Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53047 * 109.45890 * 240.03136 * 2 1 3 5 5 C 1.53158 * 109.32738 * 301.35739 * 4 2 1 6 6 N 1.46928 * 108.76784 * 305.35696 * 5 4 2 7 7 C 1.34785 * 120.62870 * 233.63272 * 6 5 4 8 8 O 1.21285 * 119.99732 * 179.97438 * 7 6 5 9 9 C 1.50695 * 119.99784 * 359.97438 * 7 6 5 10 10 H 1.08994 * 109.47643 * 40.00191 * 9 7 6 11 11 N 1.46906 * 109.46791 * 160.00136 * 9 7 6 12 12 C 1.53002 * 109.47000 * 279.99670 * 9 7 6 13 13 C 1.53002 * 109.46846 * 175.00031 * 12 9 7 14 14 C 1.50695 * 109.47077 * 180.02562 * 13 12 9 15 15 H 1.08008 * 119.99951 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00332 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99456 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00270 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46723 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46932 * 119.99965 * 18 16 14 21 21 H 1.48496 * 109.47253 * 239.99953 * 18 16 14 22 22 C 1.46923 * 118.73888 * 53.60697 * 6 5 4 23 23 C 1.53040 * 109.46295 * 119.97855 * 2 1 3 24 24 H 1.09001 * 109.49828 * 178.61023 * 23 2 1 25 25 C 1.53005 * 109.49377 * 298.66838 * 23 2 1 26 26 N 1.46899 * 109.47201 * 184.99611 * 25 23 2 27 27 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 30 30 H 1.09000 * 109.49736 * 61.29961 * 4 2 1 31 31 H 1.08999 * 109.49490 * 181.39072 * 4 2 1 32 32 H 1.08998 * 109.59020 * 185.57414 * 5 4 2 33 33 H 1.08998 * 109.71140 * 65.21129 * 5 4 2 34 34 H 1.00905 * 111.00064 * 59.99761 * 11 9 7 35 35 H 1.00899 * 111.00050 * 183.95190 * 11 9 7 36 36 H 1.09000 * 109.47298 * 295.00414 * 12 9 7 37 37 H 1.08997 * 109.46928 * 55.00480 * 12 9 7 38 38 H 1.08997 * 109.47451 * 300.00800 * 13 12 9 39 39 H 1.09005 * 109.46743 * 60.00349 * 13 12 9 40 40 H 0.97001 * 119.99424 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.58786 * 186.60207 * 22 6 5 42 42 H 1.08998 * 109.58667 * 66.18245 * 22 6 5 43 43 H 1.09001 * 109.47238 * 305.00370 * 25 23 2 44 44 H 1.08998 * 109.46928 * 65.00317 * 25 23 2 45 45 H 1.00897 * 111.00033 * 179.97438 * 26 25 23 46 46 H 1.00892 * 111.00252 * 303.96210 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 1.4996 -2.1539 -1.2647 6 7 1.8625 -2.8088 -0.0005 7 6 2.5165 -3.9874 -0.0008 8 8 2.8109 -4.5177 1.0495 9 6 2.8817 -4.6461 -1.3060 10 1 3.2166 -3.8883 -2.0143 11 7 3.9617 -5.6160 -1.0796 12 6 1.6579 -5.3686 -1.8727 13 6 1.9928 -5.9314 -3.2554 14 6 0.7873 -6.6425 -3.8138 15 1 -0.1266 -6.6881 -3.2400 16 6 0.8508 -7.2350 -5.0572 17 7 1.9638 -7.1799 -5.7557 18 14 -0.6438 -8.1158 -5.7497 19 1 -1.7614 -8.0352 -4.7752 20 1 -1.0515 -7.4718 -7.0241 21 1 -0.3068 -9.5401 -6.0006 22 6 1.4996 -2.1543 1.2638 23 6 2.0399 -0.7210 1.2499 24 1 3.1296 -0.7430 1.2381 25 6 1.5576 0.0195 2.4990 26 7 2.1447 -0.6017 3.6937 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6958 -0.1935 -2.1399 31 1 3.1295 -0.7428 -1.2383 32 1 1.9382 -2.7014 -2.0989 33 1 0.4147 -2.1368 -1.3690 34 1 3.6757 -6.3295 -0.4259 35 1 4.2689 -6.0247 -1.9495 36 1 1.3769 -6.1844 -1.2066 37 1 0.8284 -4.6666 -1.9573 38 1 2.2740 -5.1157 -3.9214 39 1 2.8224 -6.6335 -3.1707 40 1 2.0084 -7.5963 -6.6306 41 1 1.9382 -2.7021 2.0979 42 1 0.4147 -2.1349 1.3669 43 1 1.8653 1.0637 2.4438 44 1 0.4706 -0.0364 2.5574 45 1 1.8415 -0.1300 4.5325 46 1 1.9273 -1.5861 3.7333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424192131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = -80.505272 kcal Electronic energy + Delta-G solvation = -23617.445934 eV Core-core repulsion = 20346.694937 eV Total energy + Delta-G solvation = -3270.750997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64912 -39.51193 -37.13326 -36.02125 -34.84242 -34.30720 -31.70397 -31.54171 -28.98103 -28.14029 -26.67997 -25.62765 -24.83429 -22.61969 -22.28221 -20.57737 -19.33702 -18.77264 -18.28138 -17.30648 -16.74060 -16.57327 -16.34263 -16.16225 -15.94206 -15.66517 -15.35920 -14.99906 -14.63421 -14.41808 -14.36079 -14.19644 -13.89722 -13.81311 -13.47946 -13.02504 -12.90401 -12.66540 -12.62122 -12.50209 -12.23083 -12.14180 -11.83793 -11.73053 -11.70279 -11.43251 -11.30311 -11.27876 -10.64828 -10.56465 -9.70269 -9.58157 -9.54270 -8.21516 -6.31819 1.38681 1.40397 1.51941 1.57614 1.93982 2.39904 3.12199 3.43708 3.55477 3.69065 3.76901 3.82044 3.99961 4.02855 4.07108 4.19926 4.26029 4.33870 4.42669 4.50160 4.63035 4.63674 4.67428 4.74627 4.82022 4.86310 4.94197 5.03082 5.07227 5.09730 5.16810 5.26534 5.35767 5.46020 5.54401 5.56697 5.64080 5.79977 6.04070 6.20748 6.22605 6.36229 6.45646 6.56669 6.83296 7.14855 7.37334 8.89435 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.003827 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.498418 B = 7314.609206 C = 7863.020627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 H 0.089 0.911 4 C -0.126 4.126 5 C 0.095 3.905 6 N -0.604 5.604 7 C 0.524 3.476 8 O -0.574 6.574 9 C 0.082 3.918 10 H 0.106 0.894 11 N -0.831 5.831 12 C -0.119 4.119 13 C 0.032 3.968 14 C -0.543 4.543 15 H 0.054 0.946 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.959 3.041 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.281 1.281 22 C 0.114 3.886 23 C -0.088 4.088 24 H 0.060 0.940 25 C 0.074 3.926 26 N -0.866 5.866 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.343 0.657 35 H 0.353 0.647 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.003 0.997 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.351 0.649 46 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 17.777 12.287 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.027 4.027 6 N -0.337 5.337 7 C 0.312 3.688 8 O -0.453 6.453 9 C -0.033 4.033 10 H 0.124 0.876 11 N -0.362 5.362 12 C -0.159 4.159 13 C -0.005 4.005 14 C -0.581 4.581 15 H 0.072 0.928 16 C -0.192 4.192 17 N -0.566 5.566 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.206 1.206 22 C -0.008 4.008 23 C -0.108 4.108 24 H 0.078 0.922 25 C -0.057 4.057 26 N -0.397 5.397 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.165 0.835 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.389 18.293 12.657 22.372 hybrid contribution -2.032 -1.773 -0.763 2.802 sum -4.420 16.520 11.894 20.830 Atomic orbital electron populations 1.21989 0.94246 1.01889 1.02824 1.21078 0.96604 0.99542 0.92693 0.89292 1.21947 1.00828 0.94138 0.99546 1.22073 1.01371 0.94396 0.84899 1.48060 1.56772 1.20451 1.08376 1.20774 0.76274 0.80859 0.90880 1.90597 1.55440 1.64703 1.34561 1.21416 0.92320 0.96187 0.93418 0.87621 1.58766 1.37731 1.22116 1.17579 1.22131 0.96881 0.99067 0.97821 1.18951 0.95718 0.94880 0.90959 1.21619 0.99099 1.34981 1.02422 0.92780 1.25854 0.98903 0.97033 0.97447 1.70068 1.27897 1.45610 1.12998 0.85491 0.79556 0.78169 0.78390 1.19012 1.20162 1.20647 1.21711 0.99867 0.93307 0.85948 1.21474 1.00191 0.93445 0.95678 0.92196 1.21802 0.96792 0.98513 0.88640 1.58710 1.67471 1.07971 1.05594 0.91473 0.93215 0.91491 0.88436 0.92153 0.89936 0.89815 0.84368 0.83240 0.93932 0.91599 0.97829 0.98040 0.92724 0.91040 0.90596 0.89920 0.93841 0.83521 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.12 71.98 0.58 -1.35 16 2 C -0.08 -1.17 2.71 -10.77 -0.03 -1.20 16 3 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.13 -2.18 5.62 30.66 0.17 -2.01 16 5 C 0.09 2.12 5.11 86.35 0.44 2.57 16 6 N -0.60 -16.42 2.97 -818.98 -2.43 -18.85 16 7 C 0.52 18.26 6.95 87.65 0.61 18.87 16 8 O -0.57 -23.53 15.66 -3.04 -0.05 -23.58 16 9 C 0.08 2.88 2.35 44.17 0.10 2.98 16 10 H 0.11 3.53 6.54 -2.39 -0.02 3.51 16 11 N -0.83 -30.11 8.94 -171.80 -1.54 -31.64 16 12 C -0.12 -4.75 4.55 30.60 0.14 -4.61 16 13 C 0.03 1.58 4.74 29.85 0.14 1.72 16 14 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.34 5.46 84.66 0.46 0.80 16 17 N -0.93 -53.99 13.29 21.45 0.28 -53.71 16 18 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.11 2.62 4.89 86.36 0.42 3.04 16 23 C -0.09 -1.61 2.32 -10.72 -0.02 -1.63 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 C 0.07 1.05 5.78 86.30 0.50 1.55 16 26 N -0.87 -13.93 9.62 -186.71 -1.80 -15.73 16 27 H 0.07 0.70 6.58 -2.39 -0.02 0.69 16 28 H 0.05 0.76 4.98 -2.39 -0.01 0.74 16 29 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 2.07 5.18 -2.39 -0.01 2.06 16 33 H 0.08 1.72 6.70 -2.39 -0.02 1.70 16 34 H 0.34 12.68 8.58 -89.69 -0.77 11.92 16 35 H 0.35 12.78 7.55 -89.69 -0.68 12.10 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.48 7.20 -2.39 -0.02 2.46 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.00 0.07 6.87 -2.38 -0.02 0.05 16 40 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.07 1.95 5.82 -2.38 -0.01 1.94 16 42 H 0.08 1.54 6.69 -2.39 -0.02 1.53 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.04 0.52 6.73 -2.39 -0.02 0.51 16 45 H 0.35 4.13 9.08 -89.70 -0.81 3.31 16 46 H 0.34 5.88 7.39 -89.70 -0.66 5.22 16 Total: -1.00 -66.41 346.12 -1.65 -68.06 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -1.90 Total: 39.06 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 3.75 Total: -8.77 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -5.48 Total: -119.93 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -66.41 -1.65 -68.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.448 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds