Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47163 * 2 1 4 4 C 1.50701 * 109.46689 * 240.00180 * 2 1 3 5 5 O 1.21280 * 120.00080 * 270.53281 * 4 2 1 6 6 N 1.34781 * 119.99882 * 90.53144 * 4 2 1 7 7 C 1.46506 * 119.99991 * 354.77212 * 6 4 2 8 8 C 1.46500 * 120.00080 * 174.77098 * 6 4 2 9 9 C 1.50699 * 109.47119 * 89.99775 * 8 6 4 10 10 H 1.08000 * 120.00120 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00000 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99863 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47501 * 60.00090 * 13 11 9 15 15 H 1.48501 * 109.47250 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47264 * 300.00161 * 13 11 9 17 17 N 1.46892 * 109.47373 * 120.00296 * 2 1 3 18 18 C 1.46955 * 111.00119 * 177.96057 * 17 2 1 19 19 C 1.53052 * 109.36627 * 183.18980 * 18 17 2 20 20 N 1.46955 * 109.36176 * 301.59989 * 19 18 17 21 21 C 1.46900 * 111.00092 * 183.18848 * 20 19 18 22 22 C 1.46956 * 110.88522 * 59.32119 * 20 19 18 23 23 H 1.08994 * 109.50565 * 60.65173 * 22 20 19 24 24 C 1.52997 * 109.49231 * 180.71562 * 22 20 19 25 25 C 1.46955 * 110.99863 * 301.76175 * 17 2 1 26 26 H 1.08997 * 109.46489 * 305.76984 * 1 2 3 27 27 H 1.08996 * 109.47353 * 65.76984 * 1 2 3 28 28 H 1.09002 * 109.46773 * 185.77450 * 1 2 3 29 29 H 1.08997 * 109.46698 * 94.49446 * 7 6 4 30 30 H 1.09000 * 109.46690 * 214.49001 * 7 6 4 31 31 H 1.08997 * 109.46778 * 334.49081 * 7 6 4 32 32 H 1.09000 * 109.47169 * 210.00250 * 8 6 4 33 33 H 1.09010 * 109.46993 * 330.00076 * 8 6 4 34 34 H 0.97001 * 119.99489 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.48647 * 303.15665 * 18 17 2 36 36 H 1.08999 * 109.49007 * 63.19658 * 18 17 2 37 37 H 1.08997 * 109.49127 * 61.56257 * 19 18 17 38 38 H 1.08999 * 109.49135 * 181.63284 * 19 18 17 39 39 H 1.08995 * 109.47002 * 296.20303 * 21 20 19 40 40 H 1.09004 * 109.47155 * 56.19869 * 21 20 19 41 41 H 1.08996 * 109.47589 * 176.19701 * 21 20 19 42 42 H 1.08998 * 109.46892 * 179.89381 * 24 22 20 43 43 H 1.08997 * 109.47353 * 59.88525 * 24 22 20 44 44 H 1.09008 * 109.46440 * 299.88726 * 24 22 20 45 45 H 1.08999 * 109.49360 * 56.84551 * 25 17 2 46 46 H 1.08997 * 109.49006 * 296.77503 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2252 -1.9074 -1.2034 6 7 2.2671 -0.0154 -2.3612 7 6 1.9266 1.4079 -2.4303 8 6 2.8628 -0.6832 -3.5211 9 6 1.7700 -1.2456 -4.3931 10 1 0.7351 -1.1180 -4.1117 11 6 2.0912 -1.9221 -5.5508 12 7 3.3514 -2.0771 -5.8937 13 14 0.7365 -2.6187 -6.6319 14 1 -0.1446 -1.5161 -7.0936 15 1 1.3404 -3.2957 -7.8077 16 1 -0.0633 -3.5986 -5.8539 17 7 2.0198 -0.6925 1.1993 18 6 3.4880 -0.7545 1.2091 19 6 3.9543 -1.5506 2.4303 20 7 3.4489 -0.9091 3.6520 21 6 3.9386 -1.6016 4.8514 22 6 1.9807 -0.8471 3.6424 23 1 1.5741 -1.8572 3.5948 24 6 1.4904 -0.1588 4.9178 25 6 1.5145 -0.0510 2.4211 26 1 -0.3632 0.6007 0.8338 27 1 -0.3634 0.4217 -0.9371 28 1 -0.3633 -1.0225 0.1034 29 1 2.8045 2.0039 -2.1813 30 1 1.5949 1.6534 -3.4391 31 1 1.1271 1.6249 -1.7220 32 1 3.4498 0.0359 -4.0925 33 1 3.5097 -1.4924 -3.1819 34 1 3.5773 -2.5534 -6.7080 35 1 3.8373 -1.2448 0.3004 36 1 3.8944 0.2558 1.2563 37 1 3.5703 -2.5689 2.3689 38 1 5.0437 -1.5733 2.4554 39 1 3.5458 -2.6181 4.8698 40 1 5.0281 -1.6334 4.8333 41 1 3.6056 -1.0672 5.7411 42 1 0.4015 -0.1114 4.9094 43 1 1.8979 0.8510 4.9654 44 1 1.8226 -0.7261 5.7873 45 1 0.4250 -0.0283 2.3961 46 1 1.8984 0.9673 2.4826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761072838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = -37.896166 kcal Electronic energy + Delta-G solvation = -23851.996035 eV Core-core repulsion = 20583.092708 eV Total energy + Delta-G solvation = -3268.903327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36864 -39.94305 -36.97565 -36.46179 -34.73891 -33.50455 -32.47292 -29.83419 -28.63711 -27.97294 -27.32945 -25.83341 -24.74359 -23.35220 -22.66152 -20.67594 -19.81400 -18.68444 -18.11871 -17.51214 -16.90090 -16.61001 -16.34107 -16.00645 -15.76290 -15.65544 -15.14188 -15.03900 -14.50110 -14.20732 -13.99774 -13.93775 -13.49646 -13.32191 -13.18079 -13.11558 -13.02341 -12.85434 -12.77970 -12.74856 -12.58225 -12.51179 -12.37015 -12.19339 -12.03196 -11.77658 -11.69330 -11.46963 -10.64958 -10.43983 -9.43937 -9.40486 -9.25263 -8.22770 -6.37553 1.35421 1.40276 1.47383 1.80461 2.21112 2.40988 2.86365 2.91726 3.06505 3.61080 3.79389 3.97379 4.02741 4.06540 4.16254 4.29116 4.32701 4.36895 4.42107 4.55611 4.62784 4.66064 4.66890 4.70569 4.74594 4.82657 4.86842 4.87939 4.92020 4.96461 5.00485 5.02929 5.14920 5.19779 5.25274 5.37724 5.55277 5.79372 5.87658 5.93692 6.05765 6.14701 6.15543 6.69729 6.79408 7.28300 7.50871 8.84120 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.003891 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.072464 B = 7194.128510 C = 7475.070362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.078 3.922 3 H 0.081 0.919 4 C 0.501 3.499 5 O -0.579 6.579 6 N -0.613 5.613 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.542 4.542 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.278 1.278 16 H -0.279 1.279 17 N -0.538 5.538 18 C 0.061 3.939 19 C 0.068 3.932 20 N -0.543 5.543 21 C 0.022 3.978 22 C 0.079 3.921 23 H 0.032 0.968 24 C -0.136 4.136 25 C 0.063 3.937 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.023 0.977 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.023 0.977 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 9.559 21.198 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 H 0.099 0.901 4 C 0.289 3.711 5 O -0.458 6.458 6 N -0.345 5.345 7 C -0.066 4.066 8 C 0.142 3.858 9 C -0.580 4.580 10 H 0.071 0.929 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.183 1.183 15 H -0.203 1.203 16 H -0.205 1.205 17 N -0.264 5.264 18 C -0.067 4.067 19 C -0.061 4.061 20 N -0.269 5.269 21 C -0.126 4.126 22 C -0.030 4.030 23 H 0.050 0.950 24 C -0.194 4.194 25 C -0.064 4.064 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.041 0.959 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.107 0.893 39 H 0.039 0.961 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.879 8.889 21.052 23.178 hybrid contribution -0.042 -0.946 -1.257 1.574 sum -3.920 7.943 19.795 21.686 Atomic orbital electron populations 1.21802 0.90417 1.03099 1.03927 1.21608 0.98435 0.95824 0.87488 0.90129 1.21119 0.77598 0.87301 0.85059 1.90635 1.53256 1.17006 1.84896 1.48217 1.61286 1.11658 1.13322 1.21964 1.01422 0.79397 1.03799 1.18702 0.92918 0.91672 0.82535 1.21666 0.93372 1.36120 1.06874 0.92937 1.25870 0.98141 0.96036 0.99152 1.70048 1.18552 1.42771 1.25531 0.85472 0.78858 0.78821 0.77691 1.18271 1.20258 1.20489 1.61843 1.09248 1.53709 1.01600 1.22051 0.87597 0.99160 0.97916 1.22002 1.00036 0.95121 0.88934 1.62270 1.09507 1.52819 1.02289 1.22475 1.01028 0.96281 0.92780 1.21766 0.87030 0.98131 0.96034 0.95028 1.21813 1.01715 1.01065 0.94828 1.22377 1.00972 0.96050 0.87033 0.87932 0.91140 0.93034 0.91486 0.91330 0.88801 0.95853 0.98840 0.92402 0.93308 0.93738 0.95865 0.89323 0.96109 0.90878 0.89185 0.90587 0.91426 0.91438 0.88243 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.45 71.99 0.61 -2.78 16 2 C 0.08 2.38 1.62 44.17 0.07 2.45 16 3 H 0.08 2.05 6.77 -2.39 -0.02 2.04 16 4 C 0.50 21.83 5.67 87.66 0.50 22.33 16 5 O -0.58 -31.69 15.25 -3.03 -0.05 -31.74 16 6 N -0.61 -26.88 2.86 -851.11 -2.43 -29.31 16 7 C 0.08 2.35 9.87 127.77 1.26 3.61 16 8 C 0.26 14.63 5.14 85.63 0.44 15.07 16 9 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 10 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 13 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 N -0.54 -16.31 4.32 -874.87 -3.78 -20.08 16 18 C 0.06 1.93 5.27 86.31 0.45 2.39 16 19 C 0.07 1.83 5.62 86.31 0.49 2.32 16 20 N -0.54 -12.01 4.78 -896.56 -4.29 -16.30 16 21 C 0.02 0.37 9.13 127.69 1.17 1.54 16 22 C 0.08 1.63 2.56 44.92 0.12 1.74 16 23 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 24 C -0.14 -1.84 8.86 71.98 0.64 -1.21 16 25 C 0.06 1.36 4.56 86.31 0.39 1.76 16 26 H 0.10 1.73 6.64 -2.39 -0.02 1.72 16 27 H 0.07 1.73 7.22 -2.39 -0.02 1.71 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 31 H 0.09 2.20 5.39 -2.39 -0.01 2.19 16 32 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 33 H -0.01 -0.42 7.50 -2.38 -0.02 -0.44 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.05 1.95 6.25 -2.39 -0.01 1.93 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 2.16 8.13 -2.39 -0.02 2.14 16 39 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 41 H 0.09 1.19 6.25 -2.39 -0.01 1.18 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.80 6.36 -2.38 -0.02 0.79 16 45 H 0.10 1.80 6.23 -2.39 -0.01 1.79 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -76.73 353.40 -0.46 -77.20 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.94 Total: 11.17 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 6.83 Total: 18.28 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -10.21 Total: -122.71 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.05 Total: -31.74 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -76.73 -0.46 -77.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761072838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.303 kcal (2) G-P(sol) polarization free energy of solvation -76.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds