -9.99155 -9.86083 -9.25910 -9.15330 -8.92190 -8.48748 -8.45144 -8.15500 -6.09596 -4.12580 2.94955 3.09703 3.25170 3.33344 3.37138 4.21033 4.38301 4.50513 4.53694 4.65917 4.85296 4.91132 5.08046 5.13378 5.19811 5.20883 5.26844 5.30157 5.34805 5.43614 5.50915 5.59192 5.67835 5.70362 5.77237 5.79893 5.84522 5.94310 6.01640 6.09486 6.26753 6.28745 6.51707 6.62305 6.86655 6.86785 7.15410 7.42297 7.51260 7.60004 7.67043 7.87674 7.93043 8.30388 8.47710 8.93554 9.52410 11.01307 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.003827 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.498418 B = 7314.609206 C = 7863.020627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.130 4.130 5 C 0.101 3.899 6 N -0.612 5.612 7 C 0.528 3.472 8 O -0.539 6.539 9 C 0.074 3.926 10 H 0.097 0.903 11 N -0.831 5.831 12 C -0.138 4.138 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.115 3.885 23 C -0.097 4.097 24 H 0.083 0.917 25 C 0.069 3.931 26 N -0.853 5.853 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.345 0.655 35 H 0.354 0.646 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.340 0.660 46 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 16.140 12.185 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.169 4.169 5 C -0.022 4.022 6 N -0.346 5.346 7 C 0.317 3.683 8 O -0.415 6.415 9 C -0.041 4.041 10 H 0.114 0.886 11 N -0.363 5.363 12 C -0.178 4.178 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.008 4.008 23 C -0.116 4.116 24 H 0.102 0.898 25 C -0.062 4.062 26 N -0.384 5.384 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.152 0.848 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.785 16.607 12.550 20.831 hybrid contribution -2.541 -1.299 -0.737 2.947 sum -3.326 15.309 11.812 19.620 Atomic orbital electron populations 1.22017 0.95221 1.02357 1.01684 1.21082 0.95926 0.99167 0.94232 0.90943 1.21954 1.01407 0.95543 0.97971 1.21883 1.00630 0.93260 0.86399 1.48000 1.58416 1.21518 1.06706 1.20890 0.75810 0.79887 0.91738 1.90615 1.53682 1.63447 1.33799 1.21506 0.93494 0.96257 0.92804 0.88562 1.58754 1.37691 1.22079 1.17734 1.22400 0.95562 0.99291 1.00536 1.19101 0.97177 0.95917 0.89047 1.21213 0.98240 1.34630 1.02009 0.92700 1.25012 0.96016 0.96262 0.97022 1.69960 1.25934 1.44699 1.12554 0.86538 0.83037 0.79489 0.78971 1.19773 1.20941 1.20946 1.21567 0.99095 0.92453 0.87642 1.21561 1.01737 0.94518 0.93815 0.89834 1.21822 0.96126 0.98499 0.89763 1.58704 1.66981 1.07944 1.04737 0.92688 0.92030 0.92448 0.90402 0.91240 0.88696 0.90992 0.84177 0.83123 0.92726 0.92502 0.96365 0.96392 0.92938 0.89142 0.92070 0.90915 0.95167 0.84801 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.12 37.16 0.30 -0.93 16 2 C -0.08 -0.73 2.71 -90.58 -0.25 -0.98 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.26 5.62 -26.63 -0.15 -1.41 16 5 C 0.10 1.20 5.11 -3.73 -0.02 1.18 16 6 N -0.61 -8.48 2.97 -172.79 -0.51 -9.00 16 7 C 0.53 9.15 6.95 -10.98 -0.08 9.08 16 8 O -0.54 -10.87 15.66 5.55 0.09 -10.78 16 9 C 0.07 1.30 2.35 -68.86 -0.16 1.14 16 10 H 0.10 1.60 6.54 -51.93 -0.34 1.26 16 11 N -0.83 -14.76 8.94 -5.65 -0.05 -14.81 16 12 C -0.14 -2.73 4.55 -26.73 -0.12 -2.85 16 13 C 0.02 0.60 4.74 -27.88 -0.13 0.46 16 14 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.12 1.38 4.89 -3.72 -0.02 1.36 16 23 C -0.10 -0.95 2.32 -90.50 -0.21 -1.16 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 C 0.07 0.57 5.78 -3.82 -0.02 0.55 16 26 N -0.85 -7.39 9.62 -10.37 -0.10 -7.49 16 27 H 0.05 0.39 6.58 -51.93 -0.34 0.05 16 28 H 0.06 0.55 4.98 -51.93 -0.26 0.30 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.23 5.18 -51.93 -0.27 0.96 16 33 H 0.07 0.81 6.70 -51.93 -0.35 0.46 16 34 H 0.35 6.21 8.58 -39.29 -0.34 5.88 16 35 H 0.35 6.24 7.55 -39.29 -0.30 5.94 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.08 7.20 -51.93 -0.37 0.71 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.09 1.23 5.82 -51.93 -0.30 0.93 16 42 H 0.06 0.67 6.69 -51.93 -0.35 0.32 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.23 6.73 -51.93 -0.35 -0.12 16 45 H 0.34 2.25 9.08 -39.29 -0.36 1.90 16 46 H 0.34 3.06 7.39 -39.30 -0.29 2.77 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.09 346.12 -8.40 -39.49 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -7.49 Total: 12.96 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.27 Total: -6.61 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.07 Total: -56.41 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.09 -8.40 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.765 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds