Wall clock time and date at job start Wed Apr 15 2020 11:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.21282 * 119.99544 * 119.99884 * 4 2 1 6 6 N 1.34774 * 120.00011 * 300.00244 * 4 2 1 7 7 C 1.46502 * 120.00006 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99881 * 179.97438 * 6 4 2 9 9 C 1.50700 * 109.47003 * 90.00049 * 8 6 4 10 10 H 1.08004 * 120.00201 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99836 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00342 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99838 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47080 * 59.99992 * 13 11 9 15 15 H 1.48503 * 109.47036 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47287 * 299.99714 * 13 11 9 17 17 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 18 18 C 1.46956 * 111.00023 * 306.04822 * 17 2 1 19 19 C 1.53049 * 109.36639 * 183.18598 * 18 17 2 20 20 N 1.46960 * 109.36417 * 301.59794 * 19 18 17 21 21 C 1.46899 * 111.00175 * 183.18729 * 20 19 18 22 22 C 1.46956 * 110.87891 * 59.31934 * 20 19 18 23 23 H 1.09003 * 109.49085 * 60.66991 * 22 20 19 24 24 C 1.53006 * 109.48897 * 180.71247 * 22 20 19 25 25 C 1.46960 * 110.99878 * 69.84510 * 17 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09005 * 109.46966 * 89.99945 * 7 6 4 30 30 H 1.09001 * 109.47307 * 210.00012 * 7 6 4 31 31 H 1.09000 * 109.47042 * 329.99997 * 7 6 4 32 32 H 1.08998 * 109.47195 * 209.99758 * 8 6 4 33 33 H 1.09004 * 109.46838 * 330.00163 * 8 6 4 34 34 H 0.96991 * 120.00182 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.49116 * 303.15397 * 18 17 2 36 36 H 1.09003 * 109.49085 * 63.19541 * 18 17 2 37 37 H 1.08999 * 109.49228 * 61.55908 * 19 18 17 38 38 H 1.08998 * 109.49205 * 181.63453 * 19 18 17 39 39 H 1.09005 * 109.46968 * 63.95320 * 21 20 19 40 40 H 1.09003 * 109.47304 * 183.95209 * 21 20 19 41 41 H 1.09005 * 109.47303 * 303.95748 * 21 20 19 42 42 H 1.09001 * 109.47221 * 60.00080 * 24 22 20 43 43 H 1.09000 * 109.47055 * 179.97438 * 24 22 20 44 44 H 1.09001 * 109.46822 * 299.99713 * 24 22 20 45 45 H 1.08995 * 109.49128 * 296.78139 * 25 17 2 46 46 H 1.08996 * 109.48962 * 56.84593 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8649 0.9416 2.5890 8 6 2.1946 -0.9408 3.6508 9 6 3.5223 -0.3578 4.0612 10 1 3.9592 0.4467 3.4881 11 6 4.1797 -0.8520 5.1677 12 7 3.6485 -1.8326 5.8648 13 14 5.8251 -0.1288 5.6769 14 1 5.6599 1.3168 5.9737 15 1 6.3198 -0.8292 6.8894 16 1 6.8035 -0.2988 4.5727 17 7 2.0197 -0.6925 -1.1993 18 6 1.4341 -2.0360 -1.3077 19 6 2.0284 -2.7521 -2.5228 20 7 1.7583 -1.9638 -3.7333 21 6 2.2480 -2.6563 -4.9327 22 6 2.3439 -0.6203 -3.6249 23 1 3.4243 -0.7029 -3.5062 24 6 2.0292 0.1775 -4.8920 25 6 1.7496 0.0958 -2.4098 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 -0.1833 0.6440 2.6221 30 1 1.1227 1.4668 3.5086 31 1 1.0288 1.6003 1.7362 32 1 1.4766 -0.8152 4.4612 33 1 2.3154 -2.0021 3.4335 34 1 4.1108 -2.1800 6.6435 35 1 1.6583 -2.6043 -0.4051 36 1 0.3538 -1.9533 -1.4264 37 1 3.1052 -2.8590 -2.3913 38 1 1.5742 -3.7379 -2.6221 39 1 1.6985 -3.5885 -5.0638 40 1 2.0988 -2.0207 -5.8056 41 1 3.3101 -2.8735 -4.8187 42 1 0.9487 0.2607 -5.0100 43 1 2.4632 1.1741 -4.8111 44 1 2.4509 -0.3337 -5.7573 45 1 0.6729 0.2028 -2.5415 46 1 2.2038 1.0817 -2.3106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761072839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:55 Heat of formation + Delta-G solvation = -5.130947 kcal Electronic energy + Delta-G solvation = -23900.945326 eV Core-core repulsion = 20633.462805 eV Total energy + Delta-G solvation = -3267.482521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14082 -38.61051 -35.81426 -34.79897 -32.68175 -32.45731 -30.94875 -28.17373 -27.43408 -26.60106 -26.03527 -24.46810 -23.34228 -22.63526 -21.17881 -19.41401 -18.30760 -16.68393 -16.34553 -15.97496 -15.60664 -15.26054 -14.91430 -14.67153 -14.61082 -14.43269 -13.87014 -13.64296 -13.22558 -13.09283 -12.80656 -12.33701 -12.25191 -12.14746 -12.11568 -12.02958 -11.81593 -11.44278 -11.36352 -11.26373 -11.04007 -10.91502 -10.84064 -10.71848 -10.53612 -10.43698 -10.12306 -9.59610 -8.75706 -8.40624 -8.40287 -8.02669 -7.57396 -6.01445 -4.06002 3.34005 3.38283 3.40700 3.50196 3.69582 3.84519 4.23976 4.48257 4.73475 4.91912 4.95310 5.10789 5.20040 5.22773 5.27973 5.33166 5.34226 5.42468 5.44313 5.51450 5.57808 5.59827 5.60463 5.70918 5.75934 5.79056 5.84054 5.92493 5.95431 6.02320 6.10009 6.19067 6.28017 6.33149 6.90187 6.97614 7.05389 7.23638 7.28083 7.47664 7.58980 7.95423 8.26779 8.47212 8.94105 9.17594 9.59161 11.06565 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.024551 B = 0.004009 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.223146 B = 6982.412851 C = 7301.922217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.065 3.935 3 H 0.100 0.900 4 C 0.512 3.488 5 O -0.524 6.524 6 N -0.603 5.603 7 C 0.083 3.917 8 C 0.248 3.752 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.515 5.515 18 C 0.051 3.949 19 C 0.060 3.940 20 N -0.542 5.542 21 C 0.020 3.980 22 C 0.082 3.918 23 H 0.050 0.950 24 C -0.146 4.146 25 C 0.062 3.938 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.102 0.898 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.917 4.543 -18.632 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.047 4.047 3 H 0.118 0.882 4 C 0.297 3.703 5 O -0.400 6.400 6 N -0.336 5.336 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.239 5.239 18 C -0.076 4.076 19 C -0.068 4.068 20 N -0.267 5.267 21 C -0.128 4.128 22 C -0.027 4.027 23 H 0.068 0.932 24 C -0.204 4.204 25 C -0.066 4.066 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.498 3.881 -18.493 20.329 hybrid contribution 0.941 0.492 0.406 1.137 sum -6.557 4.373 -18.087 19.730 Atomic orbital electron populations 1.22640 0.95929 1.03280 1.03331 1.21625 0.93868 0.98740 0.90437 0.88233 1.20059 0.81069 0.85219 0.83921 1.90625 1.37052 1.26475 1.85828 1.48119 1.49933 1.28279 1.07272 1.21771 0.93732 0.88247 1.02411 1.19254 0.94123 0.93662 0.80129 1.21409 1.04862 1.19047 1.11111 0.92538 1.24928 0.97900 0.94957 0.96287 1.69920 1.39093 1.26072 1.18426 0.86566 0.84000 0.79011 0.77885 1.20280 1.21198 1.20175 1.61987 1.58612 1.02604 1.00680 1.22365 0.96214 0.89980 0.99087 1.22155 0.99717 0.96268 0.88669 1.62230 1.58796 1.02718 1.02959 1.22429 0.97967 0.99129 0.93267 1.21651 0.97302 0.89020 0.94719 0.93238 1.21887 1.02376 0.99519 0.96587 1.22204 0.99044 0.96495 0.88888 0.91796 0.92067 0.90222 0.93554 0.90891 0.92440 0.95102 0.93909 0.92702 0.87971 0.94360 0.93719 0.90509 0.91571 0.91106 0.95696 0.91890 0.92058 0.92280 0.93895 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 8.07 37.16 0.30 -2.14 16 2 C 0.07 1.02 1.93 -68.87 -0.13 0.89 16 3 H 0.10 1.44 7.29 -51.93 -0.38 1.06 16 4 C 0.51 10.75 6.78 -10.98 -0.07 10.68 16 5 O -0.52 -13.26 13.91 5.56 0.08 -13.19 16 6 N -0.60 -12.81 2.86 -182.95 -0.52 -13.33 16 7 C 0.08 1.29 8.80 59.85 0.53 1.82 16 8 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 9 C -0.53 -15.08 9.39 -34.44 -0.32 -15.41 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 13 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 N -0.52 -8.03 4.40 -227.88 -1.00 -9.04 16 18 C 0.05 0.79 4.59 -3.77 -0.02 0.77 16 19 C 0.06 0.82 5.62 -3.77 -0.02 0.80 16 20 N -0.54 -6.51 4.78 -234.72 -1.12 -7.63 16 21 C 0.02 0.20 9.36 60.06 0.56 0.76 16 22 C 0.08 0.95 2.56 -67.65 -0.17 0.78 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 C -0.15 -1.28 8.88 37.16 0.33 -0.95 16 25 C 0.06 0.77 4.61 -3.77 -0.02 0.75 16 26 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 27 H 0.06 0.66 6.75 -51.93 -0.35 0.31 16 28 H 0.08 0.93 4.53 -51.93 -0.24 0.70 16 29 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 30 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.10 1.90 5.84 -51.93 -0.30 1.59 16 36 H 0.04 0.56 6.41 -51.93 -0.33 0.22 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.59 5.83 -51.93 -0.30 0.29 16 41 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.47 6.19 -51.93 -0.32 0.15 16 45 H 0.04 0.51 6.75 -51.93 -0.35 0.16 16 46 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -33.02 345.01 -8.55 -41.57 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.73 Total: -1.49 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 0.84 Total: 6.92 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -1.91 Total: -56.12 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.02 -8.55 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761072839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.436 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds