Wall clock time and date at job start Wed Apr 15 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47111 * 2 1 4 4 C 1.50695 * 109.46840 * 120.00478 * 2 1 3 5 5 O 1.21286 * 119.99937 * 93.70724 * 4 2 1 6 6 N 1.34779 * 120.00272 * 273.69586 * 4 2 1 7 7 C 1.46503 * 119.99687 * 4.35710 * 6 4 2 8 8 C 1.46499 * 120.00496 * 184.34953 * 6 4 2 9 9 C 1.50699 * 109.47275 * 270.00784 * 8 6 4 10 10 H 1.08005 * 119.99912 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00232 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00384 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99685 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47120 * 270.00117 * 13 11 9 15 15 H 1.48505 * 109.46830 * 30.00386 * 13 11 9 16 16 H 1.48501 * 109.46959 * 150.00013 * 13 11 9 17 17 N 1.46900 * 109.46843 * 240.00149 * 2 1 3 18 18 C 1.46952 * 110.99894 * 182.64510 * 17 2 1 19 19 C 1.53055 * 109.36477 * 176.81689 * 18 17 2 20 20 N 1.46949 * 109.36671 * 58.39655 * 19 18 17 21 21 C 1.46902 * 111.00275 * 176.81175 * 20 19 18 22 22 C 1.46952 * 110.88290 * 300.68284 * 20 19 18 23 23 H 1.09000 * 109.49091 * 299.34836 * 22 20 19 24 24 C 1.53005 * 109.48965 * 179.28771 * 22 20 19 25 25 C 1.46959 * 110.99837 * 58.84375 * 17 2 1 26 26 H 1.09000 * 109.47643 * 173.90053 * 1 2 3 27 27 H 1.09001 * 109.46705 * 293.89972 * 1 2 3 28 28 H 1.08996 * 109.47090 * 53.89510 * 1 2 3 29 29 H 1.09001 * 109.46771 * 272.01671 * 7 6 4 30 30 H 1.09002 * 109.47213 * 32.01349 * 7 6 4 31 31 H 1.08996 * 109.47303 * 152.01005 * 7 6 4 32 32 H 1.08992 * 109.47100 * 150.00152 * 8 6 4 33 33 H 1.09000 * 109.46626 * 30.00287 * 8 6 4 34 34 H 0.96993 * 120.00151 * 180.02562 * 12 11 9 35 35 H 1.08999 * 109.49158 * 296.77669 * 18 17 2 36 36 H 1.08997 * 109.49119 * 56.84712 * 18 17 2 37 37 H 1.09007 * 109.48244 * 298.42952 * 19 18 17 38 38 H 1.09003 * 109.49162 * 178.36745 * 19 18 17 39 39 H 1.08994 * 109.47530 * 183.80128 * 21 20 19 40 40 H 1.08995 * 109.47330 * 303.80612 * 21 20 19 41 41 H 1.09010 * 109.46901 * 63.80020 * 21 20 19 42 42 H 1.09001 * 109.46912 * 300.10974 * 24 22 20 43 43 H 1.08991 * 109.47126 * 60.10873 * 24 22 20 44 44 H 1.09008 * 109.47089 * 180.11067 * 24 22 20 45 45 H 1.08991 * 109.49307 * 303.15581 * 25 17 2 46 46 H 1.09003 * 109.48921 * 63.19813 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.2984 -1.8928 1.1817 6 7 2.1860 -0.0321 2.3848 7 6 1.7752 1.3716 2.4698 8 6 2.7636 -0.6984 3.5547 9 6 1.6631 -1.3317 4.3665 10 1 0.6361 -1.2461 4.0434 11 6 1.9674 -2.0204 5.5215 12 7 1.0071 -2.5735 6.2296 13 14 3.7438 -2.1691 6.0798 14 1 4.3482 -3.3897 5.4881 15 1 4.5044 -0.9740 5.6339 16 1 3.7911 -2.2614 7.5612 17 7 2.0196 -0.6925 -1.1995 18 6 3.4872 -0.7672 -1.2022 19 6 3.9526 -1.5628 -2.4241 20 7 3.4589 -0.9125 -3.6459 21 6 3.9486 -1.6049 -4.8455 22 6 1.9913 -0.8378 -3.6432 23 1 1.5760 -1.8447 -3.6012 24 6 1.5132 -0.1408 -4.9186 25 6 1.5259 -0.0422 -2.4214 26 1 -0.3634 -1.0218 -0.1092 27 1 -0.3633 0.4164 0.9396 28 1 -0.3633 0.6055 -0.8303 29 1 2.6014 2.0113 2.1594 30 1 0.9197 1.5400 1.8157 31 1 1.4989 1.6077 3.4974 32 1 3.2909 0.0337 4.1662 33 1 3.4619 -1.4682 3.2264 34 1 1.2211 -3.0577 7.0424 35 1 3.9026 0.2397 -1.2443 36 1 3.8278 -1.2637 -0.2937 37 1 3.5596 -2.5780 -2.3682 38 1 5.0420 -1.5948 -2.4440 39 1 3.6244 -1.0644 -5.7348 40 1 5.0375 -1.6462 -4.8221 41 1 3.5470 -2.6181 -4.8696 42 1 1.9297 0.8656 -4.9605 43 1 1.8448 -0.7077 -5.7885 44 1 0.4247 -0.0838 -4.9153 45 1 0.4366 -0.0101 -2.4016 46 1 1.9186 0.9731 -2.4771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761072835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:51 Heat of formation + Delta-G solvation = -8.051152 kcal Electronic energy + Delta-G solvation = -23895.290366 eV Core-core repulsion = 20627.681216 eV Total energy + Delta-G solvation = -3267.609150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10974 -38.70097 -35.79257 -34.82202 -32.63442 -32.52319 -31.34094 -28.54221 -27.62494 -27.05098 -25.97354 -24.47083 -23.02237 -22.28096 -21.14134 -19.70853 -18.30282 -16.92826 -16.72934 -16.25228 -15.73556 -15.21020 -15.07398 -14.81546 -14.39398 -14.27550 -14.03284 -13.69287 -13.16781 -13.05724 -12.85202 -12.41191 -12.26867 -12.24377 -12.15832 -12.01990 -11.83564 -11.71779 -11.59441 -11.45924 -11.23319 -11.13031 -10.90338 -10.71361 -10.54927 -10.48742 -10.12664 -9.51360 -8.87839 -8.57146 -8.46749 -8.16425 -7.66768 -6.06670 -4.05088 3.29882 3.33030 3.35846 3.37711 3.59019 3.78001 4.11382 4.41023 4.69395 4.82712 4.90843 5.02579 5.18042 5.23167 5.25638 5.29554 5.31377 5.33722 5.40205 5.47150 5.52459 5.57626 5.58471 5.67007 5.69720 5.79063 5.83788 5.85097 5.89149 5.95757 6.10036 6.10949 6.14662 6.38095 6.68265 6.85297 6.90351 6.93537 7.11473 7.17628 7.37391 7.62971 8.27516 8.49305 8.96103 9.03841 9.53693 11.06860 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.004116 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.455642 B = 6800.281909 C = 7284.424248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 H 0.056 0.944 4 C 0.511 3.489 5 O -0.519 6.519 6 N -0.600 5.600 7 C 0.081 3.919 8 C 0.218 3.782 9 C -0.526 4.526 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.266 1.266 16 H -0.285 1.285 17 N -0.517 5.517 18 C 0.054 3.946 19 C 0.061 3.939 20 N -0.542 5.542 21 C 0.023 3.977 22 C 0.082 3.918 23 H 0.051 0.949 24 C -0.145 4.145 25 C 0.062 3.938 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.036 0.964 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 8.820 -20.345 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 H 0.074 0.926 4 C 0.297 3.703 5 O -0.394 6.394 6 N -0.333 5.333 7 C -0.063 4.063 8 C 0.097 3.903 9 C -0.565 4.565 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.191 1.191 16 H -0.211 1.211 17 N -0.243 5.243 18 C -0.074 4.074 19 C -0.067 4.067 20 N -0.268 5.268 21 C -0.126 4.126 22 C -0.027 4.027 23 H 0.069 0.931 24 C -0.203 4.203 25 C -0.066 4.066 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.011 8.072 -20.166 21.929 hybrid contribution 0.810 -0.100 0.527 0.972 sum 3.822 7.971 -19.639 21.537 Atomic orbital electron populations 1.21802 0.92239 1.03672 1.02154 1.21617 0.97281 0.95635 0.89837 0.92648 1.20102 0.78946 0.87436 0.83863 1.90673 1.49447 1.14811 1.84451 1.47862 1.61978 1.11417 1.12040 1.21714 0.98713 0.82453 1.03411 1.19641 0.94890 0.93006 0.82770 1.21328 0.94620 1.33637 1.06900 0.90758 1.24862 0.97142 0.94791 0.96256 1.69895 1.32056 1.35511 1.16189 0.86855 0.85637 0.79295 0.77914 1.19923 1.19114 1.21083 1.61869 1.09797 1.52114 1.00478 1.22248 0.87086 0.99070 0.98991 1.22125 0.99501 0.96540 0.88538 1.62215 1.09395 1.52689 1.02459 1.22394 1.00509 0.96460 0.93205 1.21671 0.87405 0.98795 0.94789 0.93124 1.21867 1.00907 1.01174 0.96379 1.22246 1.00159 0.95723 0.88510 0.90802 0.91221 0.92004 0.93880 0.92108 0.90405 0.95284 0.94787 0.92597 0.94611 0.88899 0.93612 0.90394 0.91138 0.91575 0.95671 0.91873 0.92314 0.92005 0.89902 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.43 37.16 0.31 -1.63 16 2 C 0.07 1.06 1.63 -68.87 -0.11 0.95 16 3 H 0.06 0.77 7.08 -51.93 -0.37 0.40 16 4 C 0.51 10.57 5.83 -10.99 -0.06 10.50 16 5 O -0.52 -12.99 14.88 5.55 0.08 -12.91 16 6 N -0.60 -12.47 2.86 -182.96 -0.52 -12.99 16 7 C 0.08 1.26 9.73 59.85 0.58 1.84 16 8 C 0.22 5.36 4.19 -5.19 -0.02 5.34 16 9 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 10 H 0.07 2.37 8.06 -52.48 -0.42 1.94 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 13 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 14 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 17 N -0.52 -7.84 4.31 -227.88 -0.98 -8.82 16 18 C 0.05 0.81 5.24 -3.77 -0.02 0.79 16 19 C 0.06 0.79 5.62 -3.77 -0.02 0.77 16 20 N -0.54 -6.25 4.78 -234.73 -1.12 -7.37 16 21 C 0.02 0.21 9.13 60.07 0.55 0.76 16 22 C 0.08 0.91 2.56 -67.65 -0.17 0.74 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 C -0.15 -1.21 8.86 37.16 0.33 -0.88 16 25 C 0.06 0.74 4.57 -3.76 -0.02 0.72 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.96 6.73 -51.93 -0.35 0.61 16 28 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.80 5.30 -51.93 -0.28 0.53 16 31 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 32 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.03 0.89 6.91 -51.93 -0.36 0.54 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.66 6.05 -51.93 -0.31 1.34 16 37 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 39 H 0.07 0.56 6.25 -51.93 -0.32 0.23 16 40 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 41 H 0.02 0.23 8.14 -51.92 -0.42 -0.19 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.44 6.36 -51.93 -0.33 0.11 16 44 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.08 0.89 6.25 -51.93 -0.32 0.57 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -34.06 348.91 -8.30 -42.36 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.02 Total: -1.72 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 0.90 Total: 6.30 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -1.85 Total: -56.34 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.06 -8.30 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761072835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.305 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds