Wall clock time and date at job start Wed Apr 15 2020 11:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47163 * 2 1 4 4 C 1.50701 * 109.46689 * 240.00180 * 2 1 3 5 5 O 1.21280 * 120.00080 * 270.53281 * 4 2 1 6 6 N 1.34781 * 119.99882 * 90.53144 * 4 2 1 7 7 C 1.46506 * 119.99991 * 354.77212 * 6 4 2 8 8 C 1.46500 * 120.00080 * 174.77098 * 6 4 2 9 9 C 1.50699 * 109.47119 * 89.99775 * 8 6 4 10 10 H 1.08000 * 120.00120 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00000 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99863 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47501 * 60.00090 * 13 11 9 15 15 H 1.48501 * 109.47250 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47264 * 300.00161 * 13 11 9 17 17 N 1.46892 * 109.47373 * 120.00296 * 2 1 3 18 18 C 1.46955 * 111.00119 * 177.96057 * 17 2 1 19 19 C 1.53052 * 109.36627 * 183.18980 * 18 17 2 20 20 N 1.46955 * 109.36176 * 301.59989 * 19 18 17 21 21 C 1.46900 * 111.00092 * 183.18848 * 20 19 18 22 22 C 1.46956 * 110.88522 * 59.32119 * 20 19 18 23 23 H 1.08994 * 109.50565 * 60.65173 * 22 20 19 24 24 C 1.52997 * 109.49231 * 180.71562 * 22 20 19 25 25 C 1.46955 * 110.99863 * 301.76175 * 17 2 1 26 26 H 1.08997 * 109.46489 * 305.76984 * 1 2 3 27 27 H 1.08996 * 109.47353 * 65.76984 * 1 2 3 28 28 H 1.09002 * 109.46773 * 185.77450 * 1 2 3 29 29 H 1.08997 * 109.46698 * 94.49446 * 7 6 4 30 30 H 1.09000 * 109.46690 * 214.49001 * 7 6 4 31 31 H 1.08997 * 109.46778 * 334.49081 * 7 6 4 32 32 H 1.09000 * 109.47169 * 210.00250 * 8 6 4 33 33 H 1.09010 * 109.46993 * 330.00076 * 8 6 4 34 34 H 0.97001 * 119.99489 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.48647 * 303.15665 * 18 17 2 36 36 H 1.08999 * 109.49007 * 63.19658 * 18 17 2 37 37 H 1.08997 * 109.49127 * 61.56257 * 19 18 17 38 38 H 1.08999 * 109.49135 * 181.63284 * 19 18 17 39 39 H 1.08995 * 109.47002 * 296.20303 * 21 20 19 40 40 H 1.09004 * 109.47155 * 56.19869 * 21 20 19 41 41 H 1.08996 * 109.47589 * 176.19701 * 21 20 19 42 42 H 1.08998 * 109.46892 * 179.89381 * 24 22 20 43 43 H 1.08997 * 109.47353 * 59.88525 * 24 22 20 44 44 H 1.09008 * 109.46440 * 299.88726 * 24 22 20 45 45 H 1.08999 * 109.49360 * 56.84551 * 25 17 2 46 46 H 1.08997 * 109.49006 * 296.77503 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2252 -1.9074 -1.2034 6 7 2.2671 -0.0154 -2.3612 7 6 1.9266 1.4079 -2.4303 8 6 2.8628 -0.6832 -3.5211 9 6 1.7700 -1.2456 -4.3931 10 1 0.7351 -1.1180 -4.1117 11 6 2.0912 -1.9221 -5.5508 12 7 3.3514 -2.0771 -5.8937 13 14 0.7365 -2.6187 -6.6319 14 1 -0.1446 -1.5161 -7.0936 15 1 1.3404 -3.2957 -7.8077 16 1 -0.0633 -3.5986 -5.8539 17 7 2.0198 -0.6925 1.1993 18 6 3.4880 -0.7545 1.2091 19 6 3.9543 -1.5506 2.4303 20 7 3.4489 -0.9091 3.6520 21 6 3.9386 -1.6016 4.8514 22 6 1.9807 -0.8471 3.6424 23 1 1.5741 -1.8572 3.5948 24 6 1.4904 -0.1588 4.9178 25 6 1.5145 -0.0510 2.4211 26 1 -0.3632 0.6007 0.8338 27 1 -0.3634 0.4217 -0.9371 28 1 -0.3633 -1.0225 0.1034 29 1 2.8045 2.0039 -2.1813 30 1 1.5949 1.6534 -3.4391 31 1 1.1271 1.6249 -1.7220 32 1 3.4498 0.0359 -4.0925 33 1 3.5097 -1.4924 -3.1819 34 1 3.5773 -2.5534 -6.7080 35 1 3.8373 -1.2448 0.3004 36 1 3.8944 0.2558 1.2563 37 1 3.5703 -2.5689 2.3689 38 1 5.0437 -1.5733 2.4554 39 1 3.5458 -2.6181 4.8698 40 1 5.0281 -1.6334 4.8333 41 1 3.6056 -1.0672 5.7411 42 1 0.4015 -0.1114 4.9094 43 1 1.8979 0.8510 4.9654 44 1 1.8226 -0.7261 5.7873 45 1 0.4250 -0.0283 2.3961 46 1 1.8984 0.9673 2.4826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761072838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:53 Heat of formation + Delta-G solvation = -12.914799 kcal Electronic energy + Delta-G solvation = -23850.912762 eV Core-core repulsion = 20583.092708 eV Total energy + Delta-G solvation = -3267.820054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04506 -38.61580 -35.73077 -34.69451 -32.65781 -32.53046 -31.26260 -28.05129 -27.49097 -27.01363 -25.82373 -24.45880 -23.19624 -22.26546 -21.26406 -19.68083 -18.23392 -16.70469 -16.47222 -16.16832 -15.71318 -15.17241 -14.98875 -14.76383 -14.45238 -14.19871 -13.97498 -13.69667 -13.18960 -12.98615 -12.70271 -12.28102 -12.22349 -12.14624 -12.03365 -11.97053 -11.72867 -11.68301 -11.52707 -11.30065 -11.11730 -11.10100 -10.89012 -10.67668 -10.55605 -10.48542 -10.12704 -9.60778 -8.77576 -8.43624 -8.40709 -8.11798 -7.59642 -6.01610 -4.05981 3.33666 3.38052 3.39047 3.43165 3.69627 3.80776 4.19603 4.47356 4.71747 4.87388 4.93497 5.08238 5.20607 5.27594 5.30538 5.33575 5.34247 5.36818 5.42963 5.49537 5.55283 5.60730 5.63338 5.69215 5.71356 5.81137 5.86464 5.89483 5.94528 5.98735 6.12970 6.14428 6.20374 6.37246 6.86867 6.93185 7.03267 7.17895 7.21949 7.45128 7.58089 7.94997 8.26406 8.45916 8.93713 9.16131 9.58965 11.06460 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.003891 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.072464 B = 7194.128510 C = 7475.070362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.066 3.934 3 H 0.055 0.945 4 C 0.509 3.491 5 O -0.520 6.520 6 N -0.605 5.605 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.517 5.517 18 C 0.056 3.944 19 C 0.061 3.939 20 N -0.542 5.542 21 C 0.023 3.977 22 C 0.082 3.918 23 H 0.050 0.950 24 C -0.145 4.145 25 C 0.062 3.938 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 7.524 19.490 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 H 0.073 0.927 4 C 0.294 3.706 5 O -0.395 6.395 6 N -0.339 5.339 7 C -0.062 4.062 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.243 5.243 18 C -0.072 4.072 19 C -0.067 4.067 20 N -0.267 5.267 21 C -0.126 4.126 22 C -0.027 4.027 23 H 0.068 0.932 24 C -0.203 4.203 25 C -0.067 4.067 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.008 6.795 19.317 20.576 hybrid contribution -0.676 -0.309 -0.767 1.068 sum -2.685 6.486 18.550 19.834 Atomic orbital electron populations 1.21780 0.92460 1.03522 1.01980 1.21669 0.97137 0.95725 0.90079 0.92727 1.20066 0.78991 0.87706 0.83831 1.90674 1.50866 1.14124 1.83829 1.48190 1.61685 1.09490 1.14490 1.21670 0.99123 0.82603 1.02853 1.19247 0.93760 0.92915 0.81185 1.21394 0.93229 1.35501 1.06171 0.92533 1.24934 0.95611 0.95905 0.97674 1.69924 1.16488 1.42200 1.24924 0.86563 0.81898 0.79305 0.79681 1.20280 1.21200 1.20169 1.61876 1.09454 1.52440 1.00492 1.22215 0.87069 0.99094 0.98865 1.22127 0.99489 0.96582 0.88505 1.62217 1.09027 1.53018 1.02483 1.22392 1.00553 0.96418 0.93201 1.21669 0.87426 0.98780 0.94783 0.93162 1.21867 1.00818 1.01234 0.96403 1.22247 1.00041 0.95812 0.88561 0.92085 0.91453 0.90884 0.93902 0.90831 0.92359 0.95072 0.94083 0.92705 0.89071 0.94512 0.93628 0.90327 0.95690 0.91549 0.91160 0.92046 0.91865 0.92323 0.89960 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.45 37.16 0.31 -1.61 16 2 C 0.07 1.05 1.62 -68.86 -0.11 0.93 16 3 H 0.05 0.78 6.77 -51.93 -0.35 0.43 16 4 C 0.51 10.80 5.67 -10.98 -0.06 10.73 16 5 O -0.52 -13.39 15.25 5.56 0.08 -13.31 16 6 N -0.61 -13.02 2.86 -182.95 -0.52 -13.55 16 7 C 0.08 1.32 9.87 59.85 0.59 1.91 16 8 C 0.25 6.57 5.14 -5.19 -0.03 6.54 16 9 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 13 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.52 -8.01 4.32 -227.88 -0.98 -8.99 16 18 C 0.06 0.86 5.27 -3.77 -0.02 0.84 16 19 C 0.06 0.82 5.62 -3.77 -0.02 0.79 16 20 N -0.54 -6.39 4.78 -234.73 -1.12 -7.52 16 21 C 0.02 0.21 9.13 60.06 0.55 0.76 16 22 C 0.08 0.93 2.56 -67.65 -0.17 0.75 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 C -0.15 -1.23 8.86 37.16 0.33 -0.90 16 25 C 0.06 0.75 4.56 -3.76 -0.02 0.73 16 26 H 0.06 0.65 6.64 -51.93 -0.34 0.31 16 27 H 0.07 0.92 7.22 -51.93 -0.37 0.55 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 31 H 0.06 0.78 5.39 -51.93 -0.28 0.50 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.04 1.22 7.50 -51.92 -0.39 0.83 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 35 H 0.09 1.69 6.25 -51.93 -0.32 1.36 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 39 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 41 H 0.07 0.57 6.25 -51.93 -0.32 0.24 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.45 6.36 -51.92 -0.33 0.12 16 45 H 0.08 0.90 6.23 -51.93 -0.32 0.58 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -33.21 353.40 -8.65 -41.86 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.08 Total: -2.54 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 0.93 Total: 7.76 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -1.89 Total: -56.21 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.21 -8.65 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761072838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.945 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds