Wall clock time and date at job start Wed Apr 15 2020 11:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47111 * 2 1 4 4 C 1.50695 * 109.46840 * 120.00478 * 2 1 3 5 5 O 1.21286 * 119.99937 * 93.70724 * 4 2 1 6 6 N 1.34779 * 120.00272 * 273.69586 * 4 2 1 7 7 C 1.46503 * 119.99687 * 4.35710 * 6 4 2 8 8 C 1.46499 * 120.00496 * 184.34953 * 6 4 2 9 9 C 1.50699 * 109.47275 * 270.00784 * 8 6 4 10 10 H 1.08005 * 119.99912 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00232 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00384 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99685 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47120 * 270.00117 * 13 11 9 15 15 H 1.48505 * 109.46830 * 30.00386 * 13 11 9 16 16 H 1.48501 * 109.46959 * 150.00013 * 13 11 9 17 17 N 1.46900 * 109.46843 * 240.00149 * 2 1 3 18 18 C 1.46952 * 110.99894 * 182.64510 * 17 2 1 19 19 C 1.53055 * 109.36477 * 176.81689 * 18 17 2 20 20 N 1.46949 * 109.36671 * 58.39655 * 19 18 17 21 21 C 1.46902 * 111.00275 * 176.81175 * 20 19 18 22 22 C 1.46952 * 110.88290 * 300.68284 * 20 19 18 23 23 H 1.09000 * 109.49091 * 299.34836 * 22 20 19 24 24 C 1.53005 * 109.48965 * 179.28771 * 22 20 19 25 25 C 1.46959 * 110.99837 * 58.84375 * 17 2 1 26 26 H 1.09000 * 109.47643 * 173.90053 * 1 2 3 27 27 H 1.09001 * 109.46705 * 293.89972 * 1 2 3 28 28 H 1.08996 * 109.47090 * 53.89510 * 1 2 3 29 29 H 1.09001 * 109.46771 * 272.01671 * 7 6 4 30 30 H 1.09002 * 109.47213 * 32.01349 * 7 6 4 31 31 H 1.08996 * 109.47303 * 152.01005 * 7 6 4 32 32 H 1.08992 * 109.47100 * 150.00152 * 8 6 4 33 33 H 1.09000 * 109.46626 * 30.00287 * 8 6 4 34 34 H 0.96993 * 120.00151 * 180.02562 * 12 11 9 35 35 H 1.08999 * 109.49158 * 296.77669 * 18 17 2 36 36 H 1.08997 * 109.49119 * 56.84712 * 18 17 2 37 37 H 1.09007 * 109.48244 * 298.42952 * 19 18 17 38 38 H 1.09003 * 109.49162 * 178.36745 * 19 18 17 39 39 H 1.08994 * 109.47530 * 183.80128 * 21 20 19 40 40 H 1.08995 * 109.47330 * 303.80612 * 21 20 19 41 41 H 1.09010 * 109.46901 * 63.80020 * 21 20 19 42 42 H 1.09001 * 109.46912 * 300.10974 * 24 22 20 43 43 H 1.08991 * 109.47126 * 60.10873 * 24 22 20 44 44 H 1.09008 * 109.47089 * 180.11067 * 24 22 20 45 45 H 1.08991 * 109.49307 * 303.15581 * 25 17 2 46 46 H 1.09003 * 109.48921 * 63.19813 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.2984 -1.8928 1.1817 6 7 2.1860 -0.0321 2.3848 7 6 1.7752 1.3716 2.4698 8 6 2.7636 -0.6984 3.5547 9 6 1.6631 -1.3317 4.3665 10 1 0.6361 -1.2461 4.0434 11 6 1.9674 -2.0204 5.5215 12 7 1.0071 -2.5735 6.2296 13 14 3.7438 -2.1691 6.0798 14 1 4.3482 -3.3897 5.4881 15 1 4.5044 -0.9740 5.6339 16 1 3.7911 -2.2614 7.5612 17 7 2.0196 -0.6925 -1.1995 18 6 3.4872 -0.7672 -1.2022 19 6 3.9526 -1.5628 -2.4241 20 7 3.4589 -0.9125 -3.6459 21 6 3.9486 -1.6049 -4.8455 22 6 1.9913 -0.8378 -3.6432 23 1 1.5760 -1.8447 -3.6012 24 6 1.5132 -0.1408 -4.9186 25 6 1.5259 -0.0422 -2.4214 26 1 -0.3634 -1.0218 -0.1092 27 1 -0.3633 0.4164 0.9396 28 1 -0.3633 0.6055 -0.8303 29 1 2.6014 2.0113 2.1594 30 1 0.9197 1.5400 1.8157 31 1 1.4989 1.6077 3.4974 32 1 3.2909 0.0337 4.1662 33 1 3.4619 -1.4682 3.2264 34 1 1.2211 -3.0577 7.0424 35 1 3.9026 0.2397 -1.2443 36 1 3.8278 -1.2637 -0.2937 37 1 3.5596 -2.5780 -2.3682 38 1 5.0420 -1.5948 -2.4440 39 1 3.6244 -1.0644 -5.7348 40 1 5.0375 -1.6462 -4.8221 41 1 3.5470 -2.6181 -4.8696 42 1 1.9297 0.8656 -4.9605 43 1 1.8448 -0.7077 -5.7885 44 1 0.4247 -0.0838 -4.9153 45 1 0.4366 -0.0101 -2.4016 46 1 1.9186 0.9731 -2.4771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761072835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:50 Heat of formation + Delta-G solvation = -34.572887 kcal Electronic energy + Delta-G solvation = -23896.440435 eV Core-core repulsion = 20627.681216 eV Total energy + Delta-G solvation = -3268.759219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40199 -39.96300 -37.00254 -36.49743 -34.71597 -33.49539 -32.56500 -30.36838 -28.65354 -27.97943 -27.38221 -25.71043 -24.54910 -23.33111 -22.57324 -20.67297 -19.83443 -19.13839 -18.13756 -17.54049 -16.83752 -16.61338 -16.38848 -15.95323 -15.76875 -15.66480 -15.16266 -15.05820 -14.64182 -14.26733 -14.15999 -13.97280 -13.69359 -13.35891 -13.26223 -13.15353 -13.02429 -12.85936 -12.78383 -12.70079 -12.52234 -12.46846 -12.35882 -12.03933 -12.03012 -11.77178 -11.70736 -11.47166 -10.83842 -10.48517 -9.43218 -9.38402 -9.24630 -8.34405 -6.39302 1.31282 1.35783 1.43997 1.76861 2.18109 2.30226 2.85472 2.92162 2.99844 3.57930 3.79718 3.97722 4.02678 4.06186 4.16877 4.28749 4.32525 4.35442 4.43275 4.55579 4.61861 4.63306 4.65275 4.69571 4.72919 4.80171 4.82732 4.86534 4.88448 4.91900 4.94796 4.97296 5.03506 5.14678 5.24913 5.37180 5.44986 5.60770 5.84657 5.94160 6.14702 6.15353 6.24636 6.61829 6.70406 7.21419 7.44397 8.82758 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.004116 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.455642 B = 6800.281909 C = 7284.424248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.085 0.915 4 C 0.502 3.498 5 O -0.576 6.576 6 N -0.609 5.609 7 C 0.074 3.926 8 C 0.226 3.774 9 C -0.534 4.534 10 H 0.027 0.973 11 C 0.010 3.990 12 N -0.946 5.946 13 Si 0.948 3.052 14 H -0.278 1.278 15 H -0.237 1.237 16 H -0.274 1.274 17 N -0.539 5.539 18 C 0.059 3.941 19 C 0.067 3.933 20 N -0.543 5.543 21 C 0.022 3.978 22 C 0.079 3.921 23 H 0.030 0.970 24 C -0.137 4.137 25 C 0.063 3.937 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.015 0.985 34 H 0.268 0.732 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.019 0.981 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 11.401 -22.308 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 H 0.102 0.898 4 C 0.290 3.710 5 O -0.455 6.455 6 N -0.341 5.341 7 C -0.068 4.068 8 C 0.104 3.896 9 C -0.573 4.573 10 H 0.046 0.954 11 C -0.188 4.188 12 N -0.586 5.586 13 Si 0.771 3.229 14 H -0.204 1.204 15 H -0.160 1.160 16 H -0.199 1.199 17 N -0.265 5.265 18 C -0.069 4.069 19 C -0.062 4.062 20 N -0.268 5.268 21 C -0.126 4.126 22 C -0.029 4.029 23 H 0.048 0.952 24 C -0.195 4.195 25 C -0.064 4.064 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.109 10.716 -22.158 24.954 hybrid contribution 0.364 -0.926 1.094 1.478 sum 4.473 9.790 -21.065 23.656 Atomic orbital electron populations 1.21810 0.90851 1.02940 1.03797 1.21556 0.98078 0.96016 0.87512 0.89752 1.21120 0.77638 0.87055 0.85187 1.90636 1.51797 1.17526 1.85510 1.47988 1.61696 1.13409 1.10992 1.22024 1.01097 0.79759 1.03912 1.19313 0.93267 0.93169 0.83894 1.21554 0.93810 1.34249 1.07668 0.95446 1.25867 1.02438 0.94186 0.96309 1.70049 1.34865 1.36706 1.16992 0.85709 0.79324 0.80078 0.77784 1.20358 1.16014 1.19883 1.61831 1.09866 1.53377 1.01468 1.22103 0.87342 0.99265 0.98194 1.22020 1.00133 0.95059 0.88945 1.62272 1.09725 1.52489 1.02358 1.22474 1.01027 0.96268 0.92803 1.21754 0.87126 0.98065 0.95996 0.95151 1.21814 1.01724 1.01038 0.94874 1.22359 1.00940 0.96005 0.87099 0.93351 0.91388 0.87881 0.90360 0.89548 0.91134 0.93082 0.96686 0.92285 0.93642 0.92570 0.95968 0.89177 0.89279 0.90785 0.96189 0.91372 0.91454 0.90716 0.88524 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.43 71.98 0.61 -2.93 16 2 C 0.08 2.37 1.63 44.17 0.07 2.45 16 3 H 0.08 2.04 7.08 -2.39 -0.02 2.02 16 4 C 0.50 21.04 5.83 87.66 0.51 21.55 16 5 O -0.58 -30.26 14.88 -3.05 -0.05 -30.30 16 6 N -0.61 -25.19 2.86 -851.14 -2.43 -27.62 16 7 C 0.07 2.14 9.73 127.77 1.24 3.38 16 8 C 0.23 11.22 4.19 85.63 0.36 11.57 16 9 C -0.53 -32.07 9.94 25.60 0.25 -31.82 16 10 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 11 C 0.01 0.59 5.47 84.65 0.46 1.05 16 12 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 13 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 14 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 17 N -0.54 -15.90 4.31 -874.88 -3.77 -19.67 16 18 C 0.06 1.77 5.24 86.31 0.45 2.22 16 19 C 0.07 1.73 5.62 86.31 0.49 2.21 16 20 N -0.54 -11.56 4.78 -896.54 -4.29 -15.85 16 21 C 0.02 0.36 9.13 127.69 1.17 1.53 16 22 C 0.08 1.61 2.56 44.92 0.12 1.72 16 23 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 24 C -0.14 -1.83 8.86 71.98 0.64 -1.20 16 25 C 0.06 1.35 4.57 86.31 0.39 1.74 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.78 6.73 -2.39 -0.02 1.76 16 28 H 0.10 1.82 6.66 -2.39 -0.02 1.80 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.03 5.30 -2.39 -0.01 2.02 16 31 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 32 H 0.05 2.31 7.13 -2.39 -0.02 2.29 16 33 H 0.02 0.80 6.91 -2.39 -0.02 0.79 16 34 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 2.09 6.05 -2.39 -0.01 2.07 16 37 H 0.02 0.66 8.14 -2.38 -0.02 0.65 16 38 H 0.09 2.05 8.13 -2.39 -0.02 2.03 16 39 H 0.09 1.14 6.25 -2.39 -0.01 1.13 16 40 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 41 H 0.02 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.80 6.36 -2.39 -0.02 0.78 16 44 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.10 1.77 6.25 -2.39 -0.01 1.75 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -79.05 348.91 -0.71 -79.76 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.88 Total: 13.65 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.76 Total: 13.47 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -10.19 Total: -123.61 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.30 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -79.05 -0.71 -79.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761072835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.192 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds